TCONS_00009663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009663
Unique NameTCONS_00009663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009663 ID=TCONS_00009663|Name=TCONS_00009663|organism=Clytia hemisphaerica|type=transcript|length=496bp
AGTTTAATGGTGTGCGTGTGTTCAAAGCATCTGACCGTACAAGTTTCGCT
CCTTCTATCAATGAGATTGCGGCTCCAATGGCAGAAACAAACACCTTCAC
TGGTCAGGTCCACAGTGTTGTGATGTCATCATTGGCCACATTCTACAAAT
GTCCTCACTGTGGGGAAACATTAGATAGTAATGGCTCCTCAGCAATGTGC
CCTAATACAAACTGTGGCGTAGGTCTCTCCACGAATGCAATTGTTAGTgt
taaagaaatcaaatttaCTGTCCGCAGTGATAGCAATATCGtaagaaatt
tcaaatgtaGCCATCAACTTGTTGAAGCAATGATCAATCAATCAGTCGAA
AACAAAAtggtatttttccaaaaatttattgacactaaagTTGTAGTAAC
TTTTGAAGAAGCAAGTGGTGATGTTGTATCAATTGAAGAGACCTTCTTCT
AATTTAATTTACCAGACTTTATTTGATTCCTGATTTGATTTATTCC
Run BLAST on NCBI

protein sequence of TCONS_00009663-protein

>TCONS_00009663-protein ID=TCONS_00009663-protein|Name=TCONS_00009663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
FNGVRVFKASDRTSFAPSINEIAAPMAETNTFTGQVHSVVMSSLATFYKC
PHCGETLDSNGSSAMCPNTNCGVGLSTNAIVSVKEIKFTVRSDSNIVRNF
KCSHQLVEAMINQSVENKMVFFQKFIDTKVVVTFEEASGDVVSIEETFF
Run BLAST on NCBI

transcript from alignment at sc0000097:325120..325615

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009663 ID=TCONS_00009663|Name=TCONS_00009663|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at sc0000097:325120..325615 (Clytia hemisphaerica)
GGAATAAATCAAATCAGGAATCAAATAAAGTCTGGTAAATTAAATTAGAA
GAAGGTCTCTTCAATTGATACAACATCACCACTTGCTTCTTCAAAAGTTA
CTACAActttagtgtcaataaatttttggaaaaataccaTTTTGTTTTCG
ACTGATTGATTGATCATTGCTTCAACAAGTTGATGGCtacatttgaaatt
tcttaCGATATTGCTATCACTGCGGACAGtaaatttgatttctttaacAC
TAACAATTGCATTCGTGGAGAGACCTACGCCACAGTTTGTATTAGGGCAC
ATTGCTGAGGAGCCATTACTATCTAATGTTTCCCCACAGTGAGGACATTT
GTAGAATGTGGCCAATGATGACATCACAACACTGTGGACCTGACCAGTGA
AGGTGTTTGTTTCTGCCATTGGAGCCGCAATCTCATTGATAGAAGGAGCG
AAACTTGTACGGTCAGATGCTTTGAACACACGCACACCATTAAACT

Coding sequence (CDS) from alignment at sc0000097:325120..325615

>TCONS_00009663 ID=TCONS_00009663|Name=TCONS_00009663|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0000097:325120..325615 (Clytia hemisphaerica)
TTAGAAGAAGGTCTCTTCAATTGATACAACATCACCACTTGCTTCTTCAA
AAGTTACTACAActttagtgtcaataaatttttggaaaaataccaTTTTG
TTTTCGACTGATTGATTGATCATTGCTTCAACAAGTTGATGGCtacattt
gaaatttcttaCGATATTGCTATCACTGCGGACAGtaaatttgatttctt
taacACTAACAATTGCATTCGTGGAGAGACCTACGCCACAGTTTGTATTA
GGGCACATTGCTGAGGAGCCATTACTATCTAATGTTTCCCCACAGTGAGG
ACATTTGTAGAATGTGGCCAATGATGACATCACAACACTGTGGACCTGAC
CAGTGAAGGTGTTTGTTTCTGCCATTGGAGCCGCAATCTCATTGATAGAA
GGAGCGAAACTTGTACGGTCAGATGCTTTGAACACACGCACACCATTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005399XLOC_005399Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009663-proteinTCONS_00009663-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009663-exon-sc0000097-1491911889:325120..325615TCONS_00009663-exon-sc0000097-1491911889:325120..325615Clytia hemisphaericaexon
TCONS_00009663-exon-sc0000097-1510915933:325120..325615TCONS_00009663-exon-sc0000097-1510915933:325120..325615Clytia hemisphaericaexon
TCONS_00009663-exon-sc0000097-1575043694:325120..325615TCONS_00009663-exon-sc0000097-1575043694:325120..325615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:325120..325615 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247232	0.120545	0.50741	0	7.7542	7.02223	3.84771	4.23651	2.58166	3.78099	1.55619	1.17516	0.918067	0.926556	0	0.724133	0	0.0951149	0.349712	0.239224	0	0.174891	0.141735	0.257716	1.21345	1.1619	0.169502	0	0.137204	0.620213
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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