TCONS_00009680 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009680
Unique NameTCONS_00009680
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009680 ID=TCONS_00009680|Name=TCONS_00009680|organism=Clytia hemisphaerica|type=transcript|length=696bp
CGAAAGAAGGCTTCGGGCACTTGAAGAAGATAACAAACTGCTACGAAAAA
CAATCATCGACATTATTATAGATAACGGCAAGCTGGGAGAAAATGATTTC
AGAAATCAAAGACATGTCATTGATACAAATACTGAAAGAGATGTTGATTC
AgtggattttgaaaatttcaatatacTTTCTGGCGATACTACATTACGTC
ATTATGAAAGATTACAAACAACATCAAGCTCAAAAATAGAGGTGGAAAAC
CATGAAGAATATGGTGAAACTGAAGACCAAGTTATCGAGAAAAAAGCTTC
TTTATTTGTTGCTGTGGTTTTCATACCtggatgtttttgtttgtttttct
tatgTTTAAATTGTCCTTTGGTTCGCTTGTGTTCCtgtattcaaaaaaat
atcattggATATGAGAAGACATTTagtataaataaaaatgatacaGTTCA
AGGACCTGGGAACTACCAAAAGCCACCAATGAAGAGAACCATATCGTTTT
ACAAACTATTATGTTATCTTATGGCAAGAAAAAGGTCTGGTGGGAGAAGC
ACGAACATTGAAGcagtttgaattatttttgaactttaaatacacgcttt
tttaataagaataatcttctataagaatgtcAGGGTGagaattggccaaa
tcgtaagaataccctctagggtgaatttcacagaatttgataagaa
Run BLAST on NCBI

protein sequence of TCONS_00009680-protein

>TCONS_00009680-protein ID=TCONS_00009680-protein|Name=TCONS_00009680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
ERRLRALEEDNKLLRKTIIDIIIDNGKLGENDFRNQRHVIDTNTERDVDS
VDFENFNILSGDTTLRHYERLQTTSSSKIEVENHEEYGETEDQVIEKKAS
LFVAVVFIPGCFCLFFLCLNCPLVRLCSCIQKNIIGYEKTFSINKNDTVQ
GPGNYQKPPMKRTISFYKLLCYLMARKRSGGRSTNIEAV
Run BLAST on NCBI

transcript from alignment at sc0000097:648625..649320

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009680 ID=TCONS_00009680|Name=TCONS_00009680|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at sc0000097:648625..649320 (Clytia hemisphaerica)
ttcttatcaaattctgtgaaattcaccctagagggtattcttacgatttg
gccaattctCACCCTgacattcttatagaagattattcttattaaaaaag
cgtgtatttaaagttcaaaaataattcaaactgCTTCAATGTTCGTGCTT
CTCCCACCAGACCTTTTTCTTGCCATAAGATAACATAATAGTTTGTAAAA
CGATATGGTTCTCTTCATTGGTGGCTTTTGGTAGTTCCCAGGTCCTTGAA
CtgtatcatttttatttatactAAATGTCTTCTCATATccaatgatattt
ttttgaatacaGGAACACAAGCGAACCAAAGGACAATTTAAAcataagaa
aaacaaacaaaaacatccaGGTATGAAAACCACAGCAACAAATAAAGAAG
CTTTTTTCTCGATAACTTGGTCTTCAGTTTCACCATATTCTTCATGGTTT
TCCACCTCTATTTTTGAGCTTGATGTTGTTTGTAATCTTTCATAATGACG
TAATGTAGTATCGCCAGAAAgtatattgaaattttcaaaatccacTGAAT
CAACATCTCTTTCAGTATTTGTATCAATGACATGTCTTTGATTTCTGAAA
TCATTTTCTCCCAGCTTGCCGTTATCTATAATAATGTCGATGATTGTTTT
TCGTAGCAGTTTGTTATCTTCTTCAAGTGCCCGAAGCCTTCTTTCG

Coding sequence (CDS) from alignment at sc0000097:648625..649320

>TCONS_00009680 ID=TCONS_00009680|Name=TCONS_00009680|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at sc0000097:648625..649320 (Clytia hemisphaerica)
tcaaactgCTTCAATGTTCGTGCTTCTCCCACCAGACCTTTTTCTTGCCA
TAAGATAACATAATAGTTTGTAAAACGATATGGTTCTCTTCATTGGTGGC
TTTTGGTAGTTCCCAGGTCCTTGAACtgtatcatttttatttatactAAA
TGTCTTCTCATATccaatgatatttttttgaatacaGGAACACAAGCGAA
CCAAAGGACAATTTAAAcataagaaaaacaaacaaaaacatccaGGTATG
AAAACCACAGCAACAAATAAAGAAGCTTTTTTCTCGATAACTTGGTCTTC
AGTTTCACCATATTCTTCATGGTTTTCCACCTCTATTTTTGAGCTTGATG
TTGTTTGTAATCTTTCATAATGACGTAATGTAGTATCGCCAGAAAgtata
ttgaaattttcaaaatccacTGAATCAACATCTCTTTCAGTATTTGTATC
AATGACATGTCTTTGATTTCTGAAATCATTTTCTCCCAGCTTGCCGTTAT
CTATAATAATGTCGATGATTGTTTTTCGTAGCAGTTTGTTATCTTCTTCA
AGTGCCCGAAGCCTTCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005416XLOC_005416Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009680-proteinTCONS_00009680-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009680-exon-sc0000097-1491911889:648625..649320TCONS_00009680-exon-sc0000097-1491911889:648625..649320Clytia hemisphaericaexon
TCONS_00009680-exon-sc0000097-1510915933:648625..649320TCONS_00009680-exon-sc0000097-1510915933:648625..649320Clytia hemisphaericaexon
TCONS_00009680-exon-sc0000097-1575043694:648625..649320TCONS_00009680-exon-sc0000097-1575043694:648625..649320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:648625..649320 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.728496	0.0723242	0.329936	0.897254	2.55428	1.7079	0.280979	0.087683	0.184816	0.384295	0.846179	0.196979	0.24225	0.402526	0.169883	0.577102	0.279244	0.3391	0.309763	0.335732	0.14612	0.216065	0.422751	0.237706	0.0786267	0.488637	0.208312	0.217154	0.660437	0.254988
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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