TCONS_00009715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009715
Unique NameTCONS_00009715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009715 ID=TCONS_00009715|Name=TCONS_00009715|organism=Clytia hemisphaerica|type=transcript|length=1748bp
CGTGTAATATTGTAATGAAAGATCTTTGCGTTCCTCTTGATCGGTGGCCT
TCTAAGGCTCACAAGACACTTCCAGCACTTGTAAAATTTGTGAACTGGAA
GTGTGTCAGAACTGGAAGTACGCCGTGAGCATTATGGGCCACCGTCCTTT
TTGGTCCAAACATGTAACTAATCATTacaaataaatcaataaaaagtACC
TATGAAAGTTTAGACAATTTACTAGTCCTTTTCAAAGAAGCCGTCATTAA
TAACATCTTCTTCAATTTCGAATTTGATCGCCATCTTACCAAACTGTATC
AATGGTTATTCGCGTCTTTGTAATTTTACTGACACCTGATTTGATAACAT
AGTAAAAGACTTTATCATACATCAAGAAAGATGAATATTTTCTGTATGAA
ATATGGTCGTTGGGCTTACTTCAGGCGtacgtacaaactttcgcgaacag
aaactttcgcaattttcgcgaattttagctcttttcgcgaaagtaaatgt
ctctaaaattcttaaaaggccattcgcaaaagtttatgatGCTCGCGAAA
TATctaaacaaaatagaaaatctataaacttctaacttaaaataaaatgt
aacatTTATGGCGCTCTTTAACCTGCTTAATCCTCATAATAAGGAAGTTT
TACTTTCAATTCAAGAAATGTTTGTcactctaagccattttttcgtGTGA
AACTTTTCTTGATTGAAAGAACATTTTTCGCCCAATTcacgaaaataaat
tttcgtaaatttcgcgatttctcGACCtagcgaaagtttgtacgcctaaa
aaaTGTAGAGAGAATATCTGATACACATACGAATGAAAATGTCTCATTCC
TCGAAAAACATTTTCCGAGTCATTTCCAGAGTATCAAGCTCATTCAATCG
TTCGTCTgcacaaaatggaaaaatgatgGGAAATTGGTAATCTCTGAATC
TAAACCATACACAATTATTGTACCTTTTCAGAATCAAGTCTCACTACATT
TCGTATGAAGTATTCTGTTCTGAATTCTGATTTTGACCAATCCAATTCAA
GAGTTCTTGAACCGTACTAAACTTGGAGTTTTCCGTGGTAGGAGCAGTTT
CGTCTTCCGACTCTGTGACTTCTTCATCAGGGTCAGATTTTTCGGGAATT
TTCGGAGTGTCTTCATCAGTGGCGGTTTTCGTCGTCATCTCGGCGGCAAT
TCGTGCACCGGAACGAAGGTCCGTAAGCTCGATAGTGCTATTGGGATGTC
TCTTAGCACGGTGGAGTTTCATGGTTCCACATTGAGTAAACGACTGCCCG
CAATCCGGACACGTGAATGGTTTTTCACCGGTATGAATCCGCATATGACG
GTTCAGCCCTGATTTATCAACAAATCCATTATGACAAATATCGCATTTGT
ACGGGCGGTCGGCCTCGTGGGTCCGCTTATGGCGCCTTAAATCCTCTTTC
GATTTGTAAGTACCCGGACATTGATCGCAAGTAAACGGACGTGAATCGAG
ATGGATCCGCATGTGACGTTGTAAGGTTGACAAAATAACAAAGCCTTGCT
TACATATATTGCAATAGTGTTTCGCTTCGCTTCCGTGCGCATCAACCATG
TGTTGTCGCATAGTTGGTTTATCTCGGTACGTCTTCCCGCATTCTCCGCA
ATCCGTAGCGGTGCTTGATTCGTGACGTCTTAAATGACGGTTCAGGTAAT
CCTTCTTTACGAATTCTTTTTGACATAAATCGCAAACATATGTGCCAT
Run BLAST on NCBI

transcript from alignment at sc0000098:420384..422282+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009715 ID=TCONS_00009715|Name=TCONS_00009715|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at sc0000098:420384..422282+ (Clytia hemisphaerica)
CGTGTAATATTGTAATGAAAGATCTTTGCGTTCCTCTTGATCGGTGGCCT
TCTAAGGCTCACAAGACACTTCCAGCACTTGTAAAATTTGTGAACTGGAA
GTGtgttagtctgaatcgcagacctctacaaaaccccaggtataAGGaac
acgaatccgttagtggatgccagcagcctagagGTGTGTCAGAACTGGAA
GTACGCCGTGAGCATTATGGGCCACCGTCCTTTTTGGTCCAAACATGTAA
CTAATCATTacaaataaatcaataaaaagtACCTATGAAAGTTTAGACAA
TTTACTAGTCCTTTTCAAAGAAGCCGTCATTAATAACATCTTCTTCAATT
TCGAATTTGATCGCCATCTTACCAAACTGTATCAATGGTTATTCGCGTCT
TTGTAATTTTACTGACACCTGATTTGATAACATAGTAAAAGACTTTATCA
TACATCAAGAAAGATGAATATTTTCTGTATGAAATATGGTCGTTGGGCTT
ACTTCAGGCGtacgtacaaactttcgcgaacagaaactttcgcaattttc
gcgaattttagctcttttcgcgaaagtaaatgtctctaaaattcttaaaa
ggccattcgcaaaagtttatgatGCTCGCGAAATATctaaacaaaataga
aaatctataaacttctaacttaaaataaaatgtaacatTTATGGCGCTCT
TTAACCTGCTTAATCCTCATAATAAGGAAGTTTTACTTTCAATTCAAGAA
ATGTTTGTcactctaagccattttttcgtGTGAAACTTTTCTTGATTGAA
AGAACATTTTTCGCCCAATTcacgaaaataaattttcgtaaatttcgcga
tttctcGACCtagcgaaagtttgtacgcctaaaaaaTGTAGAGAGAATAT
CTGATACACATACGAATGAAAATGTCTCATTCCTCGAAAAACATTTTCCG
AGTCATTTCCAGAGTATCAAGCTCATTCAATCGTTCGTCTgcacaaaatg
gaaaaatgatgGGAAATTGGTAATCTCTGAATCTAAACCATACACAATTA
TTGTACCTTTTCAGAATCAAGTCTCACTACATTTCGTATGAANTCTGAAT
CTAAACAATACACAGTTGTTGTACCTTTTCAGAATCAAGTCACACTACAT
TTCGTATGACGTATTCTGTTCTGAATTCTGATTTTGACCAATCCAATTCA
AGAGTTCTTGAACCGTACTAAACTTGGAGTTTTCCGTGGTAGGAGCAGTT
TCGTCTTCCGACTCTGTGACTTCTTCATCAGGGTCAGATTTTTCGGGAAT
TTTCGGAGTGTCTTCATCAGTGGCGGTTTTCGTCGTCATCTCGGCGGCAA
TTCGTGCACCGGAACGAAGGTCCGTAAGCTCGATAGTGCTATTGGGATGT
CTCTTAGCACGGTGGAGTTTCATGGTTCCACATTGAGTAAACGACTGCCC
GCAATCCGGACACGTGAATGGTTTTTCACCGGTATGAATCCGCATATGAC
GGTTCAGCCCTGATTTATCAACAAATCCATTATGACAAATATCGCATTTG
TACGGGCGGTCGGCCTCGTGGGTCCGCTTATGGCGCCTTAAATCCTCTTT
CGATTTGTAAGTACCCGGACATTGATCGCAAGTAAACGGACGTGAATCGA
GATGGATCCGCATGTGACGTTGTAAGGTTGACAAAATAACAAAGCCTTGC
TTACATATATTGCAATAGTGTTTCGCTTCGCTTCCGTGCGCATCAACCAT
GTGTTGTCGCATAGTTGGTTTATCTCGGTACGTCTTCCCGCATTCTCCGC
AATCCGTAGCGGTGCTTGATTCGTGACGTCTTAAATGACGGTTCAGGTAA
TCCTTCTTTACGAATTCTTTTTGACATAAATCGCAAACATATGTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005432XLOC_005432Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009715-exon-sc0000098-1491911889:420384..420483TCONS_00009715-exon-sc0000098-1491911889:420384..420483Clytia hemisphaericaexon
TCONS_00009715-exon-sc0000098-1510915933:420384..420483TCONS_00009715-exon-sc0000098-1510915933:420384..420483Clytia hemisphaericaexon
TCONS_00009715-exon-sc0000098-1575043694:420384..420483TCONS_00009715-exon-sc0000098-1575043694:420384..420483Clytia hemisphaericaexon
TCONS_00009715-exon-sc0000098-1491911889:420567..421475TCONS_00009715-exon-sc0000098-1491911889:420567..421475Clytia hemisphaericaexon
TCONS_00009715-exon-sc0000098-1510915933:420567..421475TCONS_00009715-exon-sc0000098-1510915933:420567..421475Clytia hemisphaericaexon
TCONS_00009715-exon-sc0000098-1575043694:420567..421475TCONS_00009715-exon-sc0000098-1575043694:420567..421475Clytia hemisphaericaexon
TCONS_00009715-exon-sc0000098-1491911889:421544..422282TCONS_00009715-exon-sc0000098-1491911889:421544..422282Clytia hemisphaericaexon
TCONS_00009715-exon-sc0000098-1510915933:421544..422282TCONS_00009715-exon-sc0000098-1510915933:421544..422282Clytia hemisphaericaexon
TCONS_00009715-exon-sc0000098-1575043694:421544..422282TCONS_00009715-exon-sc0000098-1575043694:421544..422282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:420384..422282 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.323387	0.266988	0.307539	0.300309	1.28564	0.460467	0.621093	0.758749	0.521813	0.947838	0.394573	0.442954	0.390122	0.615323	0.201313	0.26653	0.383077	0.266931	0.60667	0.104704	0.421057	0.391334	0.365844	0.113771	1.05913	1.03503	0.110181	0.352612	0.11867	0.176727
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00009715 vs. Swiss-Prot (Human)
Match: ZN596 (Zinc finger protein 596 OS=Homo sapiens GN=ZNF596 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 9.545e-33
Identity = 66/161 (40.99%), Postives = 88/161 (54.66%), Query Frame = -3 
Query: 1258 YVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLHR 1740
            Y C LC K F K  YL +H R H      +C  CGK +     +RQH   +H  E  H C++C + F   S L+RH RIH   +P+ C  C   +    DLRRH+RTH  ++PY+C +C   F   S L RH R HTGEKP+ C  CG++F +    +LHR
Sbjct:  307 YGCLLCGKAFSKCSYLRQHERTHNGEKPYECHLCGKAFSHCSHLRQHE-RSHNGEKPHGCHLCGKAFTESSVLKRHERIHTGEKPYECHVCGKAFTESSDLRRHERTHTGEKPYECHLCGKAFNHSSVLRRHERTHTGEKPYECNICGKAFNRSYNFRLHR 466

HSP 2 Score: 108.227 bits (269), Expect = 8.227e-25
Identity = 57/160 (35.62%), Postives = 83/160 (51.88%), Query Frame = -3 
Query: 1261 YVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLH 1740
            Y C LC K F K   L RH   H    A  C  CGK +     +R+H    H  +  + C +C + F   S L++H R H   +P+ C  C   +     LR+H+R+H  ++P+ C +C   F + S L RH RIHTGEKP+ C  CG++FT+   ++ H
Sbjct:  251 YGCHLCGKAFSKSSNLRRHEMIHTREKAQICHLCGKAFTHCSDLRKHE-RTHLGDKPYGCLLCGKAFSKCSYLRQHERTHNGEKPYECHLCGKAFSHCSHLRQHERSHNGEKPHGCHLCGKAFTESSVLKRHERIHTGEKPYECHVCGKAFTESSDLRRH 409

HSP 3 Score: 106.686 bits (265), Expect = 2.494e-24
Identity = 56/158 (35.44%), Postives = 80/158 (50.63%), Query Frame = -3 
Query: 1261 CDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLH 1734
            C LC K F     L +H R H       C  CGK +     +R+H +  H  E    C++C + F   S L++H R HL  +P+ C  C   +     LR+H+RTH  ++PY+C +C   F   S L +H R H GEKP  C  CG++FT+   +K H
Sbjct:  225 CHLCGKAFTHCSDLRKHERTHTGEKPYGCHLCGKAFSKSSNLRRHEM-IHTREKAQICHLCGKAFTHCSDLRKHERTHLGDKPYGCLLCGKAFSKCSYLRQHERTHNGEKPYECHLCGKAFSHCSHLRQHERSHNGEKPHGCHLCGKAFTESSVLKRH 381

HSP 4 Score: 97.4413 bits (241), Expect = 2.413e-21
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = -3 
Query: 1261 TYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLH 1743
            +Y   L    F++   L  H   H      +C  CGKT+     +R+H +  H  E  H C++C + F   S L++H R H   +P+ C  C   +    +LRRH+  H  ++   C +C   F   S L +H R H G+KP+ C  CG++F++C  ++ H
Sbjct:  166 SYGSHLFDYAFIQNSALRPHSVTHTREITLECRVCGKTFSKNSNLRRHEM-IHTGEKPHGCHLCGKAFTHCSDLRKHERTHTGEKPYGCHLCGKAFSKSSNLRRHEMIHTREKAQICHLCGKAFTHCSDLRKHERTHLGDKPYGCLLCGKAFSKCSYLRQH 325

HSP 5 Score: 87.0409 bits (214), Expect = 6.417e-18
Identity = 44/135 (32.59%), Postives = 65/135 (48.15%), Query Frame = -3 
Query: 1330 CDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHT 1734
            C LC K F +   L RH R H      +C  CGK + +   +R+H    H  E  + C++C + F   S L+RH R H   +P+ C+ C   +    + R H+R H  ++PY C +C   F     L +H R HT
Sbjct:  365 CHLCGKAFTESSVLKRHERIHTGEKPYECHVCGKAFTESSDLRRHE-RTHTGEKPYECHLCGKAFNHSSVLRRHERTHTGEKPYECNICGKAFNRSYNFRLHRRVHTGEKPYVCPLCGKAFSKFFNLRQHERTHT 498
The following BLAST results are available for this feature:
BLAST of TCONS_00009715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN5969.545e-3340.99Zinc finger protein 596 OS=Homo sapiens GN=ZNF596 ... [more]
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