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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009724 ID=TCONS_00009724|Name=TCONS_00009724|organism=Clytia hemisphaerica|type=transcript|length=1344bp
attttatagAAATCGAAGTGACGAAAGGTCTGCTGTTGGCGCTTCTACCA
ACGCTTTCTGCAGAATGGATCGTTTCTATGAAGATACGTTTATTTAGGGA
ACTGGACACGAGTTTTACATTTTGTAGATTATTCCATATGACGAAGGGTG
GCCAAAATACTGTGTACGGTGACAGGACCCCTTTAATATTAATCCGAGCG
TCTGACAATGTTATCCAAACAAACACAGCAATGAACAACATAAAATCACG
CAGCACATTGCTCACGAACAACCCTGTGCAAATCAACCAAACGTTATCCC
TTGAAATACACCAAAGATACATTCAAAACGGCAATCATCGCTATTTTATC
ATCATAAATGGAGTGGAAGTACACAGCGAGGTGAATTATAGTGGACAACA
GTTTCACGATATTAAGGTTTATGCGACATCATCTGGCGGAAACACTGTTA
CAGCATGTCCTGCAATGCTTAGTGATCTAAAACTTACTAATTTCCTTTGA
AGtccgaagaagaaaattaataatGTATGTATGGAAGTGTCCAAAAAAAG
AAtagtggaaaaaaatatttattctcaATATCTGTTGAGCTAGATTCTTG
GGAATGTGTGTCTGTATGCCCTTGTAACACCCCTGTTTCGATGTACCGAT
GAAGTTTTGAAATCCACCGGGGTGGTTATGAAAAAGGTGAAATTTCAttt
acaatcagtgccataacatattggcacttttggctagtttaccatttttc
gaaaattgaagtttgagcgagaatgtcaatttcgggccttcaacttgatt
tcaaggattatttcgatctgggagggacttattggtttctaggctatatt
tcaagccctactggaccatttttgagcttttggatcctcagatcatAAGG
TCCTAAgacttaagtctagcgttaaaactcagggttaaaactctaccctt
tgaacctactttagagcacttgcaaatcgattgtggttcacaccccggtg
gatttctttttttgtgccaagtatttcgtcTGAAATTTCTAGcaccaaaa
aataatttttattttcttcttcacctaccttatcggccctttttacacgc
TGGCCCtcattggcgttatttttgcgTAATAAGGGTTGGTGTTAaaaaag
ggccggtgtaaaaaaggccaagattttgcaattttaacctaaaagcggcg
ttaattttttatcattatttcttaatttaaagaattttagatATGATTCG
AAgatgaaaattatccattgtttcattccatatttaaaactttagtgaaa
tatttgatatatttaaaaatcagtgattttcaatggaattttca Run BLAST on NCBI transcript from alignment at sc0000098:583342..592617+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009724 ID=TCONS_00009724|Name=TCONS_00009724|organism=Clytia hemisphaerica|type=transcript|length=9276bp|location=Sequence derived from alignment at sc0000098:583342..592617+ (Clytia hemisphaerica)
attttatagAAATCGAAGTGACGAAAGGTCTGCTGTTGGCGCTTCTACCA
ACGCTTTCTGCAGAATGGATCGTTTCTATGAAGATACGTTTATTTAGGGA
ACTGGACACGAGTTTTACATTTTGTAGATTATTCCATATGACGAAGGGTG
GCCAAAATACTGTGTACGGTGACAGGTAAcaacaacgtccatataacgct
aggtgaacgttaaaacaacgtcaaTGGCATCAAATTTGACTTTCACGAAT
TTTAGAGtgttaccttatcggggaaaacttcgtcgggaaaaagtgacgaa
attttggccaagtgacgaatatttttccccgacgaaaatttttcccgacg
aaaattttccctgacgaagttttccccgataaggtattttcaATTTGCTG
GCAAAAGCAAAatgaaataaaccagccgaggctggaaggtcagccaatag
agcttagctagatagctttaataagtaggttaacagatgtaagagatgta
cttgaaacagagtagactaaaaatgttgaataatgtaaaaaatgtgaaac
atttgataacttgatttaaaattatttaaaacaagcctgagagctccttc
aACCCTCCCCCCCACGAGAAgatcaaagtatacttctctttagcattgca
gcactgtttctatgacatcaatagagcttagctagatagctttaataagt
aggttaacagatgtaagagatgtactgaaacagagtagactaaaaatgtt
gaataatgtaaaaaatgtgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNagagtgtgcatgttgtgtaacttgacggtataattcattaa
attctagaaaccatttttcataactttctgcagtccgctttctgcaagtc
tgataagagatgcataaactgttatcgccattcattccattccatcattc
agtcaaaacgtgcaccaaggttagaaaaggttagaaaaacacaatctgcg
tccggaactgcgtgaaaaatagtttgatcaatttcaacaggaactgtata
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtttcaaatcgaagtagcgagccgcatgc
taatggagagtaaaccgaaaaccagtttatccacggtttctcaatttctt
aattcggatcagtccacatgCCCatggattccctttcaacaagatgtagc
tgctttttaaaagaaaaatattttcgaccgaccgagtGACCCCCACTTTt
caaagtagaaatgacgggaaccaaataattttttgtgattcgccttatca
aacacgtccaaaccaagtccaaaaaagcacgattgcatccagtctttatc
aaatttagacagtagctgtacttttgtaaactttgtcaaattccaataac
attataacaccatcaatcctacctagaggcaaacaagaaaaatatgtttt
tattgcaaaaactaataaaaagcagcaataaaaagtatcagaaataaatt
caacataaacaaaaacttgagcaaacggctttaaaccttcaaaagatgta
gaaaaagaatccccttgatgaaaatcatgtgtttgatttgccgagNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGtctttgatttgccgagttaaaaaaataa
atgacagaaatagaagcttgcaacagatttacactggaaatactttggta
caacactgacttatcgcttgagccgccatttTGAAACACCACTTTAtgaa
aacaacgcacgctaaaagtacccaaaaagttaacccgttcggaaggaaga
aagtttagaaatcaaagtgagatcgggaaatcggattttttttttgccgt
cttatgatgatggaagaagtagtagtagaagaaaattttacctatttgaa
tgctcagcttaggttGACCAATAACATTCTAAAGTTCGCGAAAGTTaaat
ttgtgaaattttgcgattttgcaaacctcgcgaaagtttctgtccgcgaa
agtttctgctcttaAAGTATCAGAAAACGATATAAAACTTAAAAGCCGAT
AATACACAGGAGACGAAGTTGGTGGGCTAGCATAAACGTTTATCAGCCCC
TTGGTTCACTGACACATTTTCCTGTACTCATTCTAAGTAGCTAAATTAAT
TTCAATACGGCCGGAAAGTTTAGTCGGTAGAACAATAAACCTTATAAACA
AAGGCTTGTGGATTTGATCTCAAGCAAATAAGAAGTTTGGATTGGATATT
CTGGTTTGGCGCTCCCCCTAAGCATTCGACCACCCAGGTTTAGTACAAAT
AGCAAAGGGGACAAGCTCCTTCACTCCTCggatccaatgtgaaaaagctt
gtgaattaaaattgatgagtaagcaaattatatcactcttatttaaaaac
aaaacctttaaaacagTGACTAAAACTTGCTAAAACTTTCTAAAAAACGA
ATCAATGAAAAACCATAAACTCACAATATCTTGATAGTATcctgtatata
tttttattggAGGACCAAGTACACTTACTCACTTATTTACAACCCTTTTT
TTTTTAGGACGCCCTTGGTATCAATCCGTACTGCTGACAACGTTTTACAA
ATCTCCACTGCATTAAATGGTAAAAAATCCCATAATGCTTTATTGATCAA
CAATGCATTGCAAATCAATCAAACTATCGCATTGGAAATACACCAAAGAT
ACGTCAAAAACGGGAATTAcagattttatattttgtttgatGGAATTGAA
ATTGTGGATGATATGAATTACAATGCTGAACAATTTCATGATATCAAAGT
TTATGCGACTTCTTATGGAGGTGAAAATTCTGTTGCATGCCCTGTTTTTT
TAAGTGATCTACAAGTAACAAATTTTCTCTGACGAGGTTCCAAAAAGGCA
CCCTGATGAGGTTCCCGAGCGGCACCCCTTATAATGACACCACGCAGGAT
TCTTtctttccgaaataccgaattgCTCATCGCTAGCCCGTTATCTTTCG
TCCTGCCACGCATCATGTCAAAATTGTGATCACGCAAGAAGATTTTCACT
ATCACAGAGGAAGAAAAGCCCCGATCACTCCATCACGCAACCCGCGAGGG
CTTCTGTGATGGTTGCTTAGTAATAATCTTAGTTGATCGTTTAGGAAGAG
TTTGGCACAACCGTTGGTGTAAAACTATCTATTTTATACTTTACCATGAA
GTGGAACTTCTATTTTCCCTAGGGTTGGGTTGAAGGAGTGAAAACTATTA
TAATTTTACGCCACATCGTCATCTAAAAgcgattttcttttttagatttt
aaagatttttgcaCATTTCAATCATTTAGCAGTTCTTCTGTGGATTTatt
tacaaacaaacaaagtgattttactttttgttacaaaataaacatactaa
cttatgaaaacaaaacaatatgataactatatacaattttttattataac
atctaaaatttttggaggcttcagatgttcttaactttttgacttttaaa
tctaaaagttttctcaatatgttttcattttcaccattttttccattttg
tgaagtttttttttccGTAACACtaaggtgttttagagtccacaaagcct
taaaatgttcttaatatgttctggTCTAAATCGCAGACCTTTACGAAGCC
AGCACAGATAGCATATAAGTAGCACGAATCCGATAGTGTGGATGCCGGGA
TCATCAAGTGGTTTGGGATATTTGACATGTGGAatccttctattgtcctg
agcaaaacctaaaaatatttttgcctaaatatttCTCAAAGTCGAAACAA
TTAAATTTAAAAACGTAAGAACCGTGTGAGAACCCATTtgtagaaatttc
aaattgtgatatctCGACTTTAGAAAATAGTTACCAAAACACCTGATAAT
CCCTTTAATATGTGTTCTtgtacagtttgttcttatcaaaaatcaTATAA
TCTCATAATGTATCAATAACCTTGGATTTATATCATTCAAGAGACACACC
TTTATTCTCAACAGTATCGAATTACGAGTTAGTAAAGTAAAGGATATTTT
CACATTTTCCAATTGAGATGTTTTAGAAACGAATTATTTCAATATTAAAT
TGGACACCGTTTCAAATATTTGTAACCTGCAGTGAAATCGCCGTTAGTAA
TTCTATGTTATTGTAATCAAGCTGAGAGAATCTTATTTATAAAGAGGAAA
AtctcttcaaatttttcaatttggtTTTTGGTATTTCAACCTTTTTGCTT
TGGTTATTCAAACGTCGGCTCAAAAAACGGGTGATTTATTCGACTTAATG
GACAAGCTTTTTTAACACACGAAAAAAATGAGGAACATTTTAACATTCAT
AAcgattttttcattaaatttcagCCATATTTTCACCTGTACGgtaaata
ttttaagattttttttgagattatttGAATATTTCAGTAGAATTTAGAAA
ACTGATACCTTATTACACGGATAAtacaacggccttgaaattaacacgca
aaaaatcaacacgaattttatttgctttttcaaggacaccacggctggtt
ttaattaagggggtttttattaacacgaaatttttcaattcgtgttaata
aaatgactagtaatattcatgtaataagATATAcgattttttacatattt
ttttctacaagcataacgtttataagcatatacaggCTCAGTGTCTGGTA
CCTACataatggctctattgtttaagagCAATGGAATggtaagcataatg
cgagcgaGGGGTAGACACTTTCTTAACAATTTCttattatctttattttt
ttgccaaaaaattccAATACGcttgaattaaaattttaagGACCAAATTA
ttccaaaaagattttctttcaaaCTTTCTTGTCAGTTGTTACCTAAAAAC
AGGCTCAGTTAGGAAGCTATATTTTGGAATCAAACTCAAACTATGCTTGT
TATAAGcttattttctgaaaagaatTGGTTCattaaaatggaaaagaaaa
atgaacctTCCCAAGTAAATCCAGAACAATGACCAATGACTAAAGCTCAc
tgatatgtttttttttttcatccaagCCGGGAATTCACTAAGCCTTTAAA
catttatgcttataaaaaaacattttttaacaagaaaattttgttttgat
gatgtaAAAAGTCTTGTTTGAAATCTTTTAATATTCTACTCAAtcatttt
cttccaaaatttgcagtattCCAGAAATGAAACCATCGTTACTGTTTTGT
TTTGCTGACTATTCTCAACTTTGAGCCCTGCTTCTCTCCGTatacacttt
tttctttataagaacaatttgattaAAACAATGAGGTTCAAGAATACCAA
AgcttaagaacaatttaagaacaatcttcGGCCTTGAATAGTTGGATTAT
TAGCAAATTaaggaaaagtaaaagaatacatgaaattaagaacagaataa
aaacaatttgaggctcaaaattcccaaaaataagaacaacagAGCCTCAT
TGAAAATttgctggttcttataaaaaaagagtgtcaATTAGATTGCTCAT
TCATTCTTCATTTTGCTTTCATTAGAAACTTTCTGGCCGACCACTGAACA
ATCATGGAGTGACCCCGTATGTGTTGATCCCCGAAGAGAAAGGTACGTTA
TAGTAAAgggaatttgtaaaatcgctcgacttttttagtcaaagcacttg
ttatacatttttggaaagataagggataggggaatcaaaataagataatt
tccaatttttctcgGTTTTTgagacaaatatgacggtctcaggcaaaaat
catagggtcaaaatttaatggaaattTTAGCTTTAGAAaagagagacctg
ttgtatatttttgaaaagctctcaaaaaattaagattagagatatattac
GAGTATGTATGATTTCTCTACCTAACTCAACAAATTTCTCCCTACTGTTA
GTAAAGCAAaataagacacccctgtctcacagcccccgTGTAACTTCTTC
CCGCACAGCAGGGATGAAATTTCTATCGTAATTCCAGTGGGAAACACACG
GGAAGAAAAATTGGTTTGAACAATTAATacacccttgtgtcacagaccct
gTTGGAATCcctacccactggaaaatttggctgaagtttcgtccccggtg
ggaagaataccctggaattttaaCCTCACTGGACAATTGACTATcctcat
ttgaaattcaatgaaaaaatgCATTCAAAAACTATCCCCACTGGACTCGA
GTGATTAagggcaagtctcaaaaacctaacagtttaccctaagtttttgC
GACCAATAACAGCCAGATTCAGAAatccacttagggctctaaagtacctc
tataccttGAAGTTTATGAATCACGCTATTTTTTACATAGGGAACAAAAG
AACTTTTAACCCAATGGGGATTTCGATGGAAATTGTCATCCCCATTGGGA
GAAAAAGAAAGAAGGTGTTCCCATCTTCCTGGGATGGGgctttttttggt
gattcctgacatgttcctgaacctctgtacaaaatttcatctctacacca
tttttgtcccGGTTTTGGCGGTTTATGACCTGATTCTACCTGACagcaaa
tttgttcgatttttcagtcattttgaatttattttatagaaatCGAAGTG
ACGAAAGGTCTGCTGTTGGCGCTTCTACCAACGCTTTCTGCAGAATGGAT
CGTTTCTATGAAGATACGTTTATTTAGGGGGCTGGACACGAGTTTTACAT
TTTGTAGATTATTCCATATGACGAAGGGTGGTCAAAATACTGTGTACGGT
GACAGGTATGATAAATCATTTTCCACGTTCtttataacgttagatgaatg
ttgaaacaacgttgtgtagcAGCTGGGCTCCATCCAAAACAAAGTAAACA
AGCTCTGATTCTGATTTGACCTTTGGTCAGCTTGAACATCTACTCTCGGA
TActctaattaattttttgaaaattttccaaccaggacatttttattcca
ccccctCCCTccctaggctacgtcatatcttcctttgtttcgagcgtaaa
acttcTACTCTAGAGTAATGCGTAAAAGActtaaaagcctggagctgtct
attgtgtagactagttTTGCGGTAGAAGTttgtttattcttttatttcca
TCGACAGGACCCCTTTAATATTAATCCGAGCGTCTGACAATGTTATCCAA
ACAAACACAGCAATGAACAACATAAAATCACGCAGCACATTGCTCACGAA
CAACCCTGTGCAAATCAACCAAACGTTATCCCTTGAAATACACCAAAGAT
ACATTCAAAACGGCAATCATCGCTATTTTATCATCATAAATGGAGTGGAA
GTACACAGCGAGGTGAATTATAGTGGACAACAGTTTCACGATATTAAGGT
TTATGCGACATCATCTGGCGGAAACACTGTTACAGCATGTCCTGCAATGC
TTAGTGATCTAAAACTTACTAATTTCCTTTGAAGtccgaagaagaaaatt
aataatGTATGTATGGAAGTGTCCAAAAAAAGAAtagtggaaaaaaatat
ttattctcaATATCTGTTGAGCTAGATTCTTGGGAATGTGTGTCTGTATG
CCCTTGTAACACCCCTGTTTCGATGTACCGATGAAGTTTTGAAATCCACC
GGGGTGGTTATGAAAAAGGTGAAATTTCAtttacaatcagtgccataaca
tattggcacttttggctagtttaccatttttcgaaaattgaagtttgagc
gagaatgtcaatttcgggccttcaacttgatttcaaggattatttcgatc
tgggagggacttattggtttctaggctatatttcaagccctactggacca
tttttgagcttttggatcctcagatcatAAGGTCCTAAgacttaagtcta
gcgttaaaactcagggttaaaactctaccctttgaacctactttagagca
cttgcaaatcgattgtggttcacaccccggtggatttctttttttgtgcc
aagtatttcgtcTGAAATTTCTAGcaccaaaaaataatttttattttctt
cttcacctaccttatcggccctttttacacgcTGGCCCtcattggcgtta
tttttgcgTAATAAGGGTTGGTGTTAaaaaagggccggtgtaaaaaaggc
caagattttgcaattttaacctaaaagcggcgttaattttttatcattat
ttcttaatttaaagaattttagatATGATTCGAAgatgaaaattatccat
tgtttcattccatatttaaaactttagtgaaatatttgatatatttaaaa
atcagtgattttcaatggaattttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009724-exon-sc0000098-1491911889:583342..583516 | TCONS_00009724-exon-sc0000098-1491911889:583342..583516 | Clytia hemisphaerica | exon |
| TCONS_00009724-exon-sc0000098-1510915933:583342..583516 | TCONS_00009724-exon-sc0000098-1510915933:583342..583516 | Clytia hemisphaerica | exon |
| TCONS_00009724-exon-sc0000098-1575043694:583342..583516 | TCONS_00009724-exon-sc0000098-1575043694:583342..583516 | Clytia hemisphaerica | exon |
| TCONS_00009724-exon-sc0000098-1491911889:591449..592617 | TCONS_00009724-exon-sc0000098-1491911889:591449..592617 | Clytia hemisphaerica | exon |
| TCONS_00009724-exon-sc0000098-1510915933:591449..592617 | TCONS_00009724-exon-sc0000098-1510915933:591449..592617 | Clytia hemisphaerica | exon |
| TCONS_00009724-exon-sc0000098-1575043694:591449..592617 | TCONS_00009724-exon-sc0000098-1575043694:591449..592617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098 | supercontig | sc0000098:583342..592617 + |
Blast
The following BLAST results are available for this feature:
|
