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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009726 ID=TCONS_00009726|Name=TCONS_00009726|organism=Clytia hemisphaerica|type=transcript|length=4005bpRun BLAST on NCBI protein sequence of TCONS_00009726-protein >TCONS_00009726-protein ID=TCONS_00009726-protein|Name=TCONS_00009726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=611bp MVGSIDNDFCGTDMTIGADSALHRILESVDTIVTTAQSHQRAFILEVMGRRun BLAST on NCBI transcript from alignment at sc0000098:604699..634273+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009726 ID=TCONS_00009726|Name=TCONS_00009726|organism=Clytia hemisphaerica|type=transcript|length=29575bp|location=Sequence derived from alignment at sc0000098:604699..634273+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000098:604699..634273+ >TCONS_00009726 ID=TCONS_00009726|Name=TCONS_00009726|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000098:604699..634273+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009726 vs. Swiss-Prot (Human)
Match: PFKAM (ATP-dependent 6-phosphofructokinase, muscle type OS=Homo sapiens GN=PFKM PE=1 SV=2) HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0 Identity = 402/722 (55.68%), Postives = 522/722 (72.30%), Query Frame = 3
Query: 195 FFLH*GYQGLVDGGENIKRFHWDDVHGIIQKGGTVIGSARCKDFRNREGRRKAALNLVQRGISNLVVIGGDGSLTGADIFRHEWKSLLEELVLSGDITQESVENFGYLNIVGMVGSIDNDFCGTDMTIGADSALHRILESVDTIVTTAQSHQRAFILEVMGRDCGYLAMIAGISSGADWIFIPEWPCEEGWEENLCNHLQKSRKSGRLLAVLIIAEGAHDSKGNHISANDVKNLLKTRLELDVRTTVLGHVQRGGTTSAFDRLLASRLGAEAALTVLEADEDSEASVMCLCGQQIVKKPLHECVDMCNQIKAAYKDRNFDKVIELRGKSFVSSLEMYKKMKHVKAPDSKHKMGGYTFVIMNIGAPAGGMNAAVSAFVRSALYDGHKVLGVKDGFEGLLTDEVHYMTWSEVDMWAGLGGSRLGVTRTLPGKHLNEVSQVFKNHNVKGLLIIGGFEAFHSLVQLTDAREQYKEFCIPMVLVPATMSNNVPGTWFSLGADTTLNVIVESCDRIRQSASSSRDRVFIVETMGGKCGYLXXXXXXXXXXXXXYIFEDHFTMVDLKKNIQQLVHRIKNSEFQHSGLILRAENCNENYTTDFITRLYAEEGKGVFTTRQNVLGHVQQGGVPTPFDRLCGTRQAFKSLNFLVEQIEKHLDEEGNVCTTTKESSCILGHIKNHSQFVPISDLKEKTDFVNRLPKEQWWRSIQKLLKIFARYEIAYDREDTA 2360
FF+H GYQGLVDGG++IK W+ V ++Q GGTVIGSARCKDFR REGR +AA NLV+RGI+NL VIGGDGSLTGAD FR EW LL +L +G IT E YLNIVG+VGSIDNDFCGTDMTIG DSALHRI+E VD I TTAQSHQR F+LEVMGR CGYLA++ +S GADW+FIPE P ++ WEE+LC L ++R G L ++I+AEGA D G I++ D+KNL+ RL D R TVLGHVQRGGT SAFDR+L SR+G EA + +LE D+ A V+ L G Q V+ PL ECV + + A ++ FD+ ++LRG+SF+++ E+YK + HV+ P SK G +T +MN+GAPA GMNAAV + VR L G++VL V DGFEGL ++ WS V W G GGS+LG RTLP K ++S N++GL+IIGGFEA+ ++L + R+Q+ E CIP V++PAT+SNNVPG+ FS+GADT LN I +CDRI+QSA+ ++ RVFI+ETMGG CGYLATMA +A GA+AAYIFE+ FT+ DL+ N++ LV ++K + GL+LR E CNENYTTDFI LY+EEGKG+F +R+NVLGH+QQGG PTPFDR T+ K++N++ +I++ G + T +S C+LG K F P+++LK++TDF +R+PKEQWW ++ +LKI A+YEI D D A
Sbjct: 49 FFVHEGYQGLVDGGDHIKEATWESVSMMLQLGGTVIGSARCKDFREREGRLRAAYNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITDEEATKSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRIMEIVDAITTTAQSHQRTFVLEVMGRHCGYLALVTSLSCGADWVFIPECPPDDDWEEHLCRRLSETRTRGSRLNIIIVAEGAIDKNGKPITSEDIKNLVVKRLGYDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKKFDEALKLRGRSFMNNWEVYKLLAHVRPPVSKS--GSHTVAVMNVGAPAAGMNAAVRSTVRIGLIQGNRVLVVHDGFEGLAKGQIEEAGWSYVGGWTGQGGSKLGTKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEEPFTIRDLQANVEHLVQKMKTT--VKRGLVLRNEKCNENYTTDFIFNLYSEEGKGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMSGKIKESY-RNGRIFANTPDSGCVLGMRKRALVFQPVAELKDQTDFEHRIPKEQWWLKLRPILKILAKYEIDLDTSDHA 765 The following BLAST results are available for this feature:
BLAST of TCONS_00009726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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