TCONS_00009729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009729
Unique NameTCONS_00009729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1102

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009729 ID=TCONS_00009729|Name=TCONS_00009729|organism=Clytia hemisphaerica|type=transcript|length=1102bp
CATAATATTCGGTTGAACTTCTACTTCGATAACTTAAACGGTGATTATCA
TATTTCCCATATTGGTGATTACTTCTTTTCCTCTGTCTAGCAATCTCCTT
TTCACTAAGGGTATCAGATGTTTCCCCATGGGAAGTGAAACTCAAACGGT
GATTGTCGTATTTCCCATATTGGTGGCTGCTTCTTTTCCTTTGTCTTTCT
GCGTGCTTTTCCTTAGGGGAATCAGGTTTCACCTCTGTGGAATCACAAGC
TAACTGATGGTTATCGTAATTTCCATACTCATGGCTGcttcttttccttt
ctttttctgATTCTTTTTCACTAGCTGGGTCGTAACTCAAGCTGTGATTG
CTGTATTTCCCATACTGGTGGCTACTCTTTTTCCTCAGTCTTGCTACTTC
TTTATCATTAGTGTGATCTGATGCATCCCCATGGTAATCAATTGTTATGG
AGTTATCATAAAATATATCATCAGATAGTTGACTTTCTCGTTTGAAATTA
AGGGAGTTATAATTAGGGAATTCGTCTAATTCCTCATTGTGATTTTCTTC
GTTTCCCATTGTGAAAAGAGTTTCCACGTTGTTGTTCGCGTCTATCTTAG
ATGGGAAAATCAGCTCGGTAAAATTCTCTTCGCTTCCGTATGTTTCTACC
TCTGAAANTTGTGAAAAGAGTTTCCTCGTTGTTGTTCGCGTCTATCTTAG
ATGGGAAAATCAGCTCGGTAAAATTCTCTTCGCTTCCGTATGTTTCTACC
TCTGAAATTGTCCTATCATATCCAGGAGTAGATTCCCCATTGGGAATTGG
TGAAATAGCCAAGGGATTTGAATCACCATATGAGATTGAAGAGTCAACCA
tataattttcagaatttgtgtGAAAGTTATTTGACTGTTTACAATCAATT
TCATCAACTGTCTGAGTTCCCTCTCCctcaaaaataagattttccgCGGT
GGAGATTTCTGCTTTCACTATGGGGTTTGCTGGTTTCAATATGGGGATTT
CTGCTTTCACTATGGAGTTTGTTGGTTTCATATCGTGGTCGAACGTGAGC
AAACCATAGTGATTTGATTCAAAGTAACCAGAATTTCGTGGCGAATGCTC
TG
Run BLAST on NCBI

transcript from alignment at sc0000098:94110..95319-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009729 ID=TCONS_00009729|Name=TCONS_00009729|organism=Clytia hemisphaerica|type=transcript|length=1210bp|location=Sequence derived from alignment at sc0000098:94110..95319- (Clytia hemisphaerica)
CATAATATTCGGTTGAACTTCTACTTCGATAACTTAAACGGTGATTATCA
TATTTCCCATATTGGTGATTACTTCTTTTCCTCTGTCTAGCAATCTCCTT
TTCACTAAGGGTATCAGATGTTTCCCCATGGGAAGTGAAACTCAAACGGT
GATTGTCGTATTTCCCATATTGGTGGCTGCTTCTTTTCCTTTGTCTTTCT
GCGTGCTTTTCCTTAGGGGAATCAGGTTTTCCTCCTGTGGAATCACAAGC
TAACTGATGGTTATCATAATTTCCGTACTCATGATTGCTTCTTTTCCTTT
GTTTTTCTACGTGCTTTTCCTTAGGAGAATCAGGTTTCACCTCTGTGGAA
TCACAAGCTAACTGATGGTTATCGTAATTTCCATACTCATGGCTGCTTCT
TTTCCTTTCTTTTTCTGATTCTTTTTCACTAGCTGGGTCGTAACTCAAGC
TGTGATTGCTGTATTTCCCATACTGGTGGCTACTCTTTTTCCTCAGTCTT
GCTACTTCTTTATCATTAGTGTGATCTGATGCATCCCCATGGTAATCAAT
TGTTATGGAGTTATCATAAAATATATCATCAGATAGTTGACTTTCTCGTT
TGAAATTAAGGGAGTTATAATTAGGGAATTCGTCTAATTCCTCATTGTGA
TTTTCTTCGTTTCCCATTGTGAAAAGAGTTTCCACGTTGTTGTTCGCGTC
TATCTTAGATGGGAAAATCAGCTCGGTAAAATTCTCTTCGCTTCCGTATG
TTTCTACCTCTGAAANTTGTGAAAAGAGTTTCCTCGTTGTTGTTCGCGTC
TATCTTAGATGGGAAAATCAGCTCGGTAAAATTCTCTTCGCTTCCGTATG
TTTCTACCTCTGAAATTGTCCTATCATATCCAGGAGTAGATTCCCCATTG
GGAATTGGTGAAATAGCCAAGGGATTTGAATCACCATATGAGATTGAAGA
GTCAACCATATAATTTTCAGAATTTGTGTGAAAGTTATTTGACTGTTTAC
AATCAATTTCATCAACTGTCTGAGTTCCCTCTCCCTCAAAAATAAGATTT
TCCGCGGTGGAGATTTCTGCTTTCACTATGGGGTTTGCTGGTTTCAATAT
GGGGATTTCTGCTTTCACTATGGAGTTTGTTGGTTTCATATCGTGGTCGA
ACGTGAGCAAACCATAGTGATTTGATTCAAAGTAACCAGAATTTCGTGGC
GAATGCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005441XLOC_005441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009729-exon-sc0000098-1575043694:95095..95319TCONS_00009729-exon-sc0000098-1575043694:95095..95319Clytia hemisphaericaexon
TCONS_00009729-exon-sc0000098-1575043694:94110..94986TCONS_00009729-exon-sc0000098-1575043694:94110..94986Clytia hemisphaericaexon
TCONS_00009729-exon-sc0000098-1510915933:95095..95319TCONS_00009729-exon-sc0000098-1510915933:95095..95319Clytia hemisphaericaexon
TCONS_00009729-exon-sc0000098-1510915933:94110..94986TCONS_00009729-exon-sc0000098-1510915933:94110..94986Clytia hemisphaericaexon
TCONS_00009729-exon-sc0000098-1491911889:95095..95319TCONS_00009729-exon-sc0000098-1491911889:95095..95319Clytia hemisphaericaexon
TCONS_00009729-exon-sc0000098-1491911889:94110..94986TCONS_00009729-exon-sc0000098-1491911889:94110..94986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:94110..95319 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0408947	0.119636	0	0.089309	0	0	0	0.247511	0	0	0.2621	0	0	0.262897	0	0.147527	0.285077	0.0979864	0.491225	0.644457	0.392013	0.41791	0	0	1.13386	0	0.00199385	0.117983	0.638047	0.159904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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