TCONS_00009730 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009730
Unique Name	TCONS_00009730
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1196

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000098:134273..139533-
coding sequence from alignment at sc0000098:134273..139533-

transcript sequence

>TCONS_00009730 ID=TCONS_00009730|Name=TCONS_00009730|organism=Clytia hemisphaerica|type=transcript|length=1196bp
AGGCGATTGCATATGGGATTTCCGGCAAGACAATATTACAAGCTCATTCG
AATGTGATGATGGATGTGATGCGATCCGGTTTTCCGTAACTTTGAAATGT
GAGAATCATCCTGATGAAGTGATCATCAAAACGAGTGGAACCAAGAAAAA
GGATTGGCAATATGTTTTGTTTGATGTTGAGAAACCGATTGGTACAAAAT
GTCAGATCCAATGGAAAGCAGCAAAAGGTTTGTCGGAGGACGGAAAAGTC
GGTATCGATGACGTCAACATCCATTACGAGCCATGTCCGACACAGGGACG
AATTTTCTCCACTCGCCTTGGGTGTTCCTTCCACAAAGGATTTTGTTTAT
GGGGAACATCAGGTGAATTGACGTGGACACCTGGCAAACATGAGATTCTC
AGCAGAAGCCAAAATTATGTTATCAAACAAGAAAGCTCCAAGATCTTTGT
CAACAACAGTAAAACCATTTTACATCCCAACAAATCAGCCGTCTTAACGA
GTCCCATCGCGTATAATACACATCCTAAATGTCTAACATTCAAATGGTTG
AAGATTGCTGATAACTTCACTTACAATCCTGGTAATTTGACCGTATCCTT
CATCAAAGCGAATCTAACTGAACAAGCATGGGTGGATAATTATGATGAGC
TTCTTGCTAAAGATAAAGGAAAGCGTATGGTGCCATGGAATCTAGCTATG
GTAGATTTGCCAAGAAAGCAGGAGTTTAAGgcTGAAATCAAGTTCCATAC
TAACCCAAAAGGTGCTTTATTTTTCACCGCTATTTGCGAGATGAGAGTTC
TTGACGGCGAATGTGAAGTCCACCAAATCCCTACTTTTCATCAAGCgcca
tttcaaacaaaaaagaagaaaaacaaaagaaaacaaagaagaagTTCACA
TgggaaacaaaaaaatcctgATGTGGATTTCGACCAGGAGGAGATGAATC
ACAGTGTggaaaatttggatgaaaaggGAAATCCCTTACCAGTGAAGCGA
TCAAAGGTTGGCAAATGTTTTGATTGTTATGAATTTGTGATTTTAGTTTT
GTATTTAtttgaatttaagaaatatcCTTTTTAATttatatgttgttttt
tttgggttTATAATACCAACGGATTAGTTGATAATACAGAATAATAAATT
GttggattatttttgtaaaaacataTTGCAGTTTGTTACCTTCACA

Run BLAST on NCBI

protein sequence of TCONS_00009730-protein

>TCONS_00009730-protein ID=TCONS_00009730-protein|Name=TCONS_00009730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
GDCIWDFRQDNITSSFECDDGCDAIRFSVTLKCENHPDEVIIKTSGTKKK
DWQYVLFDVEKPIGTKCQIQWKAAKGLSEDGKVGIDDVNIHYEPCPTQGR
IFSTRLGCSFHKGFCLWGTSGELTWTPGKHEILSRSQNYVIKQESSKIFV
NNSKTILHPNKSAVLTSPIAYNTHPKCLTFKWLKIADNFTYNPGNLTVSF
IKANLTEQAWVDNYDELLAKDKGKRMVPWNLAMVDLPRKQEFKAEIKFHT
NPKGALFFTAICEMRVLDGECEVHQIPTFHQAPFQTKKKKNKRKQRRSSH
GKQKNPDVDFDQEEMNHSVENLDEKGNPLPVKRSKVGKCFDCYEFVILVL
YLFEFKKYPF

Run BLAST on NCBI

transcript from alignment at sc0000098:134273..139533-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009730 ID=TCONS_00009730|Name=TCONS_00009730|organism=Clytia hemisphaerica|type=transcript|length=5261bp|location=Sequence derived from alignment at sc0000098:134273..139533- (Clytia hemisphaerica)
AGGCGATTGCATATGGGATTTCCGGCAAGACAATATTACAAGCTCATTCG
AATGGTACCGTAATTTTCCATTCCCGGAGAACTTTCCAATACGGAAACAT
CATTATGACGCGGACGAGATTGAAAAACCACTTTTGATAGCTACAGTAAA
GAACAAGAAGCTTAAGCGAAATCAACATTCGATTTTAACGACTGACGTTC
CAATCAAGAAATCAAAACAATGCATTGACTTCTATTACTATATGTTCAGT
GATGATGGATGTGATGCGATCCGGTTTTCCGTAACTTTGAAATGTGAGAA
TCATCCTGATGAAGTGATCATCAAAACGAGTGGAACCAAGAAAAAGGATT
GGCAATATGTTTTGTTTGATGTTGAGAAACCGATTGGTACAAAATGTCAG
GTGGGTCTTGATGTTCAAATATATGTCCGAATCTTAGGGACAACGAAGAC
GGGGGTAAATCGTATGAAATCGACAAAAAATGTGATCTCAGGATCTAGGT
CAAATGTAATATCAGGATCTAGGTCTTTTATATAGGGACTAGATTTAGGG
ATTTGGACCAAATATAAGGACTAGATTTAGGGACTTTTGGACCAAAAATG
ACCGGGTTATTTGTAGATGATAATTAGGTTTAGTCTAAAGAAAGGCTCTA
ACCTTGAAAAAGTAATATGCGGCTGAAGTTCGGCAAATACGTTTTAAAAC
CAATGATTTTTTGCACGTCAGTTTTCGGGTTTAAAAAAAATTTCGTAGCG
GCCTTAGCAGAAACCCCCTTAAGAAAAACTCTTTAAATACTTCATTCTTT
GAAATGGACCAGTTTTGGTTGCGTCGCATAAAAGATGTCACCGGGGCCCT
TAAGACCACTAAAATGTGTCTGTGTCATCGAACTCATATTTTCCGACTTA
CAGATCCAATGGAAAGCAGCAAAAGGTTTGTCGGAGGACGGAAAAGTCGG
TATCGATGACGTCAACATCCATTACGAGCCATGTCCGACACAGGGACGAA
TTTTCTCCAGTAAGTCTGCACCTCTCAAATTCTCACTGTCGAATTTTCAT
TGTACCTAATGTTAAGTCACACCTAGGACTAGACTATGTTATAGTCTAAG
ACGAATCACTATCTAAGAAAAAAGCCCAAAGCCGAAGAAAATTCGCAAAC
GGATTTTTTTACCGAAAAGAGTTAACAGTCGGTAGAGTTGCCAGTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCTCTCCCGCCGATTTTTTCCCGTATACCGCCATAACGCCA
TACCGCCATATTTTCCCGCCTTTACTATCATTGTAACGGACGATAACATC
GTCTAACCTAGGATGTATGGAATAGAATCTCTAACCTTTCGCAGGCAAGA
AAAAGTGAAGGCACTTATTTCCCATCGTAAAGGCACCCAGAACGCGCCGC
AATCATGACGATGGATTGTATCTAGTGGTTCCTTTGTTTTTGAGGACTGC
ATTTTTAAATCTAGTGATAGATTTTACTTCCAATCCGACGTTTGTGTTAA
AACCACGCGCGGGTGTTCTAAATGGAAAATAAGTGGTTTTATTTCCCATT
CAGTAGTCTCGAGTCTAGCCCTACGGGCCTGGAAATCAATGGTCAGAGTC
GACTTTGGCTAAGCCTGTTTTTTCTAAGAAAGTTTTTAAGTTGCGAGTTA
CATCCCTTATAACAGAGGGAGGCAAAGAGCCAAAGACGCTCAGTGAATGG
ACAATATCTAGGTGTCTGCCCATATTCCAACAAAAAAGTTTCTAATAGGA
TATAAAGAGGTCTGTATTTCAGACTACATACCTTATCGGGGAAAACTTTG
TCGGGGAAAAGTGACGAAATTTCGGCCAAAGTGACGAATATTTTTCCCCG
ACGAAAATTTTCCCCGGCCTTAATGCGTTTACCAAAACCAGCAAGTGACG
AATATTTTCCCCGACGAAAATTTTCCCCGACGAAAATTTTCCCCGACGAA
GCTTTCCCCGATAAGGTATACCATCATATGAGAAGTTCAAGTGTAAATTT
GTTTGTTAACGCAAAGGTGTAAAAGACGTTAGAACAGTGCAAAATAAATG
AGATTGCAACGATAATGAAACCTTAACCACCCGCAAAAGCTTTCAGCTGA
GTATGATTGAGAAAAGCTACCTTAAACTTATTTTAATGAACTGAAAAATA
TGACGAATAATGCTTTAAAATAGAAATGCTTCTTGATAATTTAATGTATA
CAACTTTCTCTTCTTAGCTCGCCTTGGGTGTTCCTTCCACAAAGGATTTT
GTTTATGGGGAACATCAGGTGAATTGACGTGGACACCTGGCAAACATGAG
ATTCTCAGCAGAAGCCAAAATTATGTTATCAAACAAGGTAAACCAACGAT
TTCTGATTATAGTGTCTTGATACATTTTATCAATAGGGAAGGGTTTCAGT
GCAAAGAAATGCTAGAAAACGAATTCAATCAATAATGTAATACAAGTATT
CGCAAAAATTTATCCACAACGAAATTCTTTGAAATCGTGATTCGCTAAAA
TTAATTCAAAAAAAATCAAGATTTTCCTGACTCGCTAATATACGCTAAAA
TTAGTCTCGCTAAAATTTATACGATTAAAGTATTTGGGAAGGTTGAGACC
TGTCAGATATATTCAGAGCCTAGAAAAGGTACTGTGACAAGCAGCACGTC
CCCGCACCCAATTTTTCCTAAGTGTTCACCCGGGATATTCTTAACTAATC
AAATCTAATTTTATTCTAGAAAGCTCCAAGATCTTTGTCAACAACAGTAA
AACCATTTTACATCCCAACAAATCAGCCGTCTTAACGAGTCCCATCGCGT
ATAATACACATCCTAAATGTCTAACATTCAAATGGTTGAAGATTGNAAAT
CAGCCGTCTTAACAAGTCCCATCGCGTATAATACACATCCTAAATGTCTA
ACATTCAAATGGTTGAAGATTGCTGATAACTTCACTTACAATCCTGGTAA
TTTGACCGTATCCTTCATCAAAGCGAATCTAACTGAACAAGCATGGGTGG
ATAATTATGATGAGCTTCTTGCTAAAGATAAAGGAAAGCGTATGGTGCCA
TGGAATCTAGCTATGGTAGATTTGCCAAGAAAGCAGGAGTTTAAGGTAGG
TTTTTTATCAATTGTGTCGTTGTATTTCGCTGCAGATTAAACATGCCATG
GGATCTATGTCTATATGTTCACTGAATACAATGTCTTTCCAAACCAATCT
ACTACGGCAATTTCTATTTTTTATAATAATTCTTATAAGCACTGTTCCCG
CGTTCCTGTGTCCAAGGAAAGACAAACGCTTGCTAGTCTATATTAAAGGG
GAGCTTTGGATTTTTTCGTTTCTATCCTGAAATGGTAAACTTCAAAATTT
CAAGGTTGCAACTTTCAGTTCACTCTAAAAATTTGTTTAATGAGCTTTTA
AAAAAAGGCTCTCCTCTACTAAAATGAAATTATCTTATATACTTTCTTTC
TCATTTTTATACTTAATATTACCAAAAATCAGGAAAAAATGAAAATGCCA
AATTTGTTGAGTTCCCCTTTATTTAGTACAAAAAAGGTACTCGATGCCTC
TCTGCTTGATGCTCAGCAATAAGGCAACCCTACTGGCACACAACGTCCAT
ATAACGCTAGATTAACGTTGACACAACGTTGTTTAACGTTGACACAACGT
TGTTTGTGTGCCAGCTTGGAAGGATCAAGATTAAGTGGAGAAAGAGTGAT
GCCCCCCGGGTCCACCTGATCCAGTCACCCGGATCCAGTCGCCCAATTTT
CTTTTATATGGTTCTAATGTCCATCAGTGAGATCAAATCGTGATACAAAC
TATTATACCTTGTTATAAAAATAAATTTCAAGAAACTCTCCACAACTTCC
AGCTTAAAGGAAATAATTAGATGGTTTTTGCATATAGATTGCTTCAGTGA
TTTTGAGAAAAAAACTACAAATTATTTCCACAGACAAGGTATTAAGTTTT
CGACTCAAAAAACAATAGGGTTTTGACGTAAGAATCTTGTAACAGCCCAT
TTTTAGAGATTTCAAATTGTCATATCTAGACAAAAAAGTTTATCTTCTTA
ATTTTCCTACATTGTTTCCAATTTCCTGATGAATAAACCTCAAAGAGGGA
AGGGTTTGGTACCGACGGTATCGGTATTGGTCTGATTTCTGTCGGGTTTT
CAGTAGTCGAGTCTGTTAGGTCTCTACTTGCATTACAAAGTGTCTTAAAA
ATTATTCCCTTTTTAAGGACCTTGTGGAGACGATAAGACAGTCTAGGTGC
TGTTTATATGGAGGCGGGCTGGACAGGCTAGGTGAGGTGGGATGGATTTT
CGAACGTTTAGTCACAGTTTTTGACGAATTAAATGGCTAAAAATAGATCA
CGTGACGTTCGAAAGTCTATCCCACCTCACCAGCCCGCCTCTATATAAAC
AGCCCGCCTCCATATAAACCAGCCCGCCTCCATATGAACCAGCCCGCCTC
CATATGAACCAGCCCGCCTCCATATGAACCAGCCCGCCTCCATATGAACA
AGCCCGCCTCCAATTGAACCAACCCGCCTCCATATAAACCAGCCCGCCTC
CATATGAACCATCTCGCCTCCATATGAACAAGCCCGTCTCCATATGAACC
ATCTCGCCTTCATATGAACCAGCCCGCCTTCATATGAACCAGCCCGCCTT
TATATGAACCAGCCCGCCTCCATATGAACCAGGCCGCCTCCGTATGAACA
AGCCCCTAAGTATCTAAAAATGTTTATCGTTCATTTTATTTTCAGGCTGA
AATCAAGTTCCATACTAACCCAAAAGGTGCTTTATTTTTCACCGCTATTT
GCGAGATGAGAGTTCTTGACGGCGAATGTGAAGTCCACCAAATCCCTACT
TTTCATCAAGCGCCATTTCAAACAAAAAAGAAGAAAAACAAAAGAAAACA
AAGAAGAAGTTCACATGGGAAACAAAAAAATCCTGATGTGGATTTCGACC
AGGAGGAGATGAATCACAGTGTGGAAAATTTGGATGAAAAGGGAAATCCC
TTACCAGTGAAGCGATCAAAGGTTGGCAAATGTTTTGATTGTTATGAATT
TGTGATTTTAGTTTTGTATTTATTTGAATTTAAGAAATATCCTTTTTAAT
TTATATGTTGTTTTTTTTGGGTTTATAATACCAACGGATTAGTTGATAAT
ACAGAATAATAAATTGTTGGATTATTTTTGTAAAAACATATTGCAGTTTG
TTACCTTCACA

Coding sequence (CDS) from alignment at sc0000098:134273..139533-

>TCONS_00009730 ID=TCONS_00009730|Name=TCONS_00009730|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0000098:134273..139533- (Clytia hemisphaerica)
GGCGATTGCATATGGGATTTCCGGCAAGACAATATTACAAGCTCATTCGA
ATGTGATGATGGATGTGATGCGATCCGGTTTTCCGTAACTTTGAAATGTG
AGAATCATCCTGATGAAGTGATCATCAAAACGAGTGGAACCAAGAAAAAG
GATTGGCAATATGTTTTGTTTGATGTTGAGAAACCGATTGGTACAAAATG
TCAGATCCAATGGAAAGCAGCAAAAGGTTTGTCGGAGGACGGAAAAGTCG
GTATCGATGACGTCAACATCCATTACGAGCCATGTCCGACACAGGGACGA
ATTTTCTCCACTCGCCTTGGGTGTTCCTTCCACAAAGGATTTTGTTTATG
GGGAACATCAGGTGAATTGACGTGGACACCTGGCAAACATGAGATTCTCA
GCAGAAGCCAAAATTATGTTATCAAACAAGAAAGCTCCAAGATCTTTGTC
AACAACAGTAAAACCATTTTACATCCCAACAAATCAGCCGTCTTAACGAG
TCCCATCGCGTATAATACACATCCTAAATGTCTAACATTCAAATGGTTGA
AGATTGCTGATAACTTCACTTACAATCCTGGTAATTTGACCGTATCCTTC
ATCAAAGCGAATCTAACTGAACAAGCATGGGTGGATAATTATGATGAGCT
TCTTGCTAAAGATAAAGGAAAGCGTATGGTGCCATGGAATCTAGCTATGG
TAGATTTGCCAAGAAAGCAGGAGTTTAAGGCTGAAATCAAGTTCCATACT
AACCCAAAAGGTGCTTTATTTTTCACCGCTATTTGCGAGATGAGAGTTCT
TGACGGCGAATGTGAAGTCCACCAAATCCCTACTTTTCATCAAGCGCCAT
TTCAAACAAAAAAGAAGAAAAACAAAAGAAAACAAAGAAGAAGTTCACAT
GGGAAACAAAAAAATCCTGATGTGGATTTCGACCAGGAGGAGATGAATCA
CAGTGTGGAAAATTTGGATGAAAAGGGAAATCCCTTACCAGTGAAGCGAT
CAAAGGTTGGCAAATGTTTTGATTGTTATGAATTTGTGATTTTAGTTTTG
TATTTATTTGAATTTAAGAAATATCCTTTTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005442	XLOC_005442	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009730-protein	TCONS_00009730-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000098	supercontig	sc0000098:134273..139533 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.3073	44.3058	27.6752	21.5412	35.8222	24.4767	29.2066	28.2514	14.1758	18.0093	11.9812	14.3156	15.3954	14.1759	12.1648	11.9595	17.7553	22.0707	32.5934	41.3439	25.8915	24.3595	30.6219	29.4884	19.5278	17.3593	65.9963	66.488	9.97404	12.8041

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000998	MAM_dom
IPR013320	ConA-like_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009730 vs. Swiss-Prot (Human)

BLAST of TCONS_00009730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00009730 (transcript) - C. hemisphaerica