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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009754 ID=TCONS_00009754|Name=TCONS_00009754|organism=Clytia hemisphaerica|type=transcript|length=3117bpRun BLAST on NCBI protein sequence of TCONS_00009754-protein >TCONS_00009754-protein ID=TCONS_00009754-protein|Name=TCONS_00009754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp MDTEVNSPSGGVEGDKEEGIEIDLEIVSSRKTDDHPELTIVPSSTKKTKERun BLAST on NCBI transcript from alignment at sc0000098:420442..435363- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009754 ID=TCONS_00009754|Name=TCONS_00009754|organism=Clytia hemisphaerica|type=transcript|length=14922bp|location=Sequence derived from alignment at sc0000098:420442..435363- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000098:420442..435363- >TCONS_00009754 ID=TCONS_00009754|Name=TCONS_00009754|organism=Clytia hemisphaerica|type=CDS|length=2019bp|location=Sequence derived from alignment at sc0000098:420442..435363- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009754 vs. Swiss-Prot (Human)
Match: ZN112 (Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=1 SV=2) HSP 1 Score: 209.92 bits (533), Expect = 6.377e-56 Identity = 112/357 (31.37%), Postives = 172/357 (48.18%), Query Frame = 3
Query: 768 FVCFWCDRRFTIYSMFKVHVASHLEAVRVPCTICSKSFTTKSSLKDHMRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREHYNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKK-EDHKTPHQLMXXXXXXXXXXXXXXXXVNEDGVSAAKKRTLRTTGFTQKEDGTYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLHR 1835
+ C CD+ F+ S + H H C C K F+ S L+ H R HTGE+PYKC +CGK F S L H ++H G C+ CGK F +NL++H ++H K + C+EC GF++ L +H++ + P+Q +E G S +++ L++ + Y+C++C K F ++ YL H R H C CGK + + H H + C +C +GF S LQ H R+H++ RP+ C+QC + L+ H R H ++PYKC++C GF +S L H R+HTGEKP+ C CG+ F + +H+
Sbjct: 553 YKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVH----------TGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQ------------------CDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHR-RVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQ 880 HSP 2 Score: 139.813 bits (351), Expect = 1.250e-33 Identity = 86/310 (27.74%), Postives = 131/310 (42.26%), Query Frame = 3
Query: 768 FVCFWCDRRFTIYSMFKVHVASHLEAVRVPCTICSKSFTTKSSLKDHMRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREHYNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKKEDHKTPHQLMXXXXXXXXXXXXXXXXVNEDGVSAAKKRTLRTTGFTQKEDGTYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYK 1697
F C C + F+ ++H H C C K F+ S+L H R HTGE+PY+C++CGK+F L SH +H+G + C++CGK F + L+ H ++H R K + C+ C GF++ L +H R + T G Y C++C K F + L H R H C +CGK + +++ H H E + C +C +GF S LQ H R+H +P+ CD C ++ L H+R H +D+ YK
Sbjct: 637 FKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTR----------VKPYKCEMCGKGFSQSSRLEAH---------------------------------------RRVHTGG------KPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHH-RVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSDKFYK 890 HSP 3 Score: 139.813 bits (351), Expect = 1.473e-33 Identity = 100/353 (28.33%), Postives = 144/353 (40.79%), Query Frame = 3
Query: 789 RRFTIYSMFKVHVASHLEAVRVPCTICSKSFTTKSSLKDHMRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREH---YNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKKEDHKTPHQLMXXXXXXXXXXXXXXXXVNEDGVSAAKKRTLRTTGFTQKEDGTYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLHRA 1838
+ F S + H+E C F+ S +D HT E+PYK C +F + L H KIH G K +EH +N +K H+R +K K C C GF + LN H++ V +K Y C+ C K F + YL H R H C ECGK + ++ H H E + C C +GF S LQ H R+H +PF C++C + +L+ H+R H ++PYKC+ C GF S L H R+HTGEKP+ C +CG+SF+Q ++ H++
Sbjct: 422 KSFICSSNLDIQHRVHMEENSYNSEECGNGFSLASHFQDLQIVHTKEQPYKRYVCSNSFSHNLYLQGHPKIHIG---------EKPRKEHGNGFNWSSKLKDHQRVHTGQKPYK------CNICGKGFNHRSVLNVHQR-------------------------------VHTGEK--------------PYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQ-RVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQS 713 HSP 4 Score: 85.8853 bits (211), Expect = 7.824e-17 Identity = 43/145 (29.66%), Postives = 73/145 (50.34%), Query Frame = 3
Query: 762 RRFVCFWCDRRFTIYSMFKVHVASHLEAVRVPCTICSKSFTTKSSLKDHMRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREHYNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKK 1196
R ++C C + F+ + + H H C +C K F+ S L+ H R HTG +PYKC C K F S +L +H ++H + C+ CGK F + +L+ H ++H K + C+ C GF+++ +L +H++
Sbjct: 719 RPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVH----------TGEKPYKCEVCGKGFSQRSNLQAHQR 853 The following BLAST results are available for this feature:
BLAST of TCONS_00009754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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