TCONS_00009769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009769
Unique NameTCONS_00009769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009769 ID=TCONS_00009769|Name=TCONS_00009769|organism=Clytia hemisphaerica|type=transcript|length=275bp
AAAGGGATTGGAATCTATAGTCCAGGAAATAAAACTTTACCTACTACAAC
AGaaccaaacaaaaaaacacaacGCTAAAAGCTAACGAATGGCCGAAATG
TCCCtccaaaatattcaaatcaTATTACACTCAGAATTATCTCTAGTCTA
AATCGGAGATCTCTACATCCAGGTCTACAAGGGGTTCTACCCTTGTCGAC
TGTCAGGGGGGGGTGTGCCGCTGAAGTTCGAAATatagaccctacgtggg
acCCGTGACTCTGAATAGGACTAAA
Run BLAST on NCBI

transcript from alignment at sc0000098:187710..187984

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009769 ID=TCONS_00009769|Name=TCONS_00009769|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at sc0000098:187710..187984 (Clytia hemisphaerica)
TTTAGTCCTATTCAGAGTCACGGgtcccacgtagggtctatATTTCGAAC
TTCAGCGGCACACCCCCCCCTGACAGTCGACAAGGGTAGAACCCCTTGTA
GACCTGGATGTAGAGATCTCCGATTTAGACTAGAGATAATTCTGAGTGTA
ATAtgatttgaatattttggaGGGACATTTCGGCCATTCGTTAGCTTTTA
GCgttgtgtttttttgtttggttCTGTTGTAGTAGGTAAAGTTTTATTTC
CTGGACTATAGATTCCAATCCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005460XLOC_005460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009769-exon-sc0000098-1491911889:187710..187984TCONS_00009769-exon-sc0000098-1491911889:187710..187984Clytia hemisphaericaexon
TCONS_00009769-exon-sc0000098-1510915933:187710..187984TCONS_00009769-exon-sc0000098-1510915933:187710..187984Clytia hemisphaericaexon
TCONS_00009769-exon-sc0000098-1575043694:187710..187984TCONS_00009769-exon-sc0000098-1575043694:187710..187984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:187710..187984 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58572	2.06177	0	1.17103	4.27686	1.68982	2.71826	1.9086	4.8996	0.551722	1.60655	2.11216	0	0	0	0	0	0	0	0.587972	0.511054	0	0	0	0	0	2.89911	2.32051	0	1.19546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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