TCONS_00009770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009770
Unique NameTCONS_00009770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009770 ID=TCONS_00009770|Name=TCONS_00009770|organism=Clytia hemisphaerica|type=transcript|length=304bp
TATTCTTCCATGTTTCATTTCGGATACGAGCAGCCATCTTTTTCACGTTG
TCACTGAACACTTATCTCTCTCTCTTAATAAACTCAGCATTATCGACAAC
GAACATTTGCAATAACAAAAGGCCTTTCAACGTTTCATGTTCACATTGAG
TATAATAAAGATTATCTGGAAATTCCCATTTATAGTAATTCGTGCACGCG
ATAGTTGCATTAGGGGAAATCCCCTTATGTCTCATCTAGGCCaagcgaaa
tatttttttcaattttcacttcttttcgtttcttttttacttcatctttt
ttat
Run BLAST on NCBI

transcript from alignment at sc0000098:188187..188490

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009770 ID=TCONS_00009770|Name=TCONS_00009770|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0000098:188187..188490 (Clytia hemisphaerica)
ataaaaaagatgaagtaaaaaagaaacgaaaagaagtgaaaattgaaaaa aatatttcgcttGGCCTAGATGAGACATAAGGGGATTTCCCCTAATGCAA CTATCGCGTGCACGAATTACTATAAATGGGAATTTCCAGATAATCTTTAT TATACTCAATGTGAACATGAAACGTTGAAAGGCCTTTTGTTATTGCAAAT GTTCGTTGTCGATAATGCTGAGTTTATTAAGAGAGAGAGATAAGTGTTCA GTGACAACGTGAAAAAGATGGCTGCTCGTATCCGAAATGAAACATGGAAG AATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005461XLOC_005461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009770-exon-sc0000098-1491911889:188187..188490TCONS_00009770-exon-sc0000098-1491911889:188187..188490Clytia hemisphaericaexon
TCONS_00009770-exon-sc0000098-1510915933:188187..188490TCONS_00009770-exon-sc0000098-1510915933:188187..188490Clytia hemisphaericaexon
TCONS_00009770-exon-sc0000098-1575043694:188187..188490TCONS_00009770-exon-sc0000098-1575043694:188187..188490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:188187..188490 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.373121 0 0 0 0 0.397615 0 0 0 0 0 0 8.43713 8.24662 0 0 3.3612 2.00966 9.91589 9.13111 5.05056 5.2789 2.13906 3.11155 1.20181 2.86023 1.02324 0.546017 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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