TCONS_00009772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009772
Unique NameTCONS_00009772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009772 ID=TCONS_00009772|Name=TCONS_00009772|organism=Clytia hemisphaerica|type=transcript|length=1689bp
CATTGAAATTGCAGAACTCTTGAATCTTGACATCAAAGAACCAGATGGCA
CCAACAAATCAATCAACTACATTCTCGCTAATGTTTATAATTATCTTCGT
GATCAGAAAGTTCTTTTTGTATTCGACGATGCATGGGACTTAGGGGTGGT
CAAAAAGTTCCTTCCAACATTCAAGGATACCACTGTTATAATAACATCGC
AGAAAGCAGATTGGCCATCCCAAGACTTCGAAAGAATCCAAATGCTATCT
TTTTCTAAAGTTGAGTCAAAGAAACTACTTGCTTCACAATGCCAATCTAT
CCTTACTGACCAACAGATCCAGGAGATTATAAAACTGGCTGGAGGTCATC
CTTTAACTCTGCAGCAATTCATTACAGCTCTGAACCGCTCCTTATTAAAT
CCTGATGAGCTGATTGCAACTTTCAAAGAGGAAAAAGCACACTTGTTGCA
GAGGAATGTATCCAGTCTGCCTGAAGGGCTTTCTGCTATCGCTGGAGTAA
GGATAAACCTAAGGAGATGCTCAAATGAGATTGGAGATGGCGAATTGGCT
ATTGAGATTCTCAAACGGCTGTGTCTTTTGGAGACTGAGCAAATACCATT
GCCTGTGGTGGAAATTCTCACTGCAGGAGAATCGAAGCTTGAGTTGGATT
CAGCTCTTTGCCAACTTGAAAGCATGTCTCTCATCACCAAACGCAAGTCA
AATCAAGGAGAATACATTGTTACAATTCATTCACTCATTCAAGCTACCAT
TTTAGACATAATTAAAGATAGGAAAGCAGAATATTTAAACGagtgtttga
aacttttctTCCAAGAAAtcgatcgagaaaaaaaatcattttctatccAT
CACACTGATTttggaaggaaatatttcaaccaTATTGTTAAGATCATATC
ATCGAAAGGTGCTGATGGAAACCTTTATAGAATGATCGCTGAGAAAATCA
GTGACATCGAAAACATCATGTTGGCAAAAGCCGAGTATGAAAGAATCTCT
CAAATCACAGACACACTTTTGACGAGCTGCACCTTTGACACAGAAACACA
ATTGACTATCCAAAAACTCAGTGCTTCATCCTTATTCAAACAAGGAAAGT
ACATAATTGCGCGGCAAACATATGAAATAATTCTCTCAGAAGAAACCGAA
ACGATAGGCTCGGAGCATTCTAACACGCTATCAACAAACCACCATATAGC
AATTTGTTACCTGCGGCAAGGTAAATATGATATAGCAAAATCCATCCTTG
AGAAAAACCTTTCGAAGCAAAATGATGTACTCGGGCCATTACACGTGGAA
ACACTGAGAACGATCCATTGTATCGCATTATGTCATGATGAAAAAGGAGA
ATATGACaaagctttgaaaatttataatgatGTTCTGGATAAACGAATAC
AAGTATTGGGTGATCACCATCCGAATACTTTGAAAACGAAAAACAACATT
GGTGTTTGTTATGATAATATGGGCGATTACGagcaagctttgaaaattta
CCAGGAGGTTCTGGATAAACGAATACAAGTATTGGGTGATCACCATCCGG
ATACTTTGACAACGAAACACAACATTGGTTTTTGTTATGATAATATGGGC
GATTACGagcaagctttgaaaatttaCCAGGAGGTTCTTGATAAACAAAT
ACAAGTATTGGGTGATCACCATCCGGATACTTTGACAAC
Run BLAST on NCBI

protein sequence of TCONS_00009772-protein

>TCONS_00009772-protein ID=TCONS_00009772-protein|Name=TCONS_00009772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp
IEIAELLNLDIKEPDGTNKSINYILANVYNYLRDQKVLFVFDDAWDLGVV
KKFLPTFKDTTVIITSQKADWPSQDFERIQMLSFSKVESKKLLASQCQSI
LTDQQIQEIIKLAGGHPLTLQQFITALNRSLLNPDELIATFKEEKAHLLQ
RNVSSLPEGLSAIAGVRINLRRCSNEIGDGELAIEILKRLCLLETEQIPL
PVVEILTAGESKLELDSALCQLESMSLITKRKSNQGEYIVTIHSLIQATI
LDIIKDRKAEYLNECLKLFFQEIDREKKSFSIHHTDFGRKYFNHIVKIIS
SKGADGNLYRMIAEKISDIENIMLAKAEYERISQITDTLLTSCTFDTETQ
LTIQKLSASSLFKQGKYIIARQTYEIILSEETETIGSEHSNTLSTNHHIA
ICYLRQGKYDIAKSILEKNLSKQNDVLGPLHVETLRTIHCIALCHDEKGE
YDKALKIYNDVLDKRIQVLGDHHPNTLKTKNNIGVCYDNMGDYEQALKIY
QEVLDKRIQVLGDHHPDTLTTKHNIGFCYDNMGDYEQALKIYQEVLDKQI
QVLGDHHPDTLT
Run BLAST on NCBI

transcript from alignment at sc0000098:241515..243203

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009772 ID=TCONS_00009772|Name=TCONS_00009772|organism=Clytia hemisphaerica|type=transcript|length=1689bp|location=Sequence derived from alignment at sc0000098:241515..243203 (Clytia hemisphaerica)
GTTGTCAAAGTATCCGGATGGTGATCACCCAATACTTGTATTTGTTTATC
AAGAACCTCCTGGtaaattttcaaagcttgctCGTAATCGCCCATATTAT
CATAACAAAAACCAATGTTGTGTTTCGTTGTCAAAGTATCCGGATGGTGA
TCACCCAATACTTGTATTCGTTTATCCAGAACCTCCTGGtaaattttcaa
agcttgctCGTAATCGCCCATATTATCATAACAAACACCAATGTTGTTTT
TCGTTTTCAAAGTATTCGGATGGTGATCACCCAATACTTGTATTCGTTTA
TCCAGAACatcattataaattttcaaagctttGTCATATTCTCCTTTTTC
ATCATGACATAATGCGATACAATGGATCGTTCTCAGTGTTTCCACGTGTA
ATGGCCCGAGTACATCATTTTGCTTCGAAAGGTTTTTCTCAAGGATGGAT
TTTGCTATATCATATTTACCTTGCCGCAGGTAACAAATTGCTATATGGTG
GTTTGTTGATAGCGTGTTAGAATGCTCCGAGCCTATCGTTTCGGTTTCTT
CTGAGAGAATTATTTCATATGTTTGCCGCGCAATTATGTACTTTCCTTGT
TTGAATAAGGATGAAGCACTGAGTTTTTGGATAGTCAATTGTGTTTCTGT
GTCAAAGGTGCAGCTCGTCAAAAGTGTGTCTGTGATTTGAGAGATTCTTT
CATACTCGGCTTTTGCCAACATGATGTTTTCGATGTCACTGATTTTCTCA
GCGATCATTCTATAAAGGTTTCCATCAGCACCTTTCGATGATATGATCTT
AACAATAtggttgaaatatttccttccaaAATCAGTGTGATggatagaaa
atgattttttttctcgatcgaTTTCTTGGAagaaaagtttcaaacactCG
TTTAAATATTCTGCTTTCCTATCTTTAATTATGTCTAAAATGGTAGCTTG
AATGAGTGAATGAATTGTAACAATGTATTCTCCTTGATTTGACTTGCGTT
TGGTGATGAGAGACATGCTTTCAAGTTGGCAAAGAGCTGAATCCAACTCA
AGCTTCGATTCTCCTGCAGTGAGAATTTCCACCACAGGCAATGGTATTTG
CTCAGTCTCCAAAAGACACAGCCGTTTGAGAATCTCAATAGCCAATTCGC
CATCTCCAATCTCATTTGAGCATCTCCTTAGGTTTATCCTTACTCCAGCG
ATAGCAGAAAGCCCTTCAGGCAGACTGGATACATTCCTCTGCAACAAGTG
TGCTTTTTCCTCTTTGAAAGTTGCAATCAGCTCATCAGGATTTAATAAGG
AGCGGTTCAGAGCTGTAATGAATTGCTGCAGAGTTAAAGGATGACCTCCA
GCCAGTTTTATAATCTCCTGGATCTGTTGGTCAGTAAGGATAGATTGGCA
TTGTGAAGCAAGTAGTTTCTTTGACTCAACTTTAGAAAAAGATAGCATTT
GGATTCTTTCGAAGTCTTGGGATGGCCAATCTGCTTTCTGCGATGTTATT
ATAACAGTGGTATCCTTGAATGTTGGAAGGAACTTTTTGACCACCCCTAA
GTCCCATGCATCGTCGAATACAAAAAGAACTTTCTGATCACGAAGATAAT
TATAAACATTAGCGAGAATGTAGTTGATTGATTTGTTGGTGCCATCTGGT
TCTTTGATGTCAAGATTCAAGAGTTCTGCAATTTCAATG

Coding sequence (CDS) from alignment at sc0000098:241515..243203

>TCONS_00009772 ID=TCONS_00009772|Name=TCONS_00009772|organism=Clytia hemisphaerica|type=CDS|length=1686bp|location=Sequence derived from alignment at sc0000098:241515..243203 (Clytia hemisphaerica)
TGTCAAAGTATCCGGATGGTGATCACCCAATACTTGTATTTGTTTATCAA
GAACCTCCTGGtaaattttcaaagcttgctCGTAATCGCCCATATTATCA
TAACAAAAACCAATGTTGTGTTTCGTTGTCAAAGTATCCGGATGGTGATC
ACCCAATACTTGTATTCGTTTATCCAGAACCTCCTGGtaaattttcaaag
cttgctCGTAATCGCCCATATTATCATAACAAACACCAATGTTGTTTTTC
GTTTTCAAAGTATTCGGATGGTGATCACCCAATACTTGTATTCGTTTATC
CAGAACatcattataaattttcaaagctttGTCATATTCTCCTTTTTCAT
CATGACATAATGCGATACAATGGATCGTTCTCAGTGTTTCCACGTGTAAT
GGCCCGAGTACATCATTTTGCTTCGAAAGGTTTTTCTCAAGGATGGATTT
TGCTATATCATATTTACCTTGCCGCAGGTAACAAATTGCTATATGGTGGT
TTGTTGATAGCGTGTTAGAATGCTCCGAGCCTATCGTTTCGGTTTCTTCT
GAGAGAATTATTTCATATGTTTGCCGCGCAATTATGTACTTTCCTTGTTT
GAATAAGGATGAAGCACTGAGTTTTTGGATAGTCAATTGTGTTTCTGTGT
CAAAGGTGCAGCTCGTCAAAAGTGTGTCTGTGATTTGAGAGATTCTTTCA
TACTCGGCTTTTGCCAACATGATGTTTTCGATGTCACTGATTTTCTCAGC
GATCATTCTATAAAGGTTTCCATCAGCACCTTTCGATGATATGATCTTAA
CAATAtggttgaaatatttccttccaaAATCAGTGTGATggatagaaaat
gattttttttctcgatcgaTTTCTTGGAagaaaagtttcaaacactCGTT
TAAATATTCTGCTTTCCTATCTTTAATTATGTCTAAAATGGTAGCTTGAA
TGAGTGAATGAATTGTAACAATGTATTCTCCTTGATTTGACTTGCGTTTG
GTGATGAGAGACATGCTTTCAAGTTGGCAAAGAGCTGAATCCAACTCAAG
CTTCGATTCTCCTGCAGTGAGAATTTCCACCACAGGCAATGGTATTTGCT
CAGTCTCCAAAAGACACAGCCGTTTGAGAATCTCAATAGCCAATTCGCCA
TCTCCAATCTCATTTGAGCATCTCCTTAGGTTTATCCTTACTCCAGCGAT
AGCAGAAAGCCCTTCAGGCAGACTGGATACATTCCTCTGCAACAAGTGTG
CTTTTTCCTCTTTGAAAGTTGCAATCAGCTCATCAGGATTTAATAAGGAG
CGGTTCAGAGCTGTAATGAATTGCTGCAGAGTTAAAGGATGACCTCCAGC
CAGTTTTATAATCTCCTGGATCTGTTGGTCAGTAAGGATAGATTGGCATT
GTGAAGCAAGTAGTTTCTTTGACTCAACTTTAGAAAAAGATAGCATTTGG
ATTCTTTCGAAGTCTTGGGATGGCCAATCTGCTTTCTGCGATGTTATTAT
AACAGTGGTATCCTTGAATGTTGGAAGGAACTTTTTGACCACCCCTAAGT
CCCATGCATCGTCGAATACAAAAAGAACTTTCTGATCACGAAGATAATTA
TAAACATTAGCGAGAATGTAGTTGATTGATTTGTTGGTGCCATCTGGTTC
TTTGATGTCAAGATTCAAGAGTTCTGCAATTTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005463XLOC_005463Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009772-proteinTCONS_00009772-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009772-exon-sc0000098-1491911889:241515..243203TCONS_00009772-exon-sc0000098-1491911889:241515..243203Clytia hemisphaericaexon
TCONS_00009772-exon-sc0000098-1510915933:241515..243203TCONS_00009772-exon-sc0000098-1510915933:241515..243203Clytia hemisphaericaexon
TCONS_00009772-exon-sc0000098-1575043694:241515..243203TCONS_00009772-exon-sc0000098-1575043694:241515..243203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:241515..243203 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0404178	0.0875116	0	0	0.10218	0.487422	0.19463	0.269002	0.428057	0.318709	0.057728	0.821507	0.603172	1.203	1.52806	0.596696	0.996001	1.46246	0.920931	0.267258	0.332795	0.14603	0.238934	1.4945	0.898175	0	0	1.29768	1.05693
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002151Kinesin_light
IPR019734TPR_repeat
IPR011991WHTH_DNA-bd_dom
IPR002182NB-ARC
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0005871kinesin complex
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO:0005515protein binding
GO:0043531ADP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005871 kinesin complex
molecular_function GO:0043531 ADP binding
molecular_function GO:0003777 microtubule motor activity
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00009772 vs. Swiss-Prot (Human)
Match: KLC4 (Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 5.019e-22
Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 2 
Query: 1091 QGKYIIARQTYEIILSEETETIGSEHSNTLSTNHHIAICYLRQGKYDIAKSILEKNLSKQNDVLGPLHVETLRTIHCIALCHDEKGEYDKALKIYNDVLDKRIQVLGDHHPNTLKTKNNIGVCYDNMGDYEQALKIYQEVLDKRIQVLGDHHPDTLTTKHNIGFCYDNMGDYEQALKIYQEVLDK-QIQVLG----DHHP 1675
            QG+Y +A    +  L +   T G  H +  +  + +A+ Y  Q KY  A  +L   LS +   LGP H     T++ +A+ + ++G+Y +A  +    L+ R +VLG +HP+  K  NN+ +   N G YE   + YQ  L      LG  +P+   TK+N+  CY   G Y +A  +Y+E+L +  +Q  G    DH P
Sbjct:  224 QGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHVQEFGSVDDDHKP 423

HSP 2 Score: 92.8189 bits (229), Expect = 1.155e-19
Identity = 54/174 (31.03%), Postives = 84/174 (48.28%), Query Frame = 2 
Query: 1157 GSEHSNTLSTNHHIAICYLRQGKYDIAKSILEKNLSKQNDVLGPLHVETLRTIHCIALCHDEKGEYDKALKIYNDVLDKRIQVLGDHHPNTLKTKNNIGVCYDNMGDYEQALKIYQEVLDKRIQVLGDHHPDTLTTKHNIGFCYDNMGDYEQALKIYQEVLDKQIQVLGDHHPD 1678
            G E    L T H++ I Y  QG+Y++A  + ++ L       G  H +    ++ +AL + ++ +Y +A  + ND L  R   LG  HP    T NN+ V Y   G Y++A  + Q  L+ R +VLG +HPD     +N+     N G YE   + YQ  L      LG  +P+
Sbjct:  204 GYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPN 377
The following BLAST results are available for this feature:
BLAST of TCONS_00009772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLC45.019e-2231.00Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1... [more]
back to top