TCONS_00009774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009774
Unique NameTCONS_00009774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009774 ID=TCONS_00009774|Name=TCONS_00009774|organism=Clytia hemisphaerica|type=transcript|length=1515bp
CAATGCCAATCTATCCTTACTGACCAACAGATCCAGGAGATTATCAAACT
GGCTGGAGGTCATCCTTTAACTCTGCAGCAATTCATTACAGCTCTGAACC
GCTCCTTATTAAATCCTGATGAGCTGATTGCAACTTTCAAAGAGGAAAAA
GCACACTTGTTGCAGAGGAATGTATCCAGTCTGCCTGAAGGACTTTCTGC
TATCGCTGGAGTAAGGATAAACGTAAGGAGATGCTCAAATGAGGTTGGAG
ATGGTGAATTGGCTATTGAGATTCTCAAACGGCTGTGTCTTTTAGAGACT
GAGCAAATACCAATGTCTGTGGTGGAAATTCTCACTGCAGGAGAATCGAA
GCTTGAGGTGGATTCAGCTCTTTGCCAACTTGAAAGCATGTCTCTCATCA
CCAAACGCAAGTCAAATCAAGGAGAATATAATATTACAATTCATTCACTC
ATTCAAGCTACCATTTTAGACATAATTAAAGATAGGAAAGCAGAATATTT
AAACGagtgtttgaaacttttctTCCAAGAAAtcgatcgagaaaaaaaat
cattttctatccATCACACTGATTttggaaggaaatatttcaaccaTATT
GTTAAGATCATATCATCGAAAGGTGCTGATGGAAACCTTTATAGAATGAT
CGCTGAGAAAATCAGTGACATCGAAAACATCATGTTGGCAAAAGCCGAGT
ATGAAAGAATCTCTCAAATCACAGACACACTTTTGACGAGCTGCACCTTT
GACACAGAAACACAATTGACTATCCAAAAACTCAGTGCTTCATCCTTATT
CAAACAAGGAAAGTACGCAATTGCGCGGCAAACATATGAAAGAATTCTCT
CAGAAGAAACAGAAACGATCGGCTTGGAGCATTCTAACACGCTATCAACA
AACCACCAGATAGCAATTTGTTACCTGTGGCAAGGTAAATATGATATAGC
AAAATCCATCCTTGAGAAAAACCTTGCGAAGCAAAATGATGTACTCGGGC
CATTACACGTGGAATCACTGAGAACGCTCCACTATATCGCATTATGTCat
tataaaaaaggaaaatatgacaaagctttgaaaatttataacgAGGTTCT
GGATAAACGAATACAAGTATTGGGTGATCACCATCCGGATACTTTGAAAA
CGAAACACAACATTGGTCTTTGTTATGGTAAGATGGACGATTACGagcaa
gctttgaaaatttaCCAGGAGGTTCTGGATAAAAAAATACAAGTATTGGG
TGATCACCATCCGGATACTTTAAAAACGAAACACAACATTGGTTCTCCTT
ATCGAAAGAAAGGAGATTACGAGCAAGCTTTAAAAATTTATCAGGAGGTT
CTGGATAAAGAAATACAAGTATTGGGTGATCACCATCAGGATACTTTGAA
AACGAAACACAACATTGGTCTTTGTTATGGTAAGATGGACGATTACGagc
aagctttgaaaatttaCCAGGAGGTTCTGGATAAAAAAATACAAGTATTG
GGTGATCACCATCCG
Run BLAST on NCBI

protein sequence of TCONS_00009774-protein

>TCONS_00009774-protein ID=TCONS_00009774-protein|Name=TCONS_00009774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
QCQSILTDQQIQEIIKLAGGHPLTLQQFITALNRSLLNPDELIATFKEEK
AHLLQRNVSSLPEGLSAIAGVRINVRRCSNEVGDGELAIEILKRLCLLET
EQIPMSVVEILTAGESKLEVDSALCQLESMSLITKRKSNQGEYNITIHSL
IQATILDIIKDRKAEYLNECLKLFFQEIDREKKSFSIHHTDFGRKYFNHI
VKIISSKGADGNLYRMIAEKISDIENIMLAKAEYERISQITDTLLTSCTF
DTETQLTIQKLSASSLFKQGKYAIARQTYERILSEETETIGLEHSNTLST
NHQIAICYLWQGKYDIAKSILEKNLAKQNDVLGPLHVESLRTLHYIALCH
YKKGKYDKALKIYNEVLDKRIQVLGDHHPDTLKTKHNIGLCYGKMDDYEQ
ALKIYQEVLDKKIQVLGDHHPDTLKTKHNIGSPYRKKGDYEQALKIYQEV
LDKEIQVLGDHHQDTLKTKHNIGLCYGKMDDYEQALKIYQEVLDKKIQVL
GDHHP
Run BLAST on NCBI

transcript from alignment at sc0000098:275979..277493

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009774 ID=TCONS_00009774|Name=TCONS_00009774|organism=Clytia hemisphaerica|type=transcript|length=1515bp|location=Sequence derived from alignment at sc0000098:275979..277493 (Clytia hemisphaerica)
CGGATGGTGATCACCCAATACTTGTATTTTTTTATCCAGAACCTCCTGGt
aaattttcaaagcttgctCGTAATCGTCCATCTTACCATAACAAAGACCA
ATGTTGTGTTTCGTTTTCAAAGTATCCTGATGGTGATCACCCAATACTTG
TATTTCTTTATCCAGAACCTCCTGATAAATTTTTAAAGCTTGCTCGTAAT
CTCCTTTCTTTCGATAAGGAGAACCAATGTTGTGTTTCGTTTTTAAAGTA
TCCGGATGGTGATCACCCAATACTTGTATTTTTTTATCCAGAACCTCCTG
GtaaattttcaaagcttgctCGTAATCGTCCATCTTACCATAACAAAGAC
CAATGTTGTGTTTCGTTTTCAAAGTATCCGGATGGTGATCACCCAATACT
TGTATTCGTTTATCCAGAACCTcgttataaattttcaaagctttgtcata
ttttccttttttataatGACATAATGCGATATAGTGGAGCGTTCTCAGTG
ATTCCACGTGTAATGGCCCGAGTACATCATTTTGCTTCGCAAGGTTTTTC
TCAAGGATGGATTTTGCTATATCATATTTACCTTGCCACAGGTAACAAAT
TGCTATCTGGTGGTTTGTTGATAGCGTGTTAGAATGCTCCAAGCCGATCG
TTTCTGTTTCTTCTGAGAGAATTCTTTCATATGTTTGCCGCGCAATTGCG
TACTTTCCTTGTTTGAATAAGGATGAAGCACTGAGTTTTTGGATAGTCAA
TTGTGTTTCTGTGTCAAAGGTGCAGCTCGTCAAAAGTGTGTCTGTGATTT
GAGAGATTCTTTCATACTCGGCTTTTGCCAACATGATGTTTTCGATGTCA
CTGATTTTCTCAGCGATCATTCTATAAAGGTTTCCATCAGCACCTTTCGA
TGATATGATCTTAACAATAtggttgaaatatttccttccaaAATCAGTGT
GATggatagaaaatgattttttttctcgatcgaTTTCTTGGAagaaaagt
ttcaaacactCGTTTAAATATTCTGCTTTCCTATCTTTAATTATGTCTAA
AATGGTAGCTTGAATGAGTGAATGAATTGTAATATTATATTCTCCTTGAT
TTGACTTGCGTTTGGTGATGAGAGACATGCTTTCAAGTTGGCAAAGAGCT
GAATCCACCTCAAGCTTCGATTCTCCTGCAGTGAGAATTTCCACCACAGA
CATTGGTATTTGCTCAGTCTCTAAAAGACACAGCCGTTTGAGAATCTCAA
TAGCCAATTCACCATCTCCAACCTCATTTGAGCATCTCCTTACGTTTATC
CTTACTCCAGCGATAGCAGAAAGTCCTTCAGGCAGACTGGATACATTCCT
CTGCAACAAGTGTGCTTTTTCCTCTTTGAAAGTTGCAATCAGCTCATCAG
GATTTAATAAGGAGCGGTTCAGAGCTGTAATGAATTGCTGCAGAGTTAAA
GGATGACCTCCAGCCAGTTTGATAATCTCCTGGATCTGTTGGTCAGTAAG
GATAGATTGGCATTG

Coding sequence (CDS) from alignment at sc0000098:275979..277493

>TCONS_00009774 ID=TCONS_00009774|Name=TCONS_00009774|organism=Clytia hemisphaerica|type=CDS|length=1515bp|location=Sequence derived from alignment at sc0000098:275979..277493 (Clytia hemisphaerica)
CGGATGGTGATCACCCAATACTTGTATTTTTTTATCCAGAACCTCCTGGt
aaattttcaaagcttgctCGTAATCGTCCATCTTACCATAACAAAGACCA
ATGTTGTGTTTCGTTTTCAAAGTATCCTGATGGTGATCACCCAATACTTG
TATTTCTTTATCCAGAACCTCCTGATAAATTTTTAAAGCTTGCTCGTAAT
CTCCTTTCTTTCGATAAGGAGAACCAATGTTGTGTTTCGTTTTTAAAGTA
TCCGGATGGTGATCACCCAATACTTGTATTTTTTTATCCAGAACCTCCTG
GtaaattttcaaagcttgctCGTAATCGTCCATCTTACCATAACAAAGAC
CAATGTTGTGTTTCGTTTTCAAAGTATCCGGATGGTGATCACCCAATACT
TGTATTCGTTTATCCAGAACCTcgttataaattttcaaagctttgtcata
ttttccttttttataatGACATAATGCGATATAGTGGAGCGTTCTCAGTG
ATTCCACGTGTAATGGCCCGAGTACATCATTTTGCTTCGCAAGGTTTTTC
TCAAGGATGGATTTTGCTATATCATATTTACCTTGCCACAGGTAACAAAT
TGCTATCTGGTGGTTTGTTGATAGCGTGTTAGAATGCTCCAAGCCGATCG
TTTCTGTTTCTTCTGAGAGAATTCTTTCATATGTTTGCCGCGCAATTGCG
TACTTTCCTTGTTTGAATAAGGATGAAGCACTGAGTTTTTGGATAGTCAA
TTGTGTTTCTGTGTCAAAGGTGCAGCTCGTCAAAAGTGTGTCTGTGATTT
GAGAGATTCTTTCATACTCGGCTTTTGCCAACATGATGTTTTCGATGTCA
CTGATTTTCTCAGCGATCATTCTATAAAGGTTTCCATCAGCACCTTTCGA
TGATATGATCTTAACAATAtggttgaaatatttccttccaaAATCAGTGT
GATggatagaaaatgattttttttctcgatcgaTTTCTTGGAagaaaagt
ttcaaacactCGTTTAAATATTCTGCTTTCCTATCTTTAATTATGTCTAA
AATGGTAGCTTGAATGAGTGAATGAATTGTAATATTATATTCTCCTTGAT
TTGACTTGCGTTTGGTGATGAGAGACATGCTTTCAAGTTGGCAAAGAGCT
GAATCCACCTCAAGCTTCGATTCTCCTGCAGTGAGAATTTCCACCACAGA
CATTGGTATTTGCTCAGTCTCTAAAAGACACAGCCGTTTGAGAATCTCAA
TAGCCAATTCACCATCTCCAACCTCATTTGAGCATCTCCTTACGTTTATC
CTTACTCCAGCGATAGCAGAAAGTCCTTCAGGCAGACTGGATACATTCCT
CTGCAACAAGTGTGCTTTTTCCTCTTTGAAAGTTGCAATCAGCTCATCAG
GATTTAATAAGGAGCGGTTCAGAGCTGTAATGAATTGCTGCAGAGTTAAA
GGATGACCTCCAGCCAGTTTGATAATCTCCTGGATCTGTTGGTCAGTAAG
GATAGATTGGCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005465XLOC_005465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009774-exon-sc0000098-1491911889:275979..277493TCONS_00009774-exon-sc0000098-1491911889:275979..277493Clytia hemisphaericaexon
TCONS_00009774-exon-sc0000098-1510915933:275979..277493TCONS_00009774-exon-sc0000098-1510915933:275979..277493Clytia hemisphaericaexon
TCONS_00009774-exon-sc0000098-1575043694:275979..277493TCONS_00009774-exon-sc0000098-1575043694:275979..277493Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009774-proteinTCONS_00009774-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:275979..277493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0390076	0.150225	0.161965	0.042411	0	0	0.733652	0.860727	0.220194	0.635951	0.780324	0.380341	0.792303	1.16887	1.30786	1.38792	0.442529	0.893996	1.29711	1.42525	0.467882	0.297878	0	0.195436	1.75142	1.02395	0.0592048	0.039753	1.17741	1.0072
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002151Kinesin_light
IPR019734TPR_repeat
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005871kinesin complex
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005871 kinesin complex
molecular_function GO:0003777 microtubule motor activity
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00009774 vs. Swiss-Prot (Human)
Match: KLC4 (Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 8.706e-25
Identity = 68/220 (30.91%), Postives = 109/220 (49.55%), Query Frame = 1 
Query:  871 GLEHSNTLSTNHQIAICYLWQGKYDIAKSILEKNLAKQNDVLGPLHVESLRTLHYIALCHYKKGKYDKALKIYNEVLDKRIQVLGDHHPDTLKTKHNIGLCYGKMDDYEQALKIYQEVLDKKIQVLGDHHPDTLKTKHNIGSPYRKKGDYEQALKIYQEVLDKEIQVLGDHHQDTLKTKHNIGLCYGKMDDYEQALKIYQEVLDKK-IQVLG----DHHP 1515
            G E    L T H + I Y  QG+Y++A  + ++ L       G  H +    L+ +AL +  + KY +A  + N+ L  R   LG  HP    T +N+ + YGK   Y++A  + Q  L+ + +VLG +HPD  K  +N+    + +G YE   + YQ  L      LG  + +  +TK+N+  CY K   Y +A  +Y+E+L +  +Q  G    DH P
Sbjct:  204 GYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHVQEFGSVDDDHKP 423

HSP 2 Score: 99.3673 bits (246), Expect = 6.603e-22
Identity = 71/248 (28.63%), Postives = 122/248 (49.19%), Query Frame = 1 
Query:  805 QGKYAIARQTYERILSEETETIGLEHSNTLSTNHQIAICYLWQGKYDIAKSILEKNLAKQNDVLGPLHVESLRTLHYIALCHYKKGKYDKALKIYNEVLDKRIQVLGDHHPDTLKTKHNIGLCYGKMDDYEQALKIYQEVLDKKIQVLGDHHPDTLKTKHNIGSPYRKKGDYEQALKIYQEVLDKE-IQVLG----DH---------HQDTLKTKHN-IGLCYGKMDDYEQALKIYQEVLDKKIQVLG 1503
            QG+Y +A    ++ L +   T G  H +  +  + +A+ Y  Q KY  A  +L   L+ +   LGP H     TL+ +A+ + K+GKY +A  +    L+ R +VLG +HPD  K  +N+ L       YE   + YQ  L      LG  +P+  +TK+N+ S Y K+G Y +A  +Y+E+L +  +Q  G    DH          ++  K++H+  G  Y +   + +A K+    ++  ++ LG
Sbjct:  224 QGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHVQEFGSVDDDHKPIWMHAEEREEMSKSRHHEGGTPYAEYGGWYKACKVSSPTVNTTLRNLG 471
The following BLAST results are available for this feature:
BLAST of TCONS_00009774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLC48.706e-2530.91Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1... [more]
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