TCONS_00009775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009775
Unique NameTCONS_00009775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009775 ID=TCONS_00009775|Name=TCONS_00009775|organism=Clytia hemisphaerica|type=transcript|length=2592bp
aggtacggaaaatcttgtgtttacttacGAAACTGCCTACATTTCCGAAG
CTTAAATTTCAACTACACACTTGAAGTCCTGGTCTGTTCCGCTaaaaaag
tggcaaaggaatcttataagtgcagaaatgggaatcttatgcaaaacgtC
GGCTCAAAGTTGGATTTCTAAGTTCTAATTTTCATCCTGCTCGTTTTCCC
GTTTAACAAGCACTCCACAACAACAACTCCACTGATGTATGATATTGATT
CGTTTATTCTCTCTCTCTTACCAGGAGGTGAATATTAACATAGCCCAACA
TAATACAGAGTCGGTTTGTCTCTTTCATGATTTAACAACTCTGCTTTTTA
AGCACTGAAAAATTCTCCAAACATCTGTATTTGAAAGTTACTGTATACAG
AAGTGTTTCAAGTTATTTGCCAAAGTCATGTAACTTGTGAGTGAAAATCT
GCAATCTGCCATCTTACACAAATCGAATAGTtccttccataatggcggac
gcTACGTAACTTAGCCCACACTTTGAAACCTCTATtatagcctatttcat
aggattcgtgtatATGTTTCATTCAATTAGCAGaagaaaatacccaaaaa
agtGCAGATTTCCCTTTAAGAAAGTCGTTAAAATTGTTCTTCGTCATCAT
TTATTCAATTAACTTTGGAATTCAACAGTAGAAAATAAAACCTGAAGGCT
GAATAGAATACTTTGGCCGTAAGGTGTGTAGAGGTTAGATAGGAAATCTT
ATCTAATAAAATTACAATAAGATTTCAGAGCTTGACCAACTAGAAGCTTC
acggattttcgaaaatattagCAACAATATTGTTTGCTTAGAAAagctta
aagcactccatctagctCTTCgcgctttacagaaatctgtgacTAAAACA
CGAATCCTTATGAAATAGGCTATAATAGAAAATTCTAAAGTTATTCCATT
CTCAGAATAAAAAGAAATGGAAGATTTCCTATCCATCAGATTCATCGAGG
CAATCATCCATCCATTGATGAATGGAAAACGATTTATCCCGAAAAGCATC
GAAAATCCGTTTTCGTTTCACCGGATCACCGTGGAAAAAATATTCACCAT
CTTTCGTTATGAACATGTCCGGACGGATACCATACCGCTCTGGATCGTCC
ATCTCACGCCGGTAATATCGCTCATTTTCATGCAACGGAGCCGGTGATGT
AAACCCCCTGGAATCGTGTAAAACTGGTGGTGATAAAGTACGGAATTCGT
CAACGAGTTCCATCGGAGACGGGGGTCGTCGACATCTTTTTGAATTCTCA
TGAATGAACCCTCTGTGAAGATCTAAGAACTCAGACACCCATACAGGAGA
TACTTCAAAAATGTGTGAATGTTTTTTTGCTTCACGGTAAACCAATTCGG
ATAGCATAATCCGATCGGATGAACGTTCGATAAAATCGAATAATTTcatt
tcaagatggcggacaaCTCTCATTTCATCTTTTGCAACTAACTCAAAATA
ATGATCCATTTCAAAGTCATTCAGTTCAGCTGATACAGTATTCACTGTTG
GAGTTCGGTGGTGCCGAGTCAGTTTGGATGTTACTTTCATCTCATCTGTT
GCAGCATCTTCATCAGATTCATTTCCTAAACGTTTCAGGAACGTATCAAT
CCATTTAGAACTCGGGCTGAAACTTACATCAATTGTTTTAGCTTCCTGCA
GAATCAAATGTCGATCAATTCTCACTCCGTCATTCACCAGAGCCATCAAA
TGATCACcaagaattttctcaaaatctaccACATCTTTCCCTTTATCAGC
CATTGTAACTTTTCTCCGTCCACCGCCTTTTAATCGCTTAGTACTCCCAT
TGAAATTCTGGACTTGCTCTACAAGCCGACTTTTCTGGTTCTTCCATTCT
TGGACTCGTCTCCGGTGGACACCATATTCTTCTGCCGCTTTTGAGTTTGA
ATGAATCTCAGCATATTCCACAACTTTCAGTTTGAAGCTACACGTGTAAC
TTTTACGCTGGTCTTTACCGCCACCGCCACCGCCACCGCCACCGCCGTGA
TTTGTGATTTTATCATCGGTCATTTTTGaaaggtttttaaatttgcataC
GTTTCAAATTCGTTTACTCTAGTTTGCGTGACTTATTGTCCAAGATAATT
AATGCATCCGAAGGCCTTCTCTTTTTCAGTCCAAGCTCAGTATTCCATTG
TCCCTTTATTCAATAATATAGTGCAACCGCTTCAAATTCGAAATTCTTCC
GATACAGTGTTCAGTTTGAAGTTAATGACCACTAATCAAACACCAATTAA
TATTCAAAGCCTAATGACTTTATTCCAATATGTAAGTCCCCAAAAAAGAG
TGCGTTAAAAACGTTCCGTTGAGAATAATGAAAAGaattattgttttctt
ttatgCAGCTTAATAAACTAAGCAATCATATTGAGCATAAAAGTTATACG
CTCTTTGTTTCAGTTGTTTCTGTTTCGCAATTATAGCGCATGCTGCTTAT
TCAAAATAGAAGAATTTTATGATCTTCGTTTTATTCTTCAgccgtcttca
aaaatgcaaatgATTTATGAAAATGATTACACTGTAGATGAG
Run BLAST on NCBI

protein sequence of TCONS_00009775-protein

>TCONS_00009775-protein ID=TCONS_00009775-protein|Name=TCONS_00009775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MTDDKITNHGGGGGGGGGGKDQRKSYTCSFKLKVVEYAEIHSNSKAAEEY
GVHRRRVQEWKNQKSRLVEQVQNFNGSTKRLKGGGRRKVTMADKGKDVVD
FEKILGDHLMALVNDGVRIDRHLILQEAKTIDVSFSPSSKWIDTFLKRLG
NESDEDAATDEMKVTSKLTRHHRTPTVNTVSAELNDFEMDHYFELVAKDE
MRVVRHLEMKLFDFIERSSDRIMLSELVYREAKKHSHIFEVSPVWVSEFL
DLHRGFIHENSKRCRRPPSPMELVDEFRTLSPPVLHDSRGFTSPAPLHEN
ERYYRREMDDPERYGIRPDMFITKDGEYFFHGDPVKRKRIFDAFRDKSFS
IHQWMDDCLDESDG
Run BLAST on NCBI

transcript from alignment at sc0000098:346700..349291

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009775 ID=TCONS_00009775|Name=TCONS_00009775|organism=Clytia hemisphaerica|type=transcript|length=2592bp|location=Sequence derived from alignment at sc0000098:346700..349291 (Clytia hemisphaerica)
CTCATCTACAGTGTAATCATTTTCATAAATcatttgcatttttgaagacg
gcTGAAGAATAAAACGAAGATCATAAAATTCTTCTATTTTGAATAAGCAG
CATGCGCTATAATTGCGAAACAGAAACAACTGAAACAAAGAGCGTATAAC
TTTTATGCTCAATATGATTGCTTAGTTTATTAAGCTGcataaaagaaaac
aataattCTTTTCATTATTCTCAACGGAACGTTTTTAACGCACTCTTTTT
TGGGGACTTACATATTGGAATAAAGTCATTAGGCTTTGAATATTAATTGG
TGTTTGATTAGTGGTCATTAACTTCAAACTGAACACTGTATCGGAAGAAT
TTCGAATTTGAAGCGGTTGCACTATATTATTGAATAAAGGGACAATGGAA
TACTGAGCTTGGACTGAAAAAGAGAAGGCCTTCGGATGCATTAATTATCT
TGGACAATAAGTCACGCAAACTAGAGTAAACGAATTTGAAACGtatgcaa
atttaaaaacctttCAAAAATGACCGATGATAAAATCACAAATCACGGCG
GTGGCGGTGGCGGTGGCGGTGGCGGTAAAGACCAGCGTAAAAGTTACACG
TGTAGCTTCAAACTGAAAGTTGTGGAATATGCTGAGATTCATTCAAACTC
AAAAGCGGCAGAAGAATATGGTGTCCACCGGAGACGAGTCCAAGAATGGA
AGAACCAGAAAAGTCGGCTTGTAGAGCAAGTCCAGAATTTCAATGGGAGT
ACTAAGCGATTAAAAGGCGGTGGACGGAGAAAAGTTACAATGGCTGATAA
AGGGAAAGATGTggtagattttgagaaaattcttgGTGATCATTTGATGG
CTCTGGTGAATGACGGAGTGAGAATTGATCGACATTTGATTCTGCAGGAA
GCTAAAACAATTGATGTAAGTTTCAGCCCGAGTTCTAAATGGATTGATAC
GTTCCTGAAACGTTTAGGAAATGAATCTGATGAAGATGCTGCAACAGATG
AGATGAAAGTAACATCCAAACTGACTCGGCACCACCGAACTCCAACAGTG
AATACTGTATCAGCTGAACTGAATGACTTTGAAATGGATCATTATTTTGA
GTTAGTTGCAAAAGATGAAATGAGAGttgtccgccatcttgaaatgAAAT
TATTCGATTTTATCGAACGTTCATCCGATCGGATTATGCTATCCGAATTG
GTTTACCGTGAAGCAAAAAAACATTCACACATTTTTGAAGTATCTCCTGT
ATGGGTGTCTGAGTTCTTAGATCTTCACAGAGGGTTCATTCATGAGAATT
CAAAAAGATGTCGACGACCCCCGTCTCCGATGGAACTCGTTGACGAATTC
CGTACTTTATCACCACCAGTTTTACACGATTCCAGGGGGTTTACATCACC
GGCTCCGTTGCATGAAAATGAGCGATATTACCGGCGTGAGATGGACGATC
CAGAGCGGTATGGTATCCGTCCGGACATGTTCATAACGAAAGATGGTGAA
TATTTTTTCCACGGTGATCCGGTGAAACGAAAACGGATTTTCGATGCTTT
TCGGGATAAATCGTTTTCCATTCATCAATGGATGGATGATTGCCTCGATG
AATCTGATGGATAGGAAATCTTCCATTTCTTTTTATTCTGAGAATGGAAT
AACTTTAGAATTTTCTATTATAGCCTATTTCATAAGGATTCGTGTTTTAg
tcacagatttctgtaaagcgcGAAGagctagatggagtgctttaagctTT
TCTAAGCAAACAATATTGTTGctaatattttcgaaaatccgtGAAGCTTC
TAGTTGGTCAAGCTCTGAAATCTTATTGTAATTTTATTAGATAAGATTTC
CTATCTAACCTCTACACACCTTACGGCCAAAGTATTCTATTCAGCCTTCA
GGTTTTATTTTCTACTGTTGAATTCCAAAGTTAATTGAATAAATGATGAC
GAAGAACAATTTTAACGACTTTCTTAAAGGGAAATCTGCacttttttggg
tattttcttCTGCTAATTGAATGAAACATatacacgaatcctatgaaata
ggctataATAGAGGTTTCAAAGTGTGGGCTAAGTTACGTAgcgtccgcca
ttatggaaggaACTATTCGATTTGTGTAAGATGGCAGATTGCAGATTTTC
ACTCACAAGTTACATGACTTTGGCAAATAACTTGAAACACTTCTGTATAC
AGTAACTTTCAAATACAGATGTTTGGAGAATTTTTCAGTGCTTAAAAAGC
AGAGTTGTTAAATCATGAAAGAGACAAACCGACTCTGTATTATGTTGGGC
TATGTTAATATTCACCTCCTGGTAAGAGAGAGAGAATAAACGAATCAATA
TCATACATCAGTGGAGTTGTTGTTGTGGAGTGCTTGTTAAACGGGAAAAC
GAGCAGGATGAAAATTAGAACTTAGAAATCCAACTTTGAGCCGacgtttt
gcataagattcccatttctgcacttataagattcctttgccacttttttA
GCGGAACAGACCAGGACTTCAAGTGTGTAGTTGAAATTTAAGCTTCGGAA
ATGTAGGCAGTTTCgtaagtaaacacaagattttccgtacct

Coding sequence (CDS) from alignment at sc0000098:346700..349291

>TCONS_00009775 ID=TCONS_00009775|Name=TCONS_00009775|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at sc0000098:346700..349291 (Clytia hemisphaerica)
ATGACCGATGATAAAATCACAAATCACGGCGGTGGCGGTGGCGGTGGCGG
TGGCGGTAAAGACCAGCGTAAAAGTTACACGTGTAGCTTCAAACTGAAAG
TTGTGGAATATGCTGAGATTCATTCAAACTCAAAAGCGGCAGAAGAATAT
GGTGTCCACCGGAGACGAGTCCAAGAATGGAAGAACCAGAAAAGTCGGCT
TGTAGAGCAAGTCCAGAATTTCAATGGGAGTACTAAGCGATTAAAAGGCG
GTGGACGGAGAAAAGTTACAATGGCTGATAAAGGGAAAGATGTggtagat
tttgagaaaattcttgGTGATCATTTGATGGCTCTGGTGAATGACGGAGT
GAGAATTGATCGACATTTGATTCTGCAGGAAGCTAAAACAATTGATGTAA
GTTTCAGCCCGAGTTCTAAATGGATTGATACGTTCCTGAAACGTTTAGGA
AATGAATCTGATGAAGATGCTGCAACAGATGAGATGAAAGTAACATCCAA
ACTGACTCGGCACCACCGAACTCCAACAGTGAATACTGTATCAGCTGAAC
TGAATGACTTTGAAATGGATCATTATTTTGAGTTAGTTGCAAAAGATGAA
ATGAGAGttgtccgccatcttgaaatgAAATTATTCGATTTTATCGAACG
TTCATCCGATCGGATTATGCTATCCGAATTGGTTTACCGTGAAGCAAAAA
AACATTCACACATTTTTGAAGTATCTCCTGTATGGGTGTCTGAGTTCTTA
GATCTTCACAGAGGGTTCATTCATGAGAATTCAAAAAGATGTCGACGACC
CCCGTCTCCGATGGAACTCGTTGACGAATTCCGTACTTTATCACCACCAG
TTTTACACGATTCCAGGGGGTTTACATCACCGGCTCCGTTGCATGAAAAT
GAGCGATATTACCGGCGTGAGATGGACGATCCAGAGCGGTATGGTATCCG
TCCGGACATGTTCATAACGAAAGATGGTGAATATTTTTTCCACGGTGATC
CGGTGAAACGAAAACGGATTTTCGATGCTTTTCGGGATAAATCGTTTTCC
ATTCATCAATGGATGGATGATTGCCTCGATGAATCTGATGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005466XLOC_005466Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009775-proteinTCONS_00009775-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009775-exon-sc0000098-1491911889:346700..349291TCONS_00009775-exon-sc0000098-1491911889:346700..349291Clytia hemisphaericaexon
TCONS_00009775-exon-sc0000098-1510915933:346700..349291TCONS_00009775-exon-sc0000098-1510915933:346700..349291Clytia hemisphaericaexon
TCONS_00009775-exon-sc0000098-1575043694:346700..349291TCONS_00009775-exon-sc0000098-1575043694:346700..349291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:346700..349291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0446635	0.058072	0.0337136	0.0164917	0.14054	0.222113	1.33985	1.37978	0.138003	0.155399	0.708919	0.376779	6.95081	5.06939	2.70522	3.45652	1.86643	1.44337	1.59844	2.38477	2.20235	2.75929	0.580384	1.39673	1.00702	2.79608	0.571597	0.217866	0.0165244	0.0168357
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018586Brinker_DNA-bd
IPR011991WHTH_DNA-bd_dom
IPR010921Trp_repressor/repl_initiator
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0043565 sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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