TCONS_00009801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009801
Unique NameTCONS_00009801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009801 ID=TCONS_00009801|Name=TCONS_00009801|organism=Clytia hemisphaerica|type=transcript|length=554bp
aaagaaaacgcaCCAAATGCATAATGTTGGGTTCATTATACAGTCAAGAA
ATTTTTTAACTTCCAATTCGgttttttagccaaaaaaagaagaaattggc
AAAGTTTTTGAGAGGAATGgGTGGCGTTGAGTTGGGTGGTATTTACGTGA
AAGGGCTTTTACCTGGTGGGTCAGCTGATAACAGTCGCAAAATTGTGAAA
GGTGATCGTTTGTTAGAAGTCAATGGAATCAGTGTGGAAGCTCTTTCAAA
GAAACAAGCCAACGATCAACTACGAAAAGCTACTCAAGTGTCTAACTTCA
TTTTGGAACATAACACTGTTTACGATAATCTCATATTGCCAGAATCGGAA
TTCTTCACAGTAGAAAtccaaaagaaacaaaatggaTATGGCTTGAGTTT
GACTGGTGGACCCGAGATTGATGGAGTATACGTGAAACAGGTGCAAAGAG
ATAGCGCTGCTGAGCATGACGGAAGGAtcaaaaaagGGGATCGCTTGATA
ACTATTAATGGACGTAACGTAGAAAATTCCACACGACAACAGtgtACCAG
TATG
Run BLAST on NCBI

transcript from alignment at sc0000099:146841..153279+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009801 ID=TCONS_00009801|Name=TCONS_00009801|organism=Clytia hemisphaerica|type=transcript|length=6439bp|location=Sequence derived from alignment at sc0000099:146841..153279+ (Clytia hemisphaerica)
aaagaaaacgcaCCAAATGCATAATGTTGGGTTCATTATACAGTCAAGAA
ATTTTTTAACTTCCAATTCGgttttttagccaaaaaaagaagaaattggc
AAAGTTTTTGAGAGGAATGGTGAGAAATTTTGAGAAAGGGTTTGGTAACG
AGGTCATCAAAACAAGGTAATACTTGATGTTTGTATAATAATATTGGGTT
CAATNATGGTGAGAAATTTTGAGAAAGGGTTTGGTAACGAGGTCATCAAA
ACAAGGCAATACTTGATGTTTGTATAATAATATTGTGTtcaaatttacat
ttttattgtttcttttatttcaggGTGGCGTTGAGTTGGGTGGTATTTAC
GTGAAAGGGCTTTTACCTGGTGGGTCAGCTGATAACAGTCGCAAAATTGT
GAAAGGTAGGTAACAATCGCAAATTATTATACTGTTTGAGAGGAAATTAT
TCTAAACGTAACTGACTGGTGAAATCTTCTGCACGAAAACTTCACAGACC
AAGTtttatttaatgttttttttacgaAATTTTAGTTGATTCAACACTGA
TCTTTATAAACCAAGTCGTCATCTTTGATTGGGGTTTTTGGTAGTGTTAT
AAATTAACGTCTAGGCGCTACATCACCAAAAGATGGCCGACATAAACCCT
TGTAGAAGGCTGATTTCAAATTATCTCTATTTTGAAATCCACATTTTCTT
TCTGAACATCTTCCATAGGTGATCGTTTGTTAGAAGTCAATGGAATCAGT
GTGGAAGCTCTTTCAAAGAAACAAGCCAACGATCAACTACGAAAAGCTAC
TCAAGTGTCTAACTTCATTTTGGAACATAACACTGTTTACGATAATCTCA
TATTGCCAGAATCGGTAAGCTATTttgttaatttctttttttatgattca
aaaaacatttcggCAAATATTTTTCAGTATAAGCTTTTCGTTTcataaat
ttttattaattaattgatgatgtttttttaataaaacgaaACGCTTATGC
AGAAAAGTATTTgtcgaaatgttttttgaatcatAATTTTAACtttctgg
ctattttattataacaataatttctttttataaccCACTAAATGGCCTTA
CTCTGTAACTTCaacttttcaaatatatttatACTTAATTCTTTATTCGT
GTGGGCTAAAAAAAACAGGACGATAAGGGTCCAGACCTACCGGTTGAAAT
TGAGCGATTTCATAAGAAGCCAGTGGCCTCTAACGGGTTAACCATTACAT
AATGTTTAACGTTATTGTTTGAATTGAAGTCAATTTCATGctaaagtctg
ttccaaaaaataCCTTGTTGgacagggggggggtcggtgtaccagaaggt
ggcatgtatcctggggtgggtgggtgtttgagaaaaaaatttgtcatgta
ctacctgtgtactataagcggggtgttgggtccaaaatcgattttgattt
ttactacctgtgtaccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtaaagttg
ttctattataaattgatcaagccaagtttgtccaagatcattcttccaaa
cttcttggaatgaattgaaatcctaccagatcccactgaaatgaaggtat
gagtcaatgtaaacattcgaacatttgaattcaaacattcaacattcgta
cattagaggtgccaactctcacgcattagGTGTGAGACTCATGCATTTCT
ACATGGTctcacgtaatttttgaaaagtttgatttctcacccattttgga
tttttaagaaaaattttcctgtttttccgatttttggaaaaaagttttct
caatttcccgatttcccgatttcccgatttttggaaaaatgtttacccga
ttttccgattttcggaaaaaagtttctctatttTCCGGATTTTTCAAGGT
AGTACCCGGTAGTAAATGGGgagtatggggtggttttggtttTTTACCAG
GTACTACCTGGGTAGAAaatagggggtatggggtggttttaggatttttc
catgtagtatggtgtacttcaggggtgggtgggtgtcaagttttgaaaaa
taccttgtagtacacatacatgccgtcttctagtacactgaccccccccc
tgtgtTGGAAGATAATCTTAAGATTATTTTAAGTTTCCAAAAtctttcat
aaattttgcaaaTGAATATAaagaatgaagatgaaaaaactgattttttt
tctactgggccaaagactttattttttattttcagaaatttgaacttgag
ctgatttcaaatatattttcagaCCTGTCATATGTCTTTCTTGGATAAAA
AAACAGCTCTAAAAAGTTGGCTGTAAGTGGCCAAAAACGACCAAAAATCG
GAGGGCTGTAAATGTGCGGACAGGCAAATCTTTTGGAACAGACTTCATAG
AGAATTTTTAGTAGACTGTatacatttattttttcatcttttgaatTTAA
GGAATTCTTCACAGTAGAAAtccaaaagaaacaaaatggaTATGGCTTGA
GTTTGACTGTAAGAATATACCTAGCTGTTTAGCTTTGAATTTAGAACTAT
AACAAAATCTTTTATAATGGCGAAGTGCAgagtcaaaagaaaaaacacac
TACCCACGACACTTTAAGTTGGTTTTTCATTCAGTTTGAAATTCCAAGGG
GATTTTTATGGtttatttttagaatcattTAAACAATATTACTCATCAAC
TTTAATTCTAATATACATTTGCATTGtcattcttatgaaaaaagtctTGA
CGTCCAGTAAAGGCTAAGAACCATCGTTCAAATTATATAACTGTACTCAT
CTGCTGTTGTTTTTTAGGGTGGACCCGAGATTGATGGAGTATACGTGAAA
CAGGTGCAAAGAGATAGCGCTGCTGAGCATGACGGAAGGAtcaaaaaagg
tttaaaaactgtttttgatTACTTATCTAGACGGGTCTGGTGGTttttat
gatattcatgacgtagtGTTTTATATGGAATCACCCAtaaagctaaggct
acactgatagttttttctggcggctgcaatgcaattaANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTAAATTCTACAACTTTTAGACCAAGtaccaatccaaataaaatattc
caacaaaaatggtagcatcacgtaaaccacagttttttttcacgttttgc
ggtaatatcactttttttgcatttttcacttctagagcaaaaaaaagtgg
ggggaagttaattaaaaaatctgtcttcggctatttatcaatctatacat
cattttgaagtaatataccaaaaatcagcATCCAGAAAAATCTGTATGTG
TCACACCAGCCTCCCAAATATCGGtcacttttgccaaaaatcacgatttt
cggctaaagaaatccaatatatacaattttgaagtattttgatgataatg
TGTTCCCAGAAGCAGTTACAACATCAAAAATGGTGTAAAAGTATTCCCCA
ACTATCTAAACAACACTTTCAGTCAGTATTCTTAGCTCCTGAAGCTTTTG
AAGGGTATCGGCTACCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTGAAACTAGAT
GGCATAGTCGGCGACAGttgcaaagtttccaaaaaccgTAAGCCTTTTGA
GGCAAACTCATTGCTATCAAATCTGGTCTCTTTTGCCCGTAAGGAATGCT
AAATGTCAtcataataattccatgtgGCTGCTATGTGGCTCCTGCTATCA
TTTTGATCCATATAAGCTGTAATGAGGTGTAGAAAACacttttgcattga
atttgTCCACTTTCCATGCTCCAACctgaataaaaagtaaaaactaCTGT
AAGTTTAGGTCGACTCCGATGGTTTGTCGAGAAAAGTGGTCATAATGAca
aataaatggaatttttatgctaaaaacaaaacacaaaatataagatatac
ttactggatgttttgccattataaaaacaatgtNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCTTagaagatcactatgtcaaaaaaacgacta
tacacgtctgccggaacgtatgctcgacgactatactcgtccgccgggct
gaaaaggttaaaaaactatcagtgtagccttagcttaaTACCCCTGGCGT
TTGATTTAAATTCAAATGCCAGTGGcaaaaccaatgaagtataagcccga
cgAGCTAGAAGAGAATCTCCTTgttaggatttgaagccaacaaatcctac
caaagttgcgcggtctAGCGCGGCCTACCTACACAAATACcagattgaaa
ttaaaatttaccggtaagtttcgaaaaaaataacacttgaaaacaaagga
atcgctagatGCAATCCCTTTTTTTTTGAGAGAGGTGagtttccgtataa
aacattgcGCCATTAATATAATAAATTATAGCTTTCACCTGTTTACATTG
TGCTGGGTGGCTTGCATTTTAAACTGTCTATGGTTAAAACCTTCTGAGAA
GAAATCTAGCACGTATTCGAACCAAATTAGACTTCAATATctgcaaaata
ataaaatacttTTCCAGCAATAATGGTCAAACCTTTGGGTGTGTTTAAAG
TTTGATAGGCCGGGACTTTGTAGCTCATATTTGTTTTAATAATTGTCGCG
AAGTTAATGTTTTTATTCTCTGTTTTACTTTTTCAGGGGATCGCTTGATA
ACTATTAATGGACGTAACGTAGAAAATTCCACACGACAACAGGTACCTGG
GCACTGTTATCTTATCTTGTTAGGTTATCTAATAAGGGGCTGTAACAGTT
TCTATCTAGACAGGAACTGTTGATGAATTTTTcgagacattttttttttc
agaaatcgatttgtttataatttcttttcatcttttgagGTGGGGCATAT
AGcaactttttcttcaaaatgaaactttttgcGTGTTTTAGCGATGGCTA
AGTGATCAAAGGCGATAGCATCACAAACCAGGGTTTCGTGATTCGAACCC
CACTACTGTTCTGTTCTGTTAATGAACAACCCAGCCGGCTATCCCTGCCC
TAAAGGACCccatgaaaaatatcaaaaagaatGTCTACAAATCTTAGATT
ACTGAGCTATCCACATATTTTGCAgatctattgacctctatgaaacagaa
cttttgcTTGTActcaaaaatcgccattttcgCCCGCTGGAAAGCCTGGA
CCGGCccaggaccgggccaccgggggtaAAAAAGGGTTGGTTTCtgatat
ggaaattttttttgtttttttttgcagtgtACCAGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005484XLOC_005484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009801-exon-sc0000099-1491911889:146841..146959TCONS_00009801-exon-sc0000099-1491911889:146841..146959Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1510915933:146841..146959TCONS_00009801-exon-sc0000099-1510915933:146841..146959Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1575043694:146841..146959TCONS_00009801-exon-sc0000099-1575043694:146841..146959Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1491911889:147164..147245TCONS_00009801-exon-sc0000099-1491911889:147164..147245Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1510915933:147164..147245TCONS_00009801-exon-sc0000099-1510915933:147164..147245Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1575043694:147164..147245TCONS_00009801-exon-sc0000099-1575043694:147164..147245Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1491911889:147559..147704TCONS_00009801-exon-sc0000099-1491911889:147559..147704Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1510915933:147559..147704TCONS_00009801-exon-sc0000099-1510915933:147559..147704Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1575043694:147559..147704TCONS_00009801-exon-sc0000099-1575043694:147559..147704Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1491911889:149592..149648TCONS_00009801-exon-sc0000099-1491911889:149592..149648Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1510915933:149592..149648TCONS_00009801-exon-sc0000099-1510915933:149592..149648Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1575043694:149592..149648TCONS_00009801-exon-sc0000099-1575043694:149592..149648Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1491911889:149958..150039TCONS_00009801-exon-sc0000099-1491911889:149958..150039Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1510915933:149958..150039TCONS_00009801-exon-sc0000099-1510915933:149958..150039Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1575043694:149958..150039TCONS_00009801-exon-sc0000099-1575043694:149958..150039Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1491911889:152677..152732TCONS_00009801-exon-sc0000099-1491911889:152677..152732Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1510915933:152677..152732TCONS_00009801-exon-sc0000099-1510915933:152677..152732Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1575043694:152677..152732TCONS_00009801-exon-sc0000099-1575043694:152677..152732Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1491911889:153268..153279TCONS_00009801-exon-sc0000099-1491911889:153268..153279Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1510915933:153268..153279TCONS_00009801-exon-sc0000099-1510915933:153268..153279Clytia hemisphaericaexon
TCONS_00009801-exon-sc0000099-1575043694:153268..153279TCONS_00009801-exon-sc0000099-1575043694:153268..153279Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:146841..153279 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312492	0.782552	0	0	0.432152	1.61485	4.23452	2.83971	0	1.71003	6.05888	1.92204	3.29703	0.732805	2.7186	1.35018	1.78756	0.909972	0	2.43209	3.08892	1.50882	1.21973	2.49251	4.38373	2.92536	0.481858	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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