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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009809 ID=TCONS_00009809|Name=TCONS_00009809|organism=Clytia hemisphaerica|type=transcript|length=695bp
TTATTATTACATCATTACTCGTGAGAAATCACAACCTTTGTTTAAGGAAT
AGAGAATTCTGTTTGTTGCCATCAATTTGTACAGATGAAAGTTTTTTGAA
CCATAAGGTAGCCTAAGGATTCCGCCGAAAATGCCAACTTGCACACACAT
CAATTATCACCAAGAGGCTCAACGTAAACAAAGACAGATCGAAAGAAAAA
ATGCTGCTCTTGTCAGacttcaaaaagaaaaaGAAGAAGAGGAGAGAAGG
TTGAACGAAGAAATCCGAAGACAACAATTCGAAAAACTCGAACAAGAAGA
AAACAGACGTCTAGAACGTGAACTCCATCTTCAACAATGCGGTGGCAAAA
TCAAGCCAACAGGCTACTCAAGTAAACAAACACAAGTGAAATTTCAAACC
CAGTCCGATTTACGACACCAGTCGAAAATTTTACGAGATCATGGACTTGT
TATGGGTCACGTTAATGGACAATTTTTCTCGTAAATATATTgacaacaaa
aatatttatcttattattttttgtaatgTTTTAGTGTGTGTGATTTTAAT
GTACAAATAATGATTTGACAAAAGAGAAATATATGATTTTAAGGTGATGA
TGTTATAATATGGGTTTTGTAAtataattaaagtctgtctcaaaataatt
tgctgCTGAGataaaaatggctgtaacttttgatagaattcgaac Run BLAST on NCBI protein sequence of TCONS_00009809-protein >TCONS_00009809-protein ID=TCONS_00009809-protein|Name=TCONS_00009809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MPTCTHINYHQEAQRKQRQIERKNAALVRLQKEKEEEERRLNEEIRRQQF
EKLEQEENRRLERELHLQQCGGKIKPTGYSSKQTQVKFQTQSDLRHQSKI
LRDHGLVMGHVNGQFFS Run BLAST on NCBI transcript from alignment at sc0000099:300997..308383+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009809 ID=TCONS_00009809|Name=TCONS_00009809|organism=Clytia hemisphaerica|type=transcript|length=7387bp|location=Sequence derived from alignment at sc0000099:300997..308383+ (Clytia hemisphaerica)
TTATTATTACATCATTACTCGTGAGAAATCACAACCTTTGTTTAAGGTAG
TTATTGGTTACCGATTTGTGTTGATACTAAATTCTCTCTGTATTTGTCTC
CTTTGTAAAGAGAAGTAGAGTTACTTGTGAGTTTTTGTTGGTTAGAAAAT
TTACAGAGAAAAGAAACATCTTTTTTTGTACTACAAACTTCTTATTGAAG
AATTTCACAGAAAAAGAAGGTTTTCTTGTATATTACATTTTGTCATTTGT
ATGTGAAAAATTCTGTTTCAAGGAATAGAGAATTCTGTTTGTTGCCATCA
ATTTGTACAGATGAAAGTTTTTTGAACCATAAGGTAGCCTAAGGTAGTGA
TATTTTGATATATTATATGaccatttttaacaatttttacaaTACTTATG
AGTATTCTTTCCACTGCCACACCCTTTTGAGTTTCGGTTGTTCTAATTTT
CCGGCCCTTTGAGCATTAAACtattcttatcctgttcttattttcacgtt
gTGTTACTTTAGTCTTTGCTCCCTGGATTTGCATTTTAAGTTAATTTGCT
CAAGATTCCAGCACTAGGCTTATTAGGATTAttcatgtacacgttttttt
ataagagcatgaagccttcggatgttcttactttgagttttaagcctgaa
aatgttcttaacatgtttttattttcacctctTCAtaaatttttgctcat
tttttcctaagaaatcgggtgtttagaacccgcaaagccttagaatatta
tataaatttttcttaatatttcggccatcgaaggcTTATATATATTGCTC
TTATAATAAAACGTgaattgtttttatttggttGCATTTTCCAGGGTTCA
AAGGGTTGCCTGTAACTAAACAGGTCTTTCGATAAGCTATAAGTATACGT
AACAAGCCGTCGTTCTATTCAAACATAAGACTCCATTACCGGATCTCATA
TTTCGATGacttccaaaggatgtttccgATATTTTCCCCGGGCTAGTGGA
CGAAAAGTAGAAGGTCGATACTGGATCAGTAGTGTAGACAAGAGGGGcgt
aaaatttgtgtaggagaacagatttttatgacattacaattatcttttta
taccATTATAGAtgattacagtgtcataaaaatctgctctcctacacaaa
cttcgcgcccctcctgtctataCTACTGGGGATAATAGCTCGTGTTTTAC
TGAAAGACTGgcaactttttttgactttcttaTGTTTAAGGATTCCGCCG
AAAATGCCAACTTGCACACACATCAATTATCACCAAGAGGCTCAACGTAA
ACAAAGACAGATCGAAAGAAAAAATGCTGCTCTTGTCAGacttcaaaaag
aaaaagtaaggcTGATatacattacgtaatgttttctacggaaacacCTG
GGCTTATGGAAGTAGTGGAAAATTTAAGCATGagaaaaattgtttacatt
ttgccAATACTGGACaatccgtagaaaacattacatcatgaatacacgtt
ttttagaaTTAGAGGCACTACAAAAGCCATCACTTGCAAAGTAAATGGCT
TGAAACgtcaaaacttaattttttagccACAGGACAGGGTAAATTTTCCT
TTCGAAAATACTATACAcgttttgagatttaagccaaaatcttttttcca
atttccttagaaatcgggtgttttagagtcccaaAAACCTTAAgacgttc
ttaacttgttcttagcatttttgcGATCGAAGTCTTATACcgtttgtttt
tatataaaaacctgtaaaagagaaaattatCTAGAGAAAAGTGTTTGTCA
ATTTCGTACCCAGAGCTATTTATACCACTTGAATTTTTactgatacacgc
tttttataagaattaaccttaaatatgtattttccaaaaactaaaatgtt
aaaaaaaataactaaaagtTTCATGCACTTGCGTACAATCATCAGATATG
ACTAAAAATAgtgttgaaaagaaatttaggtaCAAGGAAAAATTCTGATT
CATTAAAAAGTGATTAAAACATGTGATGGAAGATTATTAAAAGAtcgtta
aaagataaaaaagacaAAGGTAGTAAAACTGTAGAATTCTCAAGGGTCTG
GTGGAACCTCTTTGAAGTTTTACGTAGAAATTAATTCAGATGGTTTATTT
AATAGTTTTTCCTTTGACAAAATAATGTGGTACTTTTCCGTAAGGCATAG
ATCACATAATTTGCTGCCATTTTTGTACGGTTGGGCGTGGTCGATAACTT
TCCATTTTAGAATAGCGCActgcgctgaatctaaaaatagattttatttt
tgacataatcattactctcgatgtgtttgtacgagttccaatcccatcaa
tctttgcgttaatctcttttgcacgctAATTGGATCGTTTGACAAAAGAT
ATATAACAGCTTgcacgtatctttaattgagccgcgttgaattgtgggat
tgcaactcgtacaaatgtcaaaaaaagtgaaaagtaataattatgacgta
tgcgttgcggagcgTTCGATGGTCTTATTCTTAAGAATTTAccttataag
aatatttatgatgagattggccaaaaaatagaaatatggtaagaatatca
ccatcatggagtTTGGCAacataacctaagaatgccatttttagagcatt
ttaccaTTAAATTGCCATTCATCAATCAgcaaattttcacgaaaatgtCA
AATTGAGGTATGTATTGCATGCTAGATTTAGGTTGGGTTTGGTTCCAAAT
cgaagaataccgtaagaatatttcaggatgattttcatCGGAAAGTTAAG
TGTGTAGACGTAATACCTTACGTGGATATATTCTGGCGGGGATTAAAATT
AGCGAATCCAAATTAAATCAtcgccaaaatttctaaattcggcaattcac
caaattaaatctcgccaaatttttcaaaatttccctttcaccaaattaaa
tcccatcctcgccaaaattaaaagaaaatcatgtttttaatcaattctGA
ACTTCAACAAAACACCTtaataaaaaacacttttttttgtctttcaccaa
attaaatccctgccaaaaatcgcattttggtcactcgccaaattaaatcc
acgccaaaatttatccacttaaggtataatCGTGTGCGTTTCGTGAGCAC
TATCtgaatcataaaaaagcgaATTTatggactgggttcgagtttgacTA
CTTGTTGTTTAACAAGACAGGGACAAGATTGTAAAGactttttaaaagat
ttgagGTAATTTTCTTTTCACGGACAACGTGATAAATCCTATGCAAAAGT
ATTCAAAATCTGTATATGTGTaacttaaaaaaatacttttaataGACAAT
GGCTAGCGGATTgctaaagttttaaaaaatcaggaaaaattgtgaacaac
tttttgatatgtttttactcaatttgagggtgcttgAATTTGAATGTTCC
CAAGCTTGAAAACCTGCAGTTTTCttgtaatttgcgatttttacgttttt
aggtCTTTTAGGTAAAAttgtatatatatagtatgaaaaaataaaatgtt
ttctcctgtcagaactacaaacaacaaagagtggccgaattctttttcct
cttagagagacgatgttacaatGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNag
tcctctctgggtccctctgtctttatcctggcttgggacaggctgactgt
catttaagacagtcaggcgacattaccccagcggcctgtacaagatgaca
gcaaactccaggtagactgacaggagaagaaaacaaaacatgaaTCAACA
AAGGTGTAAACACCTTAGACTCCTTTGGAGCCGACTGCACTATATATACG
GGTATATTGTATATGATTTTCGGGggttcttcaaaatcaaaagagaccta
taccacgtgatatAGCTCTTCAAACTAAAACTaatcatatcatgaatata
taaacgactggacatccatctcctttgtctttttgaagataacacagcta
gcttcgttgccgcctcgttaaaggcataaaatgaaacaatagattttgat
gatataccacttgggaataccgtgctaacaacgtcaaaacttcgacaaaa
gtctctgttgttctactcttctcaagtcttttatctatatcataacaaag
ataacagagacaaaatcatcgtcagcttgtcaaaactccggctaatattt
ctaaattttgacttgaaagtgtctaataattctAGAGAGtatcacattct
aatttcgatattcttattacacaggctctcaactttggcaagctatgaga
gtgtcacattctaatttcgatattcttattacacaggctctcaactttgg
caagctattttttttcttttagtcttaaaaataattattggagtgacaaa
agggattcaaaagtatacacccAGTtgtaattctgcatttcagagttgaa
aatgttgataaaatatataaacttgtaaaaaaattcgaaaacaaTNttca
gagttgaaaatgttgataaaatatattacaaacttgtaaaaaaattcgaa
aataatttttttgtgcattaggagtaatgttcaaactctatcaatctttt
tacctaaataattcaaagaaataaaattatgacggaatattgtcggattt
ttcataccaattttaaaatacaggCAGCAACGAAGCTCACTTCAAAGAGA
CAagaaaagatagatgtccagtagTTTTATGTTCATGAtcatatcaaagt
ctcaacttttctagatcaaaagttatcgacgattttgtggtcaaaaattg
attgaaaacagggaatttcccctcaatctgcataatttatgcaaaatttc
agGGAGCTGGCCACGGCCTATAATGAATCTGGGTCACACCTTTTGTGTTT
AATTTAGAGGAGTTTTAAATCTCACATGTGACGTTAAATAGCTAATTAAT
CATCTGACGtcaaacagttttttttaaattttgacgtCACACAAATATTT
ACTGATAtttattttctcaaaacaaaaaaattcttcaacaacaaaacaat
caaGATCTAAATTTTATCGAAGAAATAAATTCTTCAACGCAAATCAGTAC
CGTACAACAGATGGGAAACACGTTACAAtcttcaaaatcttaaatttctt
aaaatctcGTAAACTAaaacactttttcaaaatggctgctTATCACAACG
AAGCCCTTCGTAGACAACGTGTTATTGATCGTAAAGTTGAAGCGTTGGCT
CGGATATCAATTCGTCAGGTTAGATTCCTTTTAGGCCTCAGAACAGTGta
cattacacccctgtctcagtgctccgaaagaagattttcaatttttggcc
tcAAAATTGTATAAATTACTCCCCTGTTTTAGTGCGACGATAAAAGGTTT
TCAATCATCCGTCAGGTTAGATTCCTTTTAAGCCTCAAAACAGTGTacat
tatacccctgtctcagtgacccgatAGAAAATTTTCGAGCAGCGGTGATA
AAAATTCTcattaaatcttcaaaaataaaatcaatcacTCCATTTCATAG
TCATAGTTAATCAATTTTAAGGCAGTTTTTCACAAACTATacataagaac
aaaaggcttgaTGGctaaaatgctaagaacaagtttaggaaataaaattt
tagacaaaaatactcacaaaatggtgaaaatatgcAGCATGTAAGAAGAT
TTTTAAGCTTCAAACGTAAAAAGTTTAAGAACTtcagaaagcttcaaaaa
ttttggatgttcttatgaaaaacaaaatataactttccaaatttcaattt
gaacgaggattgtatttttttcactgaagatgatttttttctcgGTCAAA
TTGCGGAAACGGGGCATCTCACCACGGATTCGTAACACTTAGAGGAAATA
TCATTTAAGATGTGTATTAAATGTTTTACTGATGTATAAATGATAAAATC
CAGACGAATAATTACCTTTCTATAATTCCCACAGGAAGAAGAGGAGAGAA
GGTTGAACGAAGAAATCCGAAGACAACAATTCGAAAAACTCGAACAAGAA
GAAAACAGACGTCTAGAACGTGAACTCCATCTTCAACAATGCGGTGGCAA
AATCAAGCCAACAGGTAATTTAGTAatctcgtccccgtgtatcccaggct
ttatttactttatttatTAACGCCAGAGAATATTCTGGTATAAGCTGATG
CCAACTTTACCCCCGTTCcaggttttatttattttattgatttacgccag
agaataccctggtgtagGCTGATGCAAAACTCTttcccgtgtattccagg
ctcgatttacgttactgattgacacCAAGGAATATTTTCGCGAAGGCTAA
TTTTAGCTCTCCCTCTCTTTTCCAAAGCAATGCGTTGAAAAATCTGACTA
ACTTTACAAATATGAGCGGCAATGCAATGGTTTTAATATCCAACAACAAA
TGAAATTACGTATTTCGTGCTCCAAAACCAaacaatgccagggtattatc
tggtgctatcagtaagcatcaacaAGCCGATAATACATCGGGGACGATGT
TGCTTGATAGTTTTAAATAcgtttctaaaataaaaattctatcgTACTGA
AGCTGTTCTATTCTTTATTGATTGCTAACAATACTAGCCCCATTATCCCC
ATTAATCATCCCAGACTATTTCATTTTTGTAGTCCAAGGGAGGGGGAGAT
CTACCACTCTCGATCATCTTGGATCTCTAGATGATAAATCTCAATGAAAA
TCAGTACATATCATAAAgatatttcttaaattcttttttcagttgtattg
aagtttttacaagatgctcacataattggttattcaaaacaatagagatg
acgcgttctttagaaaaatataataaaagtttttgtttgaatagttaacg
accaatccaatgacaaaaattcttgtaaatgttcaacttgacccTCTTTT
TTAGGCTACTCAAGTAAACAAACACAAGTGAAATTTCAAACCCAGTCCGA
TTTACGACACCAGTCGAAAATTTTACGAGATCATGGACTTGTTATGGGTC
ACGTTAATGGACAATTTTTCTCGTAAATATATTgacaacaaaaatattta
tcttattattttttgtaatgTTTTAGTGTGTGTGATTTTAATGTACAAAT
AATGATTTGACAAAAGAGAAATATATGATTTTAAGGTGATGATGTTATAA
TATGGGTTTTGTAAtataattaaagtctgtctcaaaataatttgctgCTG
AGataaaaatggctgtaacttttgatagaattcgaac Coding sequence (CDS) from alignment at sc0000099:300997..308383+ >TCONS_00009809 ID=TCONS_00009809|Name=TCONS_00009809|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0000099:300997..308383+ (Clytia hemisphaerica)
ATGCCAACTTGCACACACATCAATTATCACCAAGAGGCTCAACGTAAACA
AAGACAGATCGAAAGAAAAAATGCTGCTCTTGTCAGacttcaaaaagaaa
aaGAAGAAGAGGAGAGAAGGTTGAACGAAGAAATCCGAAGACAACAATTC
GAAAAACTCGAACAAGAAGAAAACAGACGTCTAGAACGTGAACTCCATCT
TCAACAATGCGGTGGCAAAATCAAGCCAACAGGCTACTCAAGTAAACAAA
CACAAGTGAAATTTCAAACCCAGTCCGATTTACGACACCAGTCGAAAATT
TTACGAGATCATGGACTTGTTATGGGTCACGTTAATGGACAATTTTTCTC
GTAAATGCCAACTTGCACACACATCAATTATCACCAAGAGGCTCAACGTA
AACAAAGACAGATCGAAAGAAAAAATGCTGCTCTTGTCAGacttcaaaaa
gaaaaaGAAGAAGAGGAGAGAAGGTTGAACGAAGAAATCCGAAGACAACA
ATTCGAAAAACTCGAACAAGAAGAAAACAGACGTCTAGAACGTGAACTCC
ATCTTCAACAATGCGGTGGCAAAATCAAGCCAACAGGCTACTCAAGTAAA
CAAACACAAGTGAAATTTCAAACCCAGTCCGATTTACGACACCAGTCGAA
AATTTTACGAGATCATGGACTTGTTATGGGTCACGTTAATGGACAATTTT
TCTCGTAAATGCCAACTTGCACACACATCAATTATCACCAAGAGGCTCAA
CGTAAACAAAGACAGATCGAAAGAAAAAATGCTGCTCTTGTCAGacttca
aaaagaaaaaGAAGAAGAGGAGAGAAGGTTGAACGAAGAAATCCGAAGAC
AACAATTCGAAAAACTCGAACAAGAAGAAAACAGACGTCTAGAACGTGAA
CTCCATCTTCAACAATGCGGTGGCAAAATCAAGCCAACAGGCTACTCAAG
TAAACAAACACAAGTGAAATTTCAAACCCAGTCCGATTTACGACACCAGT
CGAAAATTTTACGAGATCATGGACTTGTTATGGGTCACGTTAATGGACAA
TTTTTCTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009809-exon-sc0000099-1491911889:300997..301042 | TCONS_00009809-exon-sc0000099-1491911889:300997..301042 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1510915933:300997..301042 | TCONS_00009809-exon-sc0000099-1510915933:300997..301042 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1575043694:300997..301042 | TCONS_00009809-exon-sc0000099-1575043694:300997..301042 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1491911889:301269..301339 | TCONS_00009809-exon-sc0000099-1491911889:301269..301339 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1510915933:301269..301339 | TCONS_00009809-exon-sc0000099-1510915933:301269..301339 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1575043694:301269..301339 | TCONS_00009809-exon-sc0000099-1575043694:301269..301339 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1491911889:302237..302351 | TCONS_00009809-exon-sc0000099-1491911889:302237..302351 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1510915933:302237..302351 | TCONS_00009809-exon-sc0000099-1510915933:302237..302351 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1575043694:302237..302351 | TCONS_00009809-exon-sc0000099-1575043694:302237..302351 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1491911889:307081..307210 | TCONS_00009809-exon-sc0000099-1491911889:307081..307210 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1510915933:307081..307210 | TCONS_00009809-exon-sc0000099-1510915933:307081..307210 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1575043694:307081..307210 | TCONS_00009809-exon-sc0000099-1575043694:307081..307210 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1491911889:308051..308383 | TCONS_00009809-exon-sc0000099-1491911889:308051..308383 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1510915933:308051..308383 | TCONS_00009809-exon-sc0000099-1510915933:308051..308383 | Clytia hemisphaerica | exon |
| TCONS_00009809-exon-sc0000099-1575043694:308051..308383 | TCONS_00009809-exon-sc0000099-1575043694:308051..308383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:300997..308383 + |
Blast
The following BLAST results are available for this feature:
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