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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009810 ID=TCONS_00009810|Name=TCONS_00009810|organism=Clytia hemisphaerica|type=transcript|length=741bp
GTTACCGATTTGTGTTGATACTAAATTCTCTCTGTATTTGTCTCCTTTGT
AAAGAGAAGTAGAGTTACTTGTGAGTTTTTGTTGGTTAGAAAATTTACAG
AGAAAAGAAACATCTTTTTTTGTACTACAAACTTCTTATTGAAGAATTTC
ACAGAAAAAGAAGGATTCCGCCGAAAATGCCAACTTGCACACACATCAAT
TATCACCAAGAGGCTCAACGTAAACAAAGACAGATCGAAAGAAAAAATGC
TGCTCTTGTCAGacttcaaaaagaaaaaGAAGAAGAGGAGAGAAGGTTGA
ACGAAGAAATCCGAAGACAACAATTCGAAAAACTCGAACAAGAAGAAAAC
AGACGTCTAGAACGTGAACTCCATCTTCAACAATGCGGTGGCAAAATCAA
GCCAACAGGCTACTCAAGTAAACAAACACAAGTGAAATTTCAAACCCAGT
CCGATTTACGACACCAGTCGAAAATTTTACGAGATCATGGACTTGTTATG
GGTCACGTTAATGGACAATTTTTCTCGTAAATATATTgacaacaaaaata
tttatcttattattttttgtaatgTTTTAGTGTGTGTGATTTTAATGTAC
AAATAATGATTTGACAAAAGAGAAATATATGATTTTAAGGTGATGATGTT
ATAATATGGGTTTTGTAAtataattaaagtctgtctcaaaataatttgct
gCTGAGataaaaatggctgtaacttttgatagaattcgaac Run BLAST on NCBI transcript from alignment at sc0000099:301053..308383+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009810 ID=TCONS_00009810|Name=TCONS_00009810|organism=Clytia hemisphaerica|type=transcript|length=7331bp|location=Sequence derived from alignment at sc0000099:301053..308383+ (Clytia hemisphaerica)
GTTACCGATTTGTGTTGATACTAAATTCTCTCTGTATTTGTCTCCTTTGT
AAAGAGAAGTAGAGTTACTTGTGAGTTTTTGTTGGTTAGAAAATTTACAG
AGAAAAGAAACATCTTTTTTTGTACTACAAACTTCTTATTGAAGAATTTC
ACAGAAAAAGAAGGTTTTCTTGTATATTACATTTTGTCATTTGTATGTGA
AAAATTCTGTTTCAAGGAATAGAGAATTCTGTTTGTTGCCATCAATTTGT
ACAGATGAAAGTTTTTTGAACCATAAGGTAGCCTAAGGTAGTGATATTTT
GATATATTATATGaccatttttaacaatttttacaaTACTTATGAGTATT
CTTTCCACTGCCACACCCTTTTGAGTTTCGGTTGTTCTAATTTTCCGGCC
CTTTGAGCATTAAACtattcttatcctgttcttattttcacgttgTGTTA
CTTTAGTCTTTGCTCCCTGGATTTGCATTTTAAGTTAATTTGCTCAAGAT
TCCAGCACTAGGCTTATTAGGATTAttcatgtacacgtttttttataaga
gcatgaagccttcggatgttcttactttgagttttaagcctgaaaatgtt
cttaacatgtttttattttcacctctTCAtaaatttttgctcattttttc
ctaagaaatcgggtgtttagaacccgcaaagccttagaatattatataaa
tttttcttaatatttcggccatcgaaggcTTATATATATTGCTCTTATAA
TAAAACGTgaattgtttttatttggttGCATTTTCCAGGGTTCAAAGGGT
TGCCTGTAACTAAACAGGTCTTTCGATAAGCTATAAGTATACGTAACAAG
CCGTCGTTCTATTCAAACATAAGACTCCATTACCGGATCTCATATTTCGA
TGacttccaaaggatgtttccgATATTTTCCCCGGGCTAGTGGACGAAAA
GTAGAAGGTCGATACTGGATCAGTAGTGTAGACAAGAGGGGcgtaaaatt
tgtgtaggagaacagatttttatgacattacaattatctttttataccAT
TATAGAtgattacagtgtcataaaaatctgctctcctacacaaacttcgc
gcccctcctgtctataCTACTGGGGATAATAGCTCGTGTTTTACTGAAAG
ACTGgcaactttttttgactttcttaTGTTTAAGGATTCCGCCGAAAATG
CCAACTTGCACACACATCAATTATCACCAAGAGGCTCAACGTAAACAAAG
ACAGATCGAAAGAAAAAATGCTGCTCTTGTCAGacttcaaaaagaaaaag
taaggcTGATatacattacgtaatgttttctacggaaacacCTGGGCTTA
TGGAAGTAGTGGAAAATTTAAGCATGagaaaaattgtttacattttgccA
ATACTGGACaatccgtagaaaacattacatcatgaatacacgttttttag
aaTTAGAGGCACTACAAAAGCCATCACTTGCAAAGTAAATGGCTTGAAAC
gtcaaaacttaattttttagccACAGGACAGGGTAAATTTTCCTTTCGAA
AATACTATACAcgttttgagatttaagccaaaatcttttttccaatttcc
ttagaaatcgggtgttttagagtcccaaAAACCTTAAgacgttcttaact
tgttcttagcatttttgcGATCGAAGTCTTATACcgtttgtttttatata
aaaacctgtaaaagagaaaattatCTAGAGAAAAGTGTTTGTCAATTTCG
TACCCAGAGCTATTTATACCACTTGAATTTTTactgatacacgcttttta
taagaattaaccttaaatatgtattttccaaaaactaaaatgttaaaaaa
aataactaaaagtTTCATGCACTTGCGTACAATCATCAGATATGACTAAA
AATAgtgttgaaaagaaatttaggtaCAAGGAAAAATTCTGATTCATTAA
AAAGTGATTAAAACATGTGATGGAAGATTATTAAAAGAtcgttaaaagat
aaaaaagacaAAGGTAGTAAAACTGTAGAATTCTCAAGGGTCTGGTGGAA
CCTCTTTGAAGTTTTACGTAGAAATTAATTCAGATGGTTTATTTAATAGT
TTTTCCTTTGACAAAATAATGTGGTACTTTTCCGTAAGGCATAGATCACA
TAATTTGCTGCCATTTTTGTACGGTTGGGCGTGGTCGATAACTTTCCATT
TTAGAATAGCGCActgcgctgaatctaaaaatagattttatttttgacat
aatcattactctcgatgtgtttgtacgagttccaatcccatcaatctttg
cgttaatctcttttgcacgctAATTGGATCGTTTGACAAAAGATATATAA
CAGCTTgcacgtatctttaattgagccgcgttgaattgtgggattgcaac
tcgtacaaatgtcaaaaaaagtgaaaagtaataattatgacgtatgcgtt
gcggagcgTTCGATGGTCTTATTCTTAAGAATTTAccttataagaatatt
tatgatgagattggccaaaaaatagaaatatggtaagaatatcaccatca
tggagtTTGGCAacataacctaagaatgccatttttagagcattttacca
TTAAATTGCCATTCATCAATCAgcaaattttcacgaaaatgtCAAATTGA
GGTATGTATTGCATGCTAGATTTAGGTTGGGTTTGGTTCCAAATcgaaga
ataccgtaagaatatttcaggatgattttcatCGGAAAGTTAAGTGTGTA
GACGTAATACCTTACGTGGATATATTCTGGCGGGGATTAAAATTAGCGAA
TCCAAATTAAATCAtcgccaaaatttctaaattcggcaattcaccaaatt
aaatctcgccaaatttttcaaaatttccctttcaccaaattaaatcccat
cctcgccaaaattaaaagaaaatcatgtttttaatcaattctGAACTTCA
ACAAAACACCTtaataaaaaacacttttttttgtctttcaccaaattaaa
tccctgccaaaaatcgcattttggtcactcgccaaattaaatccacgcca
aaatttatccacttaaggtataatCGTGTGCGTTTCGTGAGCACTATCtg
aatcataaaaaagcgaATTTatggactgggttcgagtttgacTACTTGTT
GTTTAACAAGACAGGGACAAGATTGTAAAGactttttaaaagatttgagG
TAATTTTCTTTTCACGGACAACGTGATAAATCCTATGCAAAAGTATTCAA
AATCTGTATATGTGTaacttaaaaaaatacttttaataGACAATGGCTAG
CGGATTgctaaagttttaaaaaatcaggaaaaattgtgaacaactttttg
atatgtttttactcaatttgagggtgcttgAATTTGAATGTTCCCAAGCT
TGAAAACCTGCAGTTTTCttgtaatttgcgatttttacgtttttaggtCT
TTTAGGTAAAAttgtatatatatagtatgaaaaaataaaatgttttctcc
tgtcagaactacaaacaacaaagagtggccgaattctttttcctcttaga
gagacgatgttacaatGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtcctct
ctgggtccctctgtctttatcctggcttgggacaggctgactgtcattta
agacagtcaggcgacattaccccagcggcctgtacaagatgacagcaaac
tccaggtagactgacaggagaagaaaacaaaacatgaaTCAACAAAGGTG
TAAACACCTTAGACTCCTTTGGAGCCGACTGCACTATATATACGGGTATA
TTGTATATGATTTTCGGGggttcttcaaaatcaaaagagacctataccac
gtgatatAGCTCTTCAAACTAAAACTaatcatatcatgaatatataaacg
actggacatccatctcctttgtctttttgaagataacacagctagcttcg
ttgccgcctcgttaaaggcataaaatgaaacaatagattttgatgatata
ccacttgggaataccgtgctaacaacgtcaaaacttcgacaaaagtctct
gttgttctactcttctcaagtcttttatctatatcataacaaagataaca
gagacaaaatcatcgtcagcttgtcaaaactccggctaatatttctaaat
tttgacttgaaagtgtctaataattctAGAGAGtatcacattctaatttc
gatattcttattacacaggctctcaactttggcaagctatgagagtgtca
cattctaatttcgatattcttattacacaggctctcaactttggcaagct
attttttttcttttagtcttaaaaataattattggagtgacaaaagggat
tcaaaagtatacacccAGTtgtaattctgcatttcagagttgaaaatgtt
gataaaatatataaacttgtaaaaaaattcgaaaacaaTNttcagagttg
aaaatgttgataaaatatattacaaacttgtaaaaaaattcgaaaataat
ttttttgtgcattaggagtaatgttcaaactctatcaatctttttaccta
aataattcaaagaaataaaattatgacggaatattgtcggatttttcata
ccaattttaaaatacaggCAGCAACGAAGCTCACTTCAAAGAGACAagaa
aagatagatgtccagtagTTTTATGTTCATGAtcatatcaaagtctcaac
ttttctagatcaaaagttatcgacgattttgtggtcaaaaattgattgaa
aacagggaatttcccctcaatctgcataatttatgcaaaatttcagGGAG
CTGGCCACGGCCTATAATGAATCTGGGTCACACCTTTTGTGTTTAATTTA
GAGGAGTTTTAAATCTCACATGTGACGTTAAATAGCTAATTAATCATCTG
ACGtcaaacagttttttttaaattttgacgtCACACAAATATTTACTGAT
AtttattttctcaaaacaaaaaaattcttcaacaacaaaacaatcaaGAT
CTAAATTTTATCGAAGAAATAAATTCTTCAACGCAAATCAGTACCGTACA
ACAGATGGGAAACACGTTACAAtcttcaaaatcttaaatttcttaaaatc
tcGTAAACTAaaacactttttcaaaatggctgctTATCACAACGAAGCCC
TTCGTAGACAACGTGTTATTGATCGTAAAGTTGAAGCGTTGGCTCGGATA
TCAATTCGTCAGGTTAGATTCCTTTTAGGCCTCAGAACAGTGtacattac
acccctgtctcagtgctccgaaagaagattttcaatttttggcctcAAAA
TTGTATAAATTACTCCCCTGTTTTAGTGCGACGATAAAAGGTTTTCAATC
ATCCGTCAGGTTAGATTCCTTTTAAGCCTCAAAACAGTGTacattatacc
cctgtctcagtgacccgatAGAAAATTTTCGAGCAGCGGTGATAAAAATT
CTcattaaatcttcaaaaataaaatcaatcacTCCATTTCATAGTCATAG
TTAATCAATTTTAAGGCAGTTTTTCACAAACTATacataagaacaaaagg
cttgaTGGctaaaatgctaagaacaagtttaggaaataaaattttagaca
aaaatactcacaaaatggtgaaaatatgcAGCATGTAAGAAGATTTTTAA
GCTTCAAACGTAAAAAGTTTAAGAACTtcagaaagcttcaaaaattttgg
atgttcttatgaaaaacaaaatataactttccaaatttcaatttgaacga
ggattgtatttttttcactgaagatgatttttttctcgGTCAAATTGCGG
AAACGGGGCATCTCACCACGGATTCGTAACACTTAGAGGAAATATCATTT
AAGATGTGTATTAAATGTTTTACTGATGTATAAATGATAAAATCCAGACG
AATAATTACCTTTCTATAATTCCCACAGGAAGAAGAGGAGAGAAGGTTGA
ACGAAGAAATCCGAAGACAACAATTCGAAAAACTCGAACAAGAAGAAAAC
AGACGTCTAGAACGTGAACTCCATCTTCAACAATGCGGTGGCAAAATCAA
GCCAACAGGTAATTTAGTAatctcgtccccgtgtatcccaggctttattt
actttatttatTAACGCCAGAGAATATTCTGGTATAAGCTGATGCCAACT
TTACCCCCGTTCcaggttttatttattttattgatttacgccagagaata
ccctggtgtagGCTGATGCAAAACTCTttcccgtgtattccaggctcgat
ttacgttactgattgacacCAAGGAATATTTTCGCGAAGGCTAATTTTAG
CTCTCCCTCTCTTTTCCAAAGCAATGCGTTGAAAAATCTGACTAACTTTA
CAAATATGAGCGGCAATGCAATGGTTTTAATATCCAACAACAAATGAAAT
TACGTATTTCGTGCTCCAAAACCAaacaatgccagggtattatctggtgc
tatcagtaagcatcaacaAGCCGATAATACATCGGGGACGATGTTGCTTG
ATAGTTTTAAATAcgtttctaaaataaaaattctatcgTACTGAAGCTGT
TCTATTCTTTATTGATTGCTAACAATACTAGCCCCATTATCCCCATTAAT
CATCCCAGACTATTTCATTTTTGTAGTCCAAGGGAGGGGGAGATCTACCA
CTCTCGATCATCTTGGATCTCTAGATGATAAATCTCAATGAAAATCAGTA
CATATCATAAAgatatttcttaaattcttttttcagttgtattgaagttt
ttacaagatgctcacataattggttattcaaaacaatagagatgacgcgt
tctttagaaaaatataataaaagtttttgtttgaatagttaacgaccaat
ccaatgacaaaaattcttgtaaatgttcaacttgacccTCTTTTTTAGGC
TACTCAAGTAAACAAACACAAGTGAAATTTCAAACCCAGTCCGATTTACG
ACACCAGTCGAAAATTTTACGAGATCATGGACTTGTTATGGGTCACGTTA
ATGGACAATTTTTCTCGTAAATATATTgacaacaaaaatatttatcttat
tattttttgtaatgTTTTAGTGTGTGTGATTTTAATGTACAAATAATGAT
TTGACAAAAGAGAAATATATGATTTTAAGGTGATGATGTTATAATATGGG
TTTTGTAAtataattaaagtctgtctcaaaataatttgctgCTGAGataa
aaatggctgtaacttttgatagaattcgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009810-exon-sc0000099-1491911889:301053..301215 | TCONS_00009810-exon-sc0000099-1491911889:301053..301215 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1510915933:301053..301215 | TCONS_00009810-exon-sc0000099-1510915933:301053..301215 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1575043694:301053..301215 | TCONS_00009810-exon-sc0000099-1575043694:301053..301215 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1491911889:302237..302351 | TCONS_00009810-exon-sc0000099-1491911889:302237..302351 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1510915933:302237..302351 | TCONS_00009810-exon-sc0000099-1510915933:302237..302351 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1575043694:302237..302351 | TCONS_00009810-exon-sc0000099-1575043694:302237..302351 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1491911889:307081..307210 | TCONS_00009810-exon-sc0000099-1491911889:307081..307210 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1510915933:307081..307210 | TCONS_00009810-exon-sc0000099-1510915933:307081..307210 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1575043694:307081..307210 | TCONS_00009810-exon-sc0000099-1575043694:307081..307210 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1491911889:308051..308383 | TCONS_00009810-exon-sc0000099-1491911889:308051..308383 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1510915933:308051..308383 | TCONS_00009810-exon-sc0000099-1510915933:308051..308383 | Clytia hemisphaerica | exon |
| TCONS_00009810-exon-sc0000099-1575043694:308051..308383 | TCONS_00009810-exon-sc0000099-1575043694:308051..308383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:301053..308383 + |
Blast
The following BLAST results are available for this feature:
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