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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009819 ID=TCONS_00009819|Name=TCONS_00009819|organism=Clytia hemisphaerica|type=transcript|length=1656bp
AAACTTTCAAGCGAAAGGTCGTTATTTATTTTGCCGAAGTTCAAATCATT
TTATccgttattttttcttattctcaATTTTTCCGTTAATTTAAAGTTTT
CAGAATGCGTGAATGTATCTCCATCCATCTTGGCCAAGCTGGTGTCCAAA
TGGGAAATGCTTGTTGGGAATTGTACTGTTTGGAGCATGGAATCCAACCT
GATGGTCAAATGCCTTCAGACAAAACTATTGGAGGCGGTGACGATTCATT
TAACACCTTTTTCAGTGAAACCAGTTCTGGCAAACACGTCCCAAGAGCTC
TTTTTATTGATCTGGAACCCACCGTAGTTGATGAAGTCCGCAGTGGAACA
TACCGACGTCTTTTTCATCCGGACCAACTCATCAGCGCNATCGATGTCTT
GGTTGACCGAATCAGAAAAACAGCTGATAAATGTACTGGTCTTCAAGGTT
TCTTAGTCTTTCACTCTTTCGGTGGCGGAACTGGATCCGGATTCACTTCC
TTGTTGATGGAACGTCTTTCTGTCGAGTacggcaaaaaaacaaaactcga
ATTCGCCATTTACCCTGCTCCACAAGTTTCCACAGCAGTTGTCGAGCCTT
ATAATGCCATCTTAACGACACACACAACCTTGGAGCACACCGATTGTGCT
TTCATGGTTGACAATGAGGCCATCTACGATATCTGTCGTGCTAATTTGTC
TATTGACCGTCCGACGTACACCAATTTAAACCGTTTGATTGGCCAAATCG
TCTCCTCCATTACTGCTTCTCTCCGATTCGATGGTGCTTTGAATGTCGAT
TTAACTGAGTTCCAAACTAACTTGGTCCCATATCCACGTATTCATTTCCC
CTTGGCAACTTATGCTCCAGTCATCTCTGCTGAGAAAGCTTACCATGAAC
AACTCAGCGTTGTcgaaatcaccaactcctgttTCGAACCATCCAACCAA
ATGGTTAAATGTGATCCACGTCATGGTAAATATATGGCATGCTGTATGTT
GTACCGTGGTGATGTTGTTCCCAAGGATGTCAATTCTGCCATTGCTACCA
TCAAAACAAAACGAAGTATCCAATTCGTCGATTGGTGTCCAACTGGATTC
AAGGTTGGAATCAACTACCAACCACCTACTGTTGTACCAGGAGGTGATCT
TGCTAAAGTCCAAAGAGCTGTCTGCATGTTGTCCAATACAACTGCTATTG
CTGAAGCCTGGGCTCGACTTGATCATAAATTCGATTTGATGTACGCTAAA
CGTGCTTTTGTGCATTGGTATGTTGGAGAAGGTATGGAAGAAGGAGAATT
TTCAGAGGCTCGTGAAGATTTGGCTGCTTTGGAGAAAGATTACGAAGAAG
TTGGTTTGGATTCTGTAGACTCCGATGAAGAAGATGaggatgaatattaa
atttCGGACAAACTCAGCAAATTTCGGACATCCTGAACAAATTTCGATTA
CCTTGAACAAATTTCGGACAAATCATCGGACgaattttgtttatatatta
AATCTACTTGTTATCCAAGAATCtataaaattattaaatttattttacac
CAACTTCAGTAAATTAAGTTTATTCAAATTGCactgcttaaaaaagtctt
cattataattttaattgtaaattcaacaaaataatttatctaTGCACGTA
TAAAAA Run BLAST on NCBI transcript from alignment at sc0000099:435957..439265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009819 ID=TCONS_00009819|Name=TCONS_00009819|organism=Clytia hemisphaerica|type=transcript|length=3309bp|location=Sequence derived from alignment at sc0000099:435957..439265+ (Clytia hemisphaerica)
AAACTTTCAAGCGAAAGGTCGTTATTTATTTTGCCGAAGTTCAAATCATT
TTATccgttattttttcttattctcaATTTTTCCGTTAATTTAAAGTTTT
CAGAATGGTAAGtttgtttattgtttttatatttttaccatATTTCTAAA
TCACAATAACAAATATCATCCTTAAAGGTCAAATGAATTTCAATGTGGGT
ACCCCTCAAATTTCTTTGCTCCCATTTGCGccatttgattttcaaaatcc
aCCTTTACGGTTCTTCCGCCAGGCCTGATGAATCTTAACCTTTTACGGAG
CAAAACTCCAGCGTGACAGAAAAGAGCTTGAAATTGTATCTTTAGTAGGT
GGCAACTGCAACCTTTTCAAAATATAGGTCTTAAAGTTACTCAAACTATA
GCGTATCTGAGACCGAAAAACAGCTTGTTATTCCTTTAGAATAATGGAAT
GGAATGTTTCTATTTATATTACACTTAATATTTTAGCGTGAATGTATCTC
CATCCATCTTGGCCAAGCTGGTGTCCAAATGGGAAATGCTTGTTGGGAAT
TGTACTGTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGAC
AAAACTATTGGAGGCGGTGACGATTCATTTAACACCTTTTTCAGTGAAAC
CAGTTCTGGCAAACACGTCCCAAGAGCTCTTTTTATTGATCTGGAACCCA
CCGTAGTTGGTAAGCAGTTTGTCTTGATTTGTTTTTAGAGTGGGTTAATG
TGAACATACACTCAACATATCTTAGCAGATACAAAAGAGGCTACATGTAG
CTTTTAATAAAATTCGAATTAAAAGTGGTTTGTGCTGGATAAAAAGATAA
TCAGGATTGGAATATtatgaaatagaaaaaattcaaaaaagtttggaaag
tgaagatgaaaaatgaagaaggaaataataaattttttgtaaaagtgcAC
TACGTTTGTTTACCTTTTCTGTTGCTACGTGTTACTATGATGAAGCCATC
TTGAAAATAAGATCAATGGATATATTGAAATTGATTTATCCTGAATAAGC
ATTCTTGAatcgaatttttaaatttctttttcataaaatgtttttttcat
tgaaaaaaaatgtggCTCAGACTCTTTTTTCCTAAACCTCTGGTGGAGTA
CACATCCCTTCACAAAGTAATTTCAAAGTGAATCAATAATAaagctttta
ttgaaaaaatgttttatcttTACCAAATCTGTGACATTTACCCAATAAAT
CACCATACATATAGATGGGAAATATTGGATTCATCAAACATGTTTCTGCA
TGTTATGTTTGAAGTAAATTATCCAGTCTTgcaattttaagatattaaga
AGATATTCAAGCTGAAAATATAATcctaaattcaaatttcttcTTCTAGA
TGAAGTCCGCAGTGGAACATACCGACGTCTTTTTCATCCGGACCAACTCA
TCAGCGCNATCGATGTCTTGGTTGACCGAATCAGAAAAACAGCTGATAAA
TGTACTGGTCTTCAAGGTTTCTTAGTCTTTCACTCTTTCGGTGGCGGAAC
TGGATCCGGATTCACTTCCTTGTTGATGGAACGTCTTTCTGTCGAGTacg
gcaaaaaaacaaaactcgaATTCGCCATTTACCCTGCTCCACAAGTTTCC
ACAGCAGTTGTCGAGCCTTATAATGCCATCTTAACGACACACACAACCTT
GGAGCACACCGATTGTGCTTTCATGGTTGACAATGAGGCCATCTACGATA
TCTGTCGTGCTAATTTGTCTATTGACCGTCCGACGTACACCAATTTAAAC
CGTTTGATTGGCCAAATCGTCTCCTCCATTACTGCTTCTCTCCGATTCGA
TGGTGCTTTGAATGTCGATTTAACTGAGTTCCAAACTAACTTGGTCCCAT
ATCCACGTATTCATTTCCCCTTGGCAACTTATGCTCCAGTCATCTCTGCT
GAGAAAGCTTACCATGAACAACTCAGCGTTGTcgaaatcaccaactcctg
ttTCGAACCATCCAACCAAATGGTTAAATGTGATCCACGTCATGGTAAAT
ATATGGCATGCTGTATGTTGTACCGTGGTGATGTTGTTCCCAAGGATGTC
AATTCTGCCATTGCTACCATCAAAACAAAACGAAGTATCCAATTCGTCGA
TTGGTGTCCAACTGGATTCAAGGTTGGAATCAACTACCAACCACCTACTG
TTGTACCAGGAGGTGATCTTGCTAAAGTCCAAAGAGCTGTCTGCATGTTG
TCCAATACAACTGCTATTGCTGAAGCCTGGGCTCGACTTGATCATAAATT
CGATTTGATGTACGCTAAACGTGCTTTTGTGCATTGGTATGTTGGAGAAG
GTTAGACTTTTTCTCTCAAATCAACAAAATGCTTAGCTTTCGTAAGGATC
TATAACTTTAGTCATCATTGGTAGCTTGAAGTAAATACAGTCGCTCccat
gttgtcttctgaccagccaccagaaacGTTGGAAAACCAATGGATCCGGC
GACACTAGAATTCACAACCATGCCATTTAATTTAGATCCTACCTCCATGA
TTCTAGGAGATTTGCCCCAAGAAGTTTGCCCCCGTCATTATCTCAGACTG
CACGAATTAAGATCTTGAATCTTCAATCTTATTGttacactgggcgaaat
aagtgATTTCCAACCCTGGAAATATcttggaaatatgatatttccatata
cattagtggaaatatgacttttctatactTCCAAAGTTTAGGAAATaaca
tatttcatgatatttcaaTGAGTTTAATGTATATGGAAATATTACacttt
caagatatttccaggattggaaatctcttattttgcCCAGTGTTATTGCA
ATTATTCTTGTCATTAATTCTTCTGTGGTCTTTTAATCAAAGGATTctgt
ttaaaatatatttttcgatattttctgTTTTAAGGTATGGAAGAAGGAGA
ATTTTCAGAGGCTCGTGAAGATTTGGCTGCTTTGGAGAAAGATTACGAAG
AAGTTGGTTTGGATTCTGTAGACTCCGATGAAGAAGATGaggatgaatat
taaatttCGGACAAACTCAGCAAATTTCGGACATCCTGAACAAATTTCGA
TTACCTTGAACAAATTTCGGACAAATCATCGGACgaattttgtttatata
ttaAATCTACTTGTTATCCAAGAATCtataaaattattaaatttatttta
cacCAACTTCAGTAAATTAAGTTTATTCAAATTGCactgcttaaaaaagt
cttcattataattttaattgtaaattcaacaaaataatttatctaTGCAC
GTATAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009819-exon-sc0000099-1491911889:435957..436063 | TCONS_00009819-exon-sc0000099-1491911889:435957..436063 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1510915933:435957..436063 | TCONS_00009819-exon-sc0000099-1510915933:435957..436063 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1575043694:435957..436063 | TCONS_00009819-exon-sc0000099-1575043694:435957..436063 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1491911889:436443..436665 | TCONS_00009819-exon-sc0000099-1491911889:436443..436665 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1510915933:436443..436665 | TCONS_00009819-exon-sc0000099-1510915933:436443..436665 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1575043694:436443..436665 | TCONS_00009819-exon-sc0000099-1575043694:436443..436665 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1491911889:437356..438306 | TCONS_00009819-exon-sc0000099-1491911889:437356..438306 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1510915933:437356..438306 | TCONS_00009819-exon-sc0000099-1510915933:437356..438306 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1575043694:437356..438306 | TCONS_00009819-exon-sc0000099-1575043694:437356..438306 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1491911889:438891..439265 | TCONS_00009819-exon-sc0000099-1491911889:438891..439265 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1510915933:438891..439265 | TCONS_00009819-exon-sc0000099-1510915933:438891..439265 | Clytia hemisphaerica | exon |
| TCONS_00009819-exon-sc0000099-1575043694:438891..439265 | TCONS_00009819-exon-sc0000099-1575043694:438891..439265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:435957..439265 + |
Blast
BLAST of TCONS_00009819 vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3) HSP 1 Score: 787.334 bits (2032), Expect = 0.000e+0 Identity = 382/432 (88.43%), Postives = 405/432 (93.75%), Query Frame = 3
Query: 105 MRECISIHLGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETSSGKHVPRALFIDLEPTVVDEVRSGTYRRLFHPDQLISA-------------------IDVLVDRIRKTADKCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVEYGKKTKLEFAIYPAPQVSTAVVEPYNAILTTHTTLEHTDCAFMVDNEAIYDICRANLSIDRPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVVEITNSCFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 1343
MRECISIH+GQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET +GKHVPRA+F+DLEPTVVDEVR+GTYR+LFHP+QLI+ +D+++DRIRK AD CTGLQGFL+FHSFGGGTGSGF SLLMERLSV+YGKK+KLEFAIYPAPQVSTAVVEPYN+ILTTHTTLEH+DCAFMVDNEAIYDICR NL I+RPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSV EITN+CFEP+NQMVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
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