TCONS_00009840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009840
Unique NameTCONS_00009840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009840 ID=TCONS_00009840|Name=TCONS_00009840|organism=Clytia hemisphaerica|type=transcript|length=687bp
CCAACATTCCCACACAAACACACAACCTACCAAACATTTGCAACAAAGAC
AAAGACCTTACTCTACTACCAACCATCAAACCTACACCACCACCCACCTT
TCGTTAAACAAGATCAAAACATTTattcatttgtataaaaacttaCAACA
ATGGATTCATTGATTCAGGAGTTCAACAAAACACGACGGGGTAGCCAGAA
GCCCGCCCTCGATGTGAACGAAACGCAAACATTAAACAAGAGTATAGCAA
GTGTTGCTAACCTTACCAGTGCTGTTAACGCCAGAATACTGAATTTTAAT
GTTGAGCAAAGCTCTTCTCACTCATTTGATAATACCCAAAACGCATCGAA
CGTAGAAGGCATCAACCCAGTAAATTTGGAAAGtgaaCCTATCTCGGTAT
CATTGGCTCAGCCCAATTTTAAACCatttattaaaagaattttaCTAGCT
ATGCTAGTGTTATTTGTTTCTTGCCTGGTGATATACCTAATGAAATACGA
TTGCATCAACAGGATGATAGGGTCCCAGTCTTCAGGTGAAGATGAAATTC
CAAAGCCAGACAACTGGTTGAATCATTTCAGTCATAAAACCTGTGATTTC
GCAAAACATTTTGGcttGGATTGTTTTTGGGCCCCAGAATCACCAGCTCC
AGAACCAGATGATAGCTGGTCCACATTTTTCAACCAG
Run BLAST on NCBI

protein sequence of TCONS_00009840-protein

>TCONS_00009840-protein ID=TCONS_00009840-protein|Name=TCONS_00009840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MDSLIQEFNKTRRGSQKPALDVNETQTLNKSIASVANLTSAVNARILNFN
VEQSSSHSFDNTQNASNVEGINPVNLESEPISVSLAQPNFKPFIKRILLA
MLVLFVSCLVIYLMKYDCINRMIGSQSSGEDEIPKPDNWLNHFSHKTCDF
AKHFGLDCFWAPESPAPEPDDSWSTFFNQ
Run BLAST on NCBI

transcript from alignment at sc0000099:201672..206631-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009840 ID=TCONS_00009840|Name=TCONS_00009840|organism=Clytia hemisphaerica|type=transcript|length=4960bp|location=Sequence derived from alignment at sc0000099:201672..206631- (Clytia hemisphaerica)
CCAACATTCCCACACAAACACACAACCTACCAAACATTTGCAACAAAGAC
AAAGACCTTACTCTACTACCAACCATCAAACCTACACCACCACCCACCTT
TCGTTAAACAAGATCAAAACATTTATTCATTTGTATAAAAACTTACAACA
ATGGATTCATTGATTCAGGAGGTAAATATTAAGCAAACATTCAATAGGTA
AAAGTTGGTTATTGATTCGACGAGGCAAAAGCCGAGTTGACATCACCGAG
GGTTAATAAATCCAATAACCAACGAAAATCTATTGAATATAATCTATACC
TAGAGGCAAAAACAAACTTTTTTTCTTTATGCTCGCTGCTATAGAAGAGA
TATTTTCCGTTGGATATCTAAAAATATTGGACAGTGCGTTTTGCTTCAAG
GTGGATGATAACAGGAATTATTCAATGGTTTTTATTGCCTACATGTATAC
AATAATACATCTTAAACTTTACTGCCTTATTTATGACCCACTGAGAATGA
GCATTCCATCCAGTCATCGTGGATAACGTGGAAGGGTTAATGAATGTCAA
TCCGGGGGGGGGCACTCATATGGTCTGACCCACGGCATGTGTGCCGCCCT
TAATGGTAGGTTTTCGAGACCCTCGAAATACATTGTAAGGGTGTACTTTT
GATAGAGCGCACTACAAGAGTCTTCTTTTAGCTGGGTGCACTGTAAGGAT
TTGTTTGGATACTACTGAATTGCAAGTCTGATAGTAAAAATCTAGTGTAG
TGTACCGTAAGTTTTGACTCGCACCCACTTCGATTTGTTTTACACATTGT
GTCGACATCTCTGGCTCACTTTCAGGTGGCTTCGCCAAAATAAGATCTGA
AATCAAACTACACCGTAAGGGTCAGAAACGTTCGGTAAAATGCACTGTAA
AGGTACCTTTTCACTACTCAAGAGCTGCATGAGCTGCATTATAAGGGTCC
AATTTTGAAAGCCATTTTTTGGCGACACATGCCATCGTTAAGAAATCGAG
TGCCCCTCCATCCCGGATGTCAGTTGGGTTTACCGGGGGTAACACATCTT
GGGCATGTTCATTAAATTGCAAACCTGTGGTCGTAAAGAAGGGAACGCGA
ATTTTTCGCACTTACTGTCAGCAATAACAAACAGGTTATGAGGTATTTAT
GAAAAATACCTTGTAAAGAATCTGAGATGTAAAGAATATATGATTAGTCT
TATTCTCTCTTTTAGTTCAACAAAACACGACGGGGTAGCCAGAAGCCCGC
CCTCGATGTGAACGAAACGCAAACATTAAACAAGAGTATAGCAAGTGTTG
CTAACCTTACCAGTGCTGTTAACGCCAGAATACTGAATTTTAATGTTGAG
CAAAGCTCTTCTCACTCATTTGATAATACCCAAAACGCATCGAACGTAGA
AGGCATCAACCCAGTAAATTTGGAAAGGTAAAAAATTCTATATGTTTCAT
TTCTGACTTACAGTTCTTTAGGGTGGTAATTTTCCATACTGCTTGCTTAG
TGAAGACTCTTAGCCATTAATCTGTCCTCTAAGTTTAGCGCTTTCTTGCC
AGGAGAAGGGTCAATCAATGAAATCATCGAGAAATTCAGACTTCCCTGTA
GCTGGGAAAAATCGCAAACAAAGCGCTTGATTATTAAGCCTTCAAACACT
ATAAATTGATTTCTAAGAATAGATATTGCCTAGAGTTTAAATTTGTTTTT
TATCTTTTCTTTTTCAGTGAACCTATCTCGGTATCATTGGCTCAGCCCAA
TTTTAAACCATTTATTAAAAGAATTTTACTAGCTATGCTAGTGTTATTTG
TTTCTTGCCTGGTGATATACCTAATGAAATACGATTGCATCAACAGGATG
ATAGGGTAAGAGAACGGTTATTAATTTTGGAAATTTTTCAGATCCCCCTT
TTTTATCATGATCTCCCCCGTTTATTTTCAATTGTAAAATATGGCTCTAA
ATAGCCTGTTTTTACCTTATTTTGGGGTATTAGAGGTACAATTTCAGAGT
CTCCTTCCATTTAACCCACCCCCCCTCGTTTATTAGATTATGAAAATACC
TTCAACAATCGCAATCTGAATTGCCCTAAATCGTCTGTTTAATTACCTAA
TTTTGGGGTTTTTAGAGGTACAATTTCGGACCCACTCCCTCCTTTCTATT
TAACCCACCGTTTATTAGATTTTGAAAACATTTCAGACCTCGCCCCTACT
ATTATGCATCTTAGAAGGAGTCATTTAAAAGATAAATAAATCATCTATCG
TTGTATTTCCCTGAGGGGGTGCTAGAGTTGGAGAATTTCGGGTATATTAT
AATGCCATCTTTAGAGAGACTGGTTAGAAAAATAAAAGTGACCCTCAGAG
AGCTGGTTTTTGAAAAGTTTTTTAAGCCTTACAAAGATTTTTTTTACTTT
TTATGGTTTTCGTATTCTTAAAAGGACTCAAAAGTGACACTAGAAGGTCA
AAAACTGACTGTTAATGTTACCCCATGTTGAATTCATAACAATGAATTTC
AAAAATCGAAGTGATGAGATGTTTCTATGACACACCTGGTAGATTTTGAA
AAGAGCTTTCCAACGAAACCAAACCCCGGAGGGGTTACTTAGCCAAAATG
GGTGCCGGGTATTAACGAGCTATAAGGGTCCCTTTTTCACACCCTCGAAA
GTCTATCAAAGGGGTACAAAACCCATTAAAAAGAAAATTGAGTCTCTATA
AGGGTCGAAAATTCTCAAAGGGTTGTAATTTTCCAAAATTTGGACAAAAA
TCGAGTGAAAATCGACATTAATTTTGAGAAAGGTCTCTCTAAGGGTCCCA
AAAACGCCAGATTTTCCTCTCTCTTAGGGACGATTTTCGATTTTTGGCTC
GGACATACCCTTCACCTTGCAAAAATAGTACCCCCTCCCCAAAATTGACC
CATTTTATTTTAGCCCCAGCCCACAGTACTGAAGGAATAAAGTTTCACTG
TTTCTTTTTTCTATCAGTTTCTATCGAAGTATTGATTCTGATACCCGGCC
CGCACATACCGTCAGTCCACAAACCCAGTGCCCCCCCCGGGTTCTGATAT
CAATAATAGCTGTCAAGAGCCAGGAGCTTGGCAAGCGTATATAGAAGACA
ATTACAACTGGATGATCGAACAAATCCAGGAACTCCTTAAGGGATTTTGG
TAATATTTTTTATCTGATTTCATCTATAACCTTTTCTTTAAAATAAGCAG
TTTTATTGATTTGTACTGAAAATTTCTGATTTTTCAATTGCGCTGGTGTT
TAAGTTAACATTCAAAAATCATCCATTCAAGGGCTAGGTCAAGCTTTAAT
ACACTTTTTTTTCTAAGCATAACGTTCATAAGCATACTTAGGTTCAAACT
CGGTAAAAATATAATGCAAAGTGTATCTCCATCTGAAACAAAAAGACATG
TGCAGCTTTTCTAAAACGCTGACTTTTTAGGGTTACTTTTAAAGCTGTTT
GAGCTTTCTTAAAAACCAAAGATTTTCGTCTGCAGCACCAAATTACAAAA
AAACTGTCACTTTTTGAACCGAACCAATTCTGACGAGCTATGGCCCAGCG
TGGAAATGGTGCACAGTACGCCGAATATATTGACAGTAATAACTTTTGGC
GTATTGGCGTAAGGAGAGAATATAAAGTAAGGTATTGACGTAAGTCAAAG
CTTTTCAAGGCGAGAGGAGCACCGCTATACTAACGCTCGTTTTCCTTACG
TCAGGTTTAAGCGCATCCACCTTGCATCCACCTTGCTCTCCGCCTCTCCC
TTGACCGTCATATAACGACGTAGAGTGTAAATAGAATAAAGCTTATAAGA
TCAAATTTCCCAGGGCTTTTGGGGGCTTTGCCCCCCCCCCCCCCCCCCCG
ATCCCCCATCACGGCTACCAGTTTGAAGCGCTTACAGCGCACCCCAAAAC
CCCTTGCAATTTTACCCATGCGAATTTTTTTGGCGTATACCTCAGTTTAA
ATAAGTAACAATTCAGCGTGTACTTTGCATCGTTTCCACACTGGCATAAG
GCCTGTTAACAGAAAACTGTTAACAGAGACAGACACCCCTGCCTCACAGC
CCCGGTTGAATTTTTTCCAACAGCGGGGATAAAGGATCTCACCGGGTTTG
TGTACAGAGTTTCGGCAAATTGCCCTTTTCATAATAAAGATGTTGTATTT
ACTCCCCCCCCAAAAAAAAAAAAAAATTTAAAATTAGACTATTGTTTGAC
ATAACGGAGCAGAGCCCTTTTTCAGGAAAAAATGTCTTCTGACACTGTCA
TTTTTTCAAAAGCTGATTGGATGTGAGTGATGTATTGGGTAGAATAGCAC
AGAAAAGTCACGTAAATCAACCGGAAAAATAAATTTTTGACGGAAATTTG
ATTTAGCGGGGATTCAGGTAAATCTGCAAAGTCGGCCAAATTTTCTTTCC
GTCAGAATTATTTTCTTTTGATAAAGTTTTAATGTTTTTAAAGTTTTTTT
ATCCGATTTTGTTATAGGTCCCAGTCTTCAGGTGAAGATGAAATTCCAAA
GCCAGACAACTGGTTGAATCATTTCAGTCATAAAACCTGTGATTTCGCAA
AACATTTTGGGTAAGAATCATTGATATAATAATAAAAACTCTCTATTCCT
AATATAATATTGAATTTTTAATAAAGACAACTTTGGAGAGCTACAAATTT
CAAGTTCTAAATTCAAGAAGTGAACCCTCGTTAATTCGAACTTCTATTAT
TCAAATCTTTCTATAATAGCTCTCGTCAAGAAGAAAATCTCATAAAATAC
GATCTATAATTCAAATCTTTCTATTAATTCAAACAACATAGCAGATTTCC
CATTCGAGCGCGAATTTATGAGAGCCGACTGTAATCTGAAATATTCTATC
CTGTTCAGTAATTTTTTTTGTACTTTTTAATTTTTAGCTTGGATTGTTTT
TGGGCCCCAGAATCACCAGCTCCAGAACCAGATGATAGCTGGTCCACATT
TTTCAACCAG

Coding sequence (CDS) from alignment at sc0000099:201672..206631-

>TCONS_00009840 ID=TCONS_00009840|Name=TCONS_00009840|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0000099:201672..206631- (Clytia hemisphaerica)
ATGGATTCATTGATTCAGGAGTTCAACAAAACACGACGGGGTAGCCAGAA
GCCCGCCCTCGATGTGAACGAAACGCAAACATTAAACAAGAGTATAGCAA
GTGTTGCTAACCTTACCAGTGCTGTTAACGCCAGAATACTGAATTTTAAT
GTTGAGCAAAGCTCTTCTCACTCATTTGATAATACCCAAAACGCATCGAA
CGTAGAAGGCATCAACCCAGTAAATTTGGAAAGTGAACCTATCTCGGTAT
CATTGGCTCAGCCCAATTTTAAACCATTTATTAAAAGAATTTTACTAGCT
ATGCTAGTGTTATTTGTTTCTTGCCTGGTGATATACCTAATGAAATACGA
TTGCATCAACAGGATGATAGGGTCCCAGTCTTCAGGTGAAGATGAAATTC
CAAAGCCAGACAACTGGTTGAATCATTTCAGTCATAAAACCTGTGATTTC
GCAAAACATTTTGGCTTGGATTGTTTTTGGGCCCCAGAATCACCAGCTCC
AGAACCAGATGATAGCTGGTCCACATTTTTCAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005504XLOC_005504Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009840-proteinTCONS_00009840-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009840-exon-sc0000099-1575043694:206461..206631TCONS_00009840-exon-sc0000099-1575043694:206461..206631Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1575043694:205205..205416TCONS_00009840-exon-sc0000099-1575043694:205205..205416Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1575043694:204777..204914TCONS_00009840-exon-sc0000099-1575043694:204777..204914Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1575043694:202072..202164TCONS_00009840-exon-sc0000099-1575043694:202072..202164Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1575043694:201672..201744TCONS_00009840-exon-sc0000099-1575043694:201672..201744Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1510915933:206461..206631TCONS_00009840-exon-sc0000099-1510915933:206461..206631Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1510915933:205205..205416TCONS_00009840-exon-sc0000099-1510915933:205205..205416Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1510915933:204777..204914TCONS_00009840-exon-sc0000099-1510915933:204777..204914Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1510915933:202072..202164TCONS_00009840-exon-sc0000099-1510915933:202072..202164Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1510915933:201672..201744TCONS_00009840-exon-sc0000099-1510915933:201672..201744Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1491911889:206461..206631TCONS_00009840-exon-sc0000099-1491911889:206461..206631Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1491911889:205205..205416TCONS_00009840-exon-sc0000099-1491911889:205205..205416Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1491911889:204777..204914TCONS_00009840-exon-sc0000099-1491911889:204777..204914Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1491911889:202072..202164TCONS_00009840-exon-sc0000099-1491911889:202072..202164Clytia hemisphaericaexon
TCONS_00009840-exon-sc0000099-1491911889:201672..201744TCONS_00009840-exon-sc0000099-1491911889:201672..201744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:201672..206631 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0742212	0.0723774	0	0	0	0	0.0954231	0.0893339	0	0.0774718	0	0	0.0493622	0	0.0842905	0	0	0.0571087	0	0	0.0717613	0	0	0.154738	1.03594	1.42239	0	0.108614	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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