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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009846 ID=TCONS_00009846|Name=TCONS_00009846|organism=Clytia hemisphaerica|type=transcript|length=1779bp
aaaaCGTCATGGGAAAATGAGtgatataaaaaatgtttaagaGAATTCCG
CTGGCAGATTATAAAGATTTGTTACTGGTTTTGAAAAGAAGATCTTCTAG
CGTAAGACGTTTGTTTTGAATCTGCAAACCTATACACCAGGATAATTTAA
AAAAGacATTTTATGAAAATGAAGTCTACCATTTTGGTTTTGTTGGTTGT
TGTGCTCATGGCAACCTTCCATACGAATGAAGCCTTTGGACCTTCTGGTC
GACCTTCTGGTAGAGTGAGTAGCGGCAAAGGAGTCGACAGAGCTCGTAGA
AATGCTATGGAAAACATAATGGCATCTAATGACAAGATTCTGGAAAGATT
TGCTCAAGCTTTGaaacgaagaaaaagaaagtccGTTGACAATGCTGAAG
AAATCTAAAGCCGGTTTACGATTCGCTaacattcttattttttttactac
aaattaatttttattctGAAAATTCTGCAATTATGTATTTTTTATTAAAG
TCCATTCACTGTTAGCTGTTAGAAACCACTCCCAAGGGGATTAttagttg
ttttttataagaacacctgaaatttttgaaattttccgatgttctaactt
tttgattttaagcctaggaatattcttaacatattcttattttcaccatt
ttttgagcttttttgaccattttcctaataaACTAGGTAGAGTGTAAACc
cttaaaatcttcttaacttgttcttaatattttggccatcgaaatttttc
ttaaatttttaatattttggccatcgttCTTAAACAGGTTGTTCATGAAC
AAAAAAGTTCTCTAATTACGCTGCTGACATATTGTTTCCATGATAGGAAA
AAGTGCAGATTTAAAGTGAATGGACTCAATTTCTATGTATGTCATTCACG
AGAAACGGTTTACCAAATGTTGTTTTAATACCTTTCTTAAACGAATGACT
TTTTTCTGATGGAAGATAatcgcaataaattcatcatttgCATCctcatt
ttaaaaaatctttaaaattttttgctttaaatataTCCATTATAGCAAGC
AGAACAAATATCAGTGACATTTCGACGATCATTTTTTagtacaaatattt
tcttatattACATAATAGCATAAACTGTAGGTAAAATGAATTCATTTATC
TTTAATCCTCAAAAAGTCAGGTTTTGCGGGTATGAGTTGGTATCCCAGAT
CTTTACCCCCTTTGCTTGAATTAGTTCTGTTTTTATTCCGTATAGATTTT
GTATACATAAAAAACTCTTTGATTGAATAATATGTAATACGCAATTGGAA
ACCCGTGTATTTAACCCCACTGTCCTTTTCTAAAAGAATTCCAATTGTAT
CTGGCAATTATGAGCCCTAAAGCAGATCCTAGAAAGTGTAAAGCAAGAAT
TTGACTATCCATTGGTTCAAGAAAGAACAGTAGAATCGGTTATATCTCAG
GAATACTCGTCATTTAAGTTAGTACCTTGAACTGAAATTGGGTAAGGATC
ATccaatttattaatttttgtaatAAGTGCTGTTCAGTTTCCTAAAAGAA
CCCCATTTTTGGATCAATAAAGCCCTCGTGTGTACAATTTGAGctcaaaa
atttaacttgatGAAGGTTGCTCAAAACCGGGTAATTTTGGAAATGTTTG
AttttagatccctcaaaatcccgcCATATCCCGCGAAAGATCCTTCAAAA
TCGGAATCGGAATAACTTCCGATTAGGAAAGAGTAgagctctgaaatttt
cactggATGTCCGTTTTATTATTCTGCAT Run BLAST on NCBI transcript from alignment at sc0000099:317746..320827- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009846 ID=TCONS_00009846|Name=TCONS_00009846|organism=Clytia hemisphaerica|type=transcript|length=3082bp|location=Sequence derived from alignment at sc0000099:317746..320827- (Clytia hemisphaerica)
AAAACGTCATGGGAAAATGAGTGATATAAAAAATGTTTAAGAGAATTCCG
CTGGCAGATTATAAAGATTTGTTACTGGTTTTGAAAAGAAGATCTTCTAG
CGTAAGACGTTTGTTTTGAATCTGCAAACCTATACACCAGGATAATTTAA
AAAAGGTATCTTTTATGAGATTATATTATTTTTTTGGAAATATTTAGTCA
AGAATTGTCGAGGTAATAAGGGGTCACGCAAATATTGAATTTTCTCACCA
CTAATGTCATTCATCAGTGCCGTAGGAAGCATTTTCATATTGGGGGAGCT
GAAGTTTAGTGACACCGCGAGGGCCAACCATGGTTTGGCCTGAGGGGGGA
AATTTTGAAAATTGAGCTCTAGATTGCTTAAAAATACACTCAAAACATCC
ACATAAAAGACAATTATGACAAATTAAAAAAGAAAAACTTTGCATTTTGC
AAAATAAACATTTTTGAAAAAATTATTGGGGGGGGGCATAGCCCCCCTTG
CCCCCCCAGTTGCTACGGCACTGTTCATATCCTAACCTGTTAGAAAAATT
AGAATTCAATCATCGCCGAAAATCGATATTTTGGATTGATTTTCTTAGCG
TCACTGCCTCTGAGCCCCCTCCCCCACCCCCTCGCGTCATTGTGACGTTA
GTGGCGGGAAACATCGATATGTGAGTGGCGCCTAACAACAAAATTTGAAC
TACACTATTTTTCATTCTACAAAAATAATAGTTTGATAAATGTTATATTT
CAAATGAACTTTAAGACGTTTATTTTGAGTCTGGCAGGAAGTATTAAAAG
TATGATCAAATCCGTCTCAAAAGTATATGGACACTCACATTTTAGCGTAC
CTTAAGGAAAGAATTATTGTAGGAAGAATTTTTGCGGATCATAATTTTGC
GGTTCACGGCTAAAAATTCGGAAATTTTGAGAAATTAAATTTCGCGGTTG
AGAGAATTTTCTACAATAGAATTGCTTTTTTTAAATTCCGAGATTATTCG
TGTTTCGCGGAATTAATTTCACGGATATGCAAAAAAAACCGCGAAATTAA
ATTCCGTGGAAATTCGTTTCGCGAAAATTTGTTCCCTGAAGGTAGCATTT
TTATGCTCCTTAGAACATATTTATAAGAACATGATGCTCACGAACTCCAA
AAAATAAGAACACTTTGAGAACATTAGAGCCTGGAACTTTTTCATTTTGT
TTTTAGACATTTTATGAAAATGAAGTCTACCATTTTGGTTTTGTTGGTTG
TTGTGCTCATGGCAACCTTCCATACGAATGAAGGTAAGACACTGGATGAC
TATGAAAAATAGTTTACACTTTTTGAGAATTGATTTTTCTTTGATCAAAA
GCTTCAAAAGTAACGGACTAAAGCTTGATCATGAAGGGCAACACATCTCC
TTACACGAAGCAGGTCCCGTTTATAAAATAGGCTCCAATATACCATTAAG
CATAATATCGTTTTTTATAGTTGCGTCAAGGAGAGAACGGGATTTCCTTT
TGAATTTACAATATATTTTACATTCTAAATTCTAGCCTTTGGACCTTCTG
GTCGACCTTCTGGTAGAGTGAGTAGCGGCAAAGGAGTCGACAGAGCTCGT
AGAAATGCTATGGAAAACATAATGGCATCTAATGACAAGATTCTGGAAAG
ATTTGCTCAAGCTTTGAAACGAAGAAAAAGAAAGTCCGTTGACAATGCTG
AAGAAATCTAAAGCCGGTTTACGATTCGCTAACATTCTTATTTTTTTTAC
TACAAATTAATTTTTATTCTGAAAATTCTGCAATTATGTATTTTTTATTA
AAGTCCATTCACTGTTAGCTGTTAGAAACCACTCCCAAGGGGATTATTAG
TTGTTTTTTATAAGAACACCTGAAATTTTTGAAATTTTCCGATGTTCTAA
CTTTTTGATTTTAAGCCTAGGAATATTCTTAACATATTCTTATTTTCACC
ATTTTTTGAGCTTTTTTGACCATTTTCCTAATAAACTAGGTAGAGTGTAA
ACCCTTAAAATCTTCTTAACTTGTTCTTAATATTTTGGCCATCGAAATTT
TTCTTAAATTTTTAATATTTTGGCCATCGTTCTTAAACAGGTTGTTCATG
AACAAAAAAGTTCTCTAATTACGCTGCTGACATATTGTTTCCATGATAGG
AAAAAGTGCAGATTTAAAGTGAATGGACTCAATTTCTATGTATGTCATTC
ACGAGAAACGGTTTACCAAATGTTGTTTTAATACCTTTCTTAAACGAATG
ACTTTTTTCTGATGGAAGATAATCGCAATAAATTCATCATTTGCATCCTC
ATTTTAAAAAATCTTTAAAATTTTTTGCTTTAAATATATCCATTATAGCA
AGCAGAACAAATATCAGTGACATTTCGACGATCATTTTTTAGTACAAATA
TTTTCTTATATTACATAATAGCATAAACTGTAGGTAAAATGAATTCATTT
ATCTTTAATCCTCAAAAAGTCAGGTTTTGCGGGTATGAGTTGGTATCCCA
GATCTTTACCCCCTTTGCTTGAATTAGTTCTGTTTTTATTCCGTATAGAT
TTTGTATACATAAAAAACTCTTTGATTGAATAATATGTAATACGCAATTG
GAAACCCGTGTATTTAACCCCACTGTCCTTTTCTAAAAGAATTCCAATTG
TATCTGGCAATTATGAGCCCTAAAGCAGATCCTAGAAAGTGTAAAGCAAG
AATTTGACTATCCATTGGTTCAAGAAAGAACAGTAGAATCGGTTATATCT
CAGGAATACTCGTCATTTAAGTTAGTACCTTGAACTGAAATTGGGTAAGG
ATCATCCAATTTATTAATTTTTGTAATAAGTGCTGTTCAGTTTCCTAAAA
GAACCCCATTTTTGGATCAATAAAGCCCTCGTGTGTACAATTTGAGCTCA
AAAATTTAACTTGATGAAGGTTGCTCAAAACCGGGTAATTTTGGAAATGT
TTGATTTTAGATCCCTCAAAATCCCGCCATATCCCGCGAAAGATCCTTCA
AAATCGGAATCGGAATAACTTCCGATTAGGAAAGAGTAGAGCTCTGAAAT
TTTCACTGGATGTCCGTTTTATTATTCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009846-exon-sc0000099-1575043694:320673..320827 | TCONS_00009846-exon-sc0000099-1575043694:320673..320827 | Clytia hemisphaerica | exon |
| TCONS_00009846-exon-sc0000099-1575043694:319545..319621 | TCONS_00009846-exon-sc0000099-1575043694:319545..319621 | Clytia hemisphaerica | exon |
| TCONS_00009846-exon-sc0000099-1575043694:317746..319292 | TCONS_00009846-exon-sc0000099-1575043694:317746..319292 | Clytia hemisphaerica | exon |
| TCONS_00009846-exon-sc0000099-1510915933:320673..320827 | TCONS_00009846-exon-sc0000099-1510915933:320673..320827 | Clytia hemisphaerica | exon |
| TCONS_00009846-exon-sc0000099-1510915933:319545..319621 | TCONS_00009846-exon-sc0000099-1510915933:319545..319621 | Clytia hemisphaerica | exon |
| TCONS_00009846-exon-sc0000099-1510915933:317746..319292 | TCONS_00009846-exon-sc0000099-1510915933:317746..319292 | Clytia hemisphaerica | exon |
| TCONS_00009846-exon-sc0000099-1491911889:320673..320827 | TCONS_00009846-exon-sc0000099-1491911889:320673..320827 | Clytia hemisphaerica | exon |
| TCONS_00009846-exon-sc0000099-1491911889:319545..319621 | TCONS_00009846-exon-sc0000099-1491911889:319545..319621 | Clytia hemisphaerica | exon |
| TCONS_00009846-exon-sc0000099-1491911889:317746..319292 | TCONS_00009846-exon-sc0000099-1491911889:317746..319292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:317746..320827 - |
Blast
The following BLAST results are available for this feature:
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