TCONS_00009876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009876
Unique NameTCONS_00009876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009876 ID=TCONS_00009876|Name=TCONS_00009876|organism=Clytia hemisphaerica|type=transcript|length=680bp
TTAAAAATGAAGACAAGATACGGAACAGACTTTCAAAGCTAATGATAAAG
AATTATGGCCCAGAAAAACCGTCAACAGCATATCCTATCAAGAAGTTCGC
TCAATTccatggaaattttttgatttgagatACGGGGATGATTACCTAGG
TTGTAATTCATTTTTTCGTTTGGTGGGAAAAAGTTTAGCCATTCTGTTTG
AATCATTCTGTGTTAAAGACTCGATTGGAAATTCAAGAGTATGTTTGAAA
AAAGGGCTGATTATTTTTAAAGTCAAATATgctgaaattaatgatgaaga
gatgaaaatattgcatatttttaaatagtttttgaTAATTCCGCATATTT
TGCTATATTCagatatattttgaaatctttatagatccctgtatatattt
ttgaaatcaaagttttttttttaattttagacaATATTACGATTAAAATT
ATTATAATTAATATGATACAGATGTACGATAAAATTAACCCAGGCACGTT
TTCATTGCTTCACAAATTCCATACATTCGCTATTGAGGGAATAGTTCCAA
AGGATAAACTGGGAAGGTCCTTGGGTTGATCCAAAGTTGATCCAGAGACT
GAAGTTTCATTAACTCTGGCCATCATCTTGAAATGTAATTATATCCTCTG
AGATCTATTTAGTTCAAAAGATTAAAACAG
Run BLAST on NCBI

transcript from alignment at sc0000099:403051..403730

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009876 ID=TCONS_00009876|Name=TCONS_00009876|organism=Clytia hemisphaerica|type=transcript|length=680bp|location=Sequence derived from alignment at sc0000099:403051..403730 (Clytia hemisphaerica)
CTGTTTTAATCTTTTGAACTAAATAGATCTCAGAGGATATAATTACATTT
CAAGATGATGGCCAGAGTTAATGAAACTTCAGTCTCTGGATCAACTTTGG
ATCAACCCAAGGACCTTCCCAGTTTATCCTTTGGAACTATTCCCTCAATA
GCGAATGTATGGAATTTGTGAAGCAATGAAAACGTGCCTGGGTTAATTTT
ATCGTACATCTGTATCATATTAATTATAATAATTTTAATCGTAATATtgt
ctaaaattaaaaaaaaaactttgatttcaaaaatatatacagggatctat
aaagatttcaaaatatatctGAATATAGCAAAATATGCGGAATTAtcaaa
aactatttaaaaatatgcaatattttcatctcttcatcattaatttcagc
ATATTTGACTTTAAAAATAATCAGCCCTTTTTTCAAACATACTCTTGAAT
TTCCAATCGAGTCTTTAACACAGAATGATTCAAACAGAATGGCTAAACTT
TTTCCCACCAAACGAAAAAATGAATTACAACCTAGGTAATCATCCCCGTa
tctcaaatcaaaaaatttccatggAATTGAGCGAACTTCTTGATAGGATA
TGCTGTTGACGGTTTTTCTGGGCCATAATTCTTTATCATTAGCTTTGAAA
GTCTGTTCCGTATCTTGTCTTCATTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005530XLOC_005530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009876-exon-sc0000099-1491911889:403051..403730TCONS_00009876-exon-sc0000099-1491911889:403051..403730Clytia hemisphaericaexon
TCONS_00009876-exon-sc0000099-1510915933:403051..403730TCONS_00009876-exon-sc0000099-1510915933:403051..403730Clytia hemisphaericaexon
TCONS_00009876-exon-sc0000099-1575043694:403051..403730TCONS_00009876-exon-sc0000099-1575043694:403051..403730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:403051..403730 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0987101	0.194507	0.0806649	0.152627	0.367814	0.458779	0.931194	0.498691	0.851167	0.39582	0.3632	0.165061	0.511607	1.0536	0.715533	0.739722	0.883988	0.0829835	0	0.103285	0.220456	2.24663	1.8171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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