TCONS_00009905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009905
Unique NameTCONS_00009905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length956

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009905 ID=TCONS_00009905|Name=TCONS_00009905|organism=Clytia hemisphaerica|type=transcript|length=956bp
ATTGCTGGAAATCCTATGCAAGTGTGTGtTGATGGATACATCTTTGAGCG
AAATGATGAGGTAGGGGTGACATGGGTGGAAGCAGAATTTgacgtttgcc
gaaaaaaaggAGGTCATTTAGCTTCCGTTACAAGTGATGATCAAGTGGTA
GCTATGGAGATGCTCCTTCCTACAGGTGAACAAGCATGGCTTGGTACAGA
AGTAGTGATGGGAACCGGTCCCTTCAATAATGATAAAACAGAAGTACCTA
TGGACGTATCAGCACAAATAACGACGGCAGGAAACGCACTAGTTATTGGA
GATGGAAACGGGGCAATTACTGATTTAGGCGAACTTAATCCAATTTCTAC
AGATGTCAATCATTTCTTTTGCAAATACAATTATTTCCATAacaggaaaa
tttattttggattTCCTGTCACAGGCATGACCCAACCTGATACTGCTACA
GAATGTGAAATGCTTGGTGAACCTAAGGATGGACGTATTATTCAAATCGA
TAGTGGAAAACTTCAAAACTTCGTGAATGCAGAAGTTGACCGATTAGTTG
AGAAGGCAGATCCTGAGGAATATTTGTTTTGGATAAACATGAAATACAGC
GAAACGACCATGAAATACAAGTGGGGTGTTGAAGGGACTTATTCACCTTT
CCGTAAATGGTGTACCGCACAACCAGACGATGAAGTGATAGAGGCAGATG
ATCGTTGTGTAGCTTTGACTGGTTCTGGATGTTGGAAAGTTTATGCTTGT
AGTATGGCATCCGATACTATAACCGCTACTGATACTACAATCAATCCTTT
TCTTACTATGTGCGAGTTCGATATCCGTGAGTCAAACCCAACCAACCATG
AATTATTCACTTTGATTCAAGTTTTAAGATCAAATGTCAATGAAATCACT
AAAGATTGTAAACGATGCAAAGGTGTTGAATAGAACTATAAAACTTTTCT
TTCCTG
Run BLAST on NCBI

transcript from alignment at sc0000100:159809..164039+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009905 ID=TCONS_00009905|Name=TCONS_00009905|organism=Clytia hemisphaerica|type=transcript|length=4231bp|location=Sequence derived from alignment at sc0000100:159809..164039+ (Clytia hemisphaerica)
ATTGCTGGAAATCCTATGCAAGTGTGTGGTATGTAAATCATTTAACTAGG
AGTAGTAGACGTAGAAAAATTAGGAAATAGGAAACAATTATTCTTGAAGA
AAGCTTTACTTAAAACAACTTTTGTTCAGTAGCGTTCtggcttgtttttt
tttggggtGCCCACTGCAAATTCGTTTCCATGTATGTTTTGAAGGAGTTC
AGTCCTTTAGTACCTACTTCCTTCACAATATTACTTCAGAATAAATAATG
TAGAATCATTACTTTCAATAATTACCAATTTTTGACGcttctttttatct
tttagtTGATGGATACATCTTTGAGCGAAATGATGAGGTAGGGGTGACAT
GGGTGGAAGCAGAATTTgacgtttgccgaaaaaaaggAGGTCATTTAGCT
TCCGTTACAAGTGATGATCAAGTGGTAGCTATGGAGATGCTCCTTCCTAC
AGGGTAATTTTTGAGATGAACCCTTAAAAAGTTACATTCAAATCTACTTG
TTATATTCTGAGATAAcactctttcattgaatattttttatgcGTTTTCT
CATTGCGATTTAGTTGGTTTAGTGAAAGCGGATAAAACATAACGTAATGA
CTCCAAAAAACATTACATAATCCTATATAGCGACCAATAAAGATAACAAA
TATTTTGCAGATAATTTTTTGAGTCGAAAAGGTGACTATCAAACATTTGC
CCTtaatattttatccaaaaaggCCTTTTGTTGTAGTAATAGATATACCC
ACACTTCAAATTACCTTGAGGGAAATTAATTTTTACgggaaatcaaattt
tttcccgGTTTTACGAATTAcaaatttggctgtttttctttaataaattt
gaaaaattagggCTAAATTAAAggaaatttgtccaaaatagGGCCGAACT
CTGAAAATATATGACCGcgaaatgccattttttcaaactttctttcgCCC
ACGAAAATTAATTCCAGCCAGAATTAGTTAAGTTAAGGTAGGTTTCAATA
AATTTCTGAAATGCACTTCTCCTTCCTTTAGTGAACAAGCATGGCTTGGT
ACAGAAGTAGTGATGGGAACCGGTCCCTTCAATAATGATAAAACAGAAGT
ACCTATGGACGTATCAGCACAAATAACGACGGCAGGAAACGCACTAGTTA
TTGGAGATGGAAACGGGGCAATTACTGATTTAGGCGAACTTAATCCAATT
TCTACAGATGTCAATCATTTCTTTTGCAAATACAATTATTTCCATAacag
gaaaatttattttggattTCCTGTCACAGGTATTTTATAAGGAAATTATA
GGTTTTGCTGACtctaaaaagaacaaaaacaattaaaaaatggcgaaaat
aagaatatattaaaaatatctttagacttaaaactaaAAACAGTTAATAT
AATAACATCTCGaggctttaaagatttttaatgtTGTTGTAAAATAACGT
GTATagttatatatttattttctttggcAGGCATGACCCAACCTGATACT
GCTACAGAATGTGAAATGCTTGGTGAACCTAAGGATGGACGTATTATTCA
AATCGATAGTGGAAAACTTCAAAACTTCGTGAATGCAGAAGTTGACCGAT
TGTAAGGAGAATTAACTCTCATCGCTAATCCAAGGCTNATGCAGAAGTTG
ACCGATTGTAAGTAGAATTAACTCTCATCGCTAATCCAAGGCTGGAAGCA
TTCAGTTTAAATCCCGAatggctagagtagaatctctaacctttctcagg
aaAGATAAAGTAAAACCACTTATTTGACATCCAGAACCCACCTAGAACGC
AGTGGAATCATAACAACGGATTGTATCTaatggtttctttgtttttgagg
actacatttttttttatcaaaacttaagtggcttcatttctacacccctg
tgtcacagacccggtggaccccccatcccggtggaaaaataggccaaaaa
atcgtttCCGGTTGAAAGAATATCCTacattttcaaccccactgcgaaat
tgttgatgattttatccccattgaaaactgaatgtaaaaagctgcattcc
aaaaccatccccactgaaattttcgagctggaaagaatagattttctatc
cccattggcattttgatagaaattttcatccccactgagggaaaaagttc
taccgggcactgagacaggggtgtccactggaaacccttcccactggaaa
aattggcaaaaatatcatCCCCAGTAGAAAATTATACACTaacttttgtc
cccactgaaaataatcagataagccattcctcactgcaaattattgtgct
attttttccgtCTCCACTGATTTTTCTGgctaaaaaacaatagaattcaa
atccccagccatgaaAAAAACATGGAAATGTCAATTtccatcgagttttg
gttcACTATTTTTATTCCCAATGGCTGAAAAAACCCAACCAGGTCTGTGG
GAAGGGGGTGTTTAAATTCTCCTTAAAAACTCTTCTcggaatcaattacc
atagcaatagtTTGGAAACGAGGTTATCGTTGCTCaggacgtaatttatg
aaaaggtctattcactCGATTACAATAATTTAAACTACATACTCATTTAT
TAAAACATAATTTGTTCATTGAATACCATAGAGTTGAGAAGGCAGATCCT
GAGGAATATTTGTTTTGGATAAACATGAAATACAGCGAAACGACCATGAA
ATACAAGTGGGGTGTTGAAGGGACTTATTCACCTTTCCGTAAATGGTGTA
CCGGTAAGTCTaatcaaatacacgtttttataagaacaaacttatTAAGA
ACATAAgattttcgtgacttttttttagcagattcatataaaaaagtcac
gaaaaaacattgcgtgatTGGCTAAACATATATAAGCAAATTTTTTCAAG
TGTCCAAAGTATGAGGCAATCTTTACATATCTGAGCAAATCAGAGCTTAA
CTGGCTTAACTCAAGGTTCTTTTGTGACTTTTTATATGAAGCTGCTAATG
GGAAATACGTGTAATGTAACGATTTGTAAATTCAGTAAAAAGAAaaaccc
tttctcacagacctggtaggattttttcagccagtggggtaaaaataacg
gattaAGACTCAATGgtgattgatgtttttttatggctactctcgggtac
ctaatagccgccccctcCCGCTTATCAATTTTGGGGAAAACGTTTTGGAA
AGTTCCCTTTTtagtcctaattctgctgtatttgcctccttttcaaaaac
tttccacccaggacatttttattccaaccaccccccccccacatgcttat
taagttttgagattttttctaaCCCCGCACTCcacttattccaatccccc
aaATATTAGATAAACGAGAGTAAAGATTGGAATTCCATTATTTCCTAATC
AGAAAATCCAAtgaggatggaaaaaatagcactcAGTATGTGAGAAGGGT
TCCAAGTGGTTCTGAGAGAAGGGTGTTGTTAAGATTCATTTGCTTTAACT
GTGCGGTCTCTTTATTAAAACGGtgcaaattaaaagtgaattaacttcaa
tttatttctataaaaataaGGATCTGTTGAAATCAGATTTGGGTGATAAG
CTAACCAAAAACACCTTTGATTTGCTACCATTTTAAGTAAGGCTAGGGGT
CTTCAGTTTGCTGGTAGCATTGCCTTTGGGTGTCCTTATAAGTCTTCTCC
TCCCAAAacaattggaatctaaagtgtCTTTTTGGCTCAATAAAGATCGA
GAGCTGTGAACAGGAGCACCTGGACATTATAACACATTATAGTGACTGGA
AAAGTGCGACCATAATTTAAGATTGAATCCGTCATCTCTACCGCGTGGTC
AAAAGATGATGTTGATGCAGCAGACATTGGGAAAATAATATTACTAAACT
TTAATACTTAATAaactaaaatatttgtttcaTCTTTTGTAGCACAACCA
GACGATGAAGTGATAGAGGCAGATGATCGTTGTGTAGCTTTGACTGGTTC
TGGATGTTGGAAAGTTTATGCTTGTAGTATGGCATCCGATACTATAACCG
CTACTGATACTACAATCAATCCTTTTCTTACTATGTGCGAGTTCGATATC
CGTGAGTCAAACCCAACCAACCATGAATTATTCACTTTGATTCAAGTTTT
AAGATCAAATGTCAATGAAATCACTAAAGATTGTAAACGATGCAAAGGTG
TTGAATAGAACTATAAAACTTTTCTTTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005552XLOC_005552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009905-exon-sc0000100-1491911889:159809..159836TCONS_00009905-exon-sc0000100-1491911889:159809..159836Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1510915933:159809..159836TCONS_00009905-exon-sc0000100-1510915933:159809..159836Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1575043694:159809..159836TCONS_00009905-exon-sc0000100-1575043694:159809..159836Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1491911889:160114..160261TCONS_00009905-exon-sc0000100-1491911889:160114..160261Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1510915933:160114..160261TCONS_00009905-exon-sc0000100-1510915933:160114..160261Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1575043694:160114..160261TCONS_00009905-exon-sc0000100-1575043694:160114..160261Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1491911889:160840..161087TCONS_00009905-exon-sc0000100-1491911889:160840..161087Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1510915933:160840..161087TCONS_00009905-exon-sc0000100-1510915933:160840..161087Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1575043694:160840..161087TCONS_00009905-exon-sc0000100-1575043694:160840..161087Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1491911889:161289..161409TCONS_00009905-exon-sc0000100-1491911889:161289..161409Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1510915933:161289..161409TCONS_00009905-exon-sc0000100-1510915933:161289..161409Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1575043694:161289..161409TCONS_00009905-exon-sc0000100-1575043694:161289..161409Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1491911889:162440..162561TCONS_00009905-exon-sc0000100-1491911889:162440..162561Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1510915933:162440..162561TCONS_00009905-exon-sc0000100-1510915933:162440..162561Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1575043694:162440..162561TCONS_00009905-exon-sc0000100-1575043694:162440..162561Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1491911889:163751..164039TCONS_00009905-exon-sc0000100-1491911889:163751..164039Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1510915933:163751..164039TCONS_00009905-exon-sc0000100-1510915933:163751..164039Clytia hemisphaericaexon
TCONS_00009905-exon-sc0000100-1575043694:163751..164039TCONS_00009905-exon-sc0000100-1575043694:163751..164039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:159809..164039 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.22038e-06	0.0675042	0	0	0.182692	1.11198	0.358751	0.83857	1.71218	1.83745	0.406035	1.29935	1.46294	0.180681	0	0.136631	0.252352	0.252054	0.254038	0.0672588	0.101613	0	0	0.442375	0.78935	0.276071	0.45613	0	0.196419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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