TCONS_00009909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009909
Unique NameTCONS_00009909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009909 ID=TCONS_00009909|Name=TCONS_00009909|organism=Clytia hemisphaerica|type=transcript|length=482bp
GTCCAATCTGACAAACCGATCGACCACGCTGAAGCTTTCGGCCGAATCGC
GTTCGCTTGCCCCAGCAATGAATTGAAAGGAATCGAGGCTAAAATGAAAG
AAGCTGGTACCACCATTTTGACTTCGTACATTAGTCTGGACACTCCTGGA
AAAGCTACAGTCCAAGTTGTAATTCTGGCTGATTTGGATGGACACgaaat
ttgttttgttggtAATGAGGGGTTCCGCGAATTATCACAAGTCGATCCGG
AAGCTGACAATCTTTTAAATAAGGCGATGGCAGAAGACAAGAGCGACGAA
TGGTTTGCTAAAATGCAAGCAAGAAAACAACGGATGGAAGAAGCTCAGGC
TGCCAAGAAAGATTGAAAACAACAAgtaatttcattttgaatattattCA
ACGGTGAAACTATAAGGTGTACTGAGCTAagtcaatgggcttttccagaa
aaattttgaatatgggggggggtggaggatat
Run BLAST on NCBI

protein sequence of TCONS_00009909-protein

>TCONS_00009909-protein ID=TCONS_00009909-protein|Name=TCONS_00009909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
VQSDKPIDHAEAFGRIAFACPSNELKGIEAKMKEAGTTILTSYISLDTPG
KATVQVVILADLDGHEICFVGNEGFRELSQVDPEADNLLNKAMAEDKSDE
WFAKMQARKQRMEEAQAAKKD
Run BLAST on NCBI

transcript from alignment at sc0000100:237405..239544+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009909 ID=TCONS_00009909|Name=TCONS_00009909|organism=Clytia hemisphaerica|type=transcript|length=2140bp|location=Sequence derived from alignment at sc0000100:237405..239544+ (Clytia hemisphaerica)
GTCCAATCTGACAAACCGATCGACCACGCTGAAGCTTTCGGCCGAATCGC
GTTCGCTTGCCCCAGCAATGAATTGAAAGGAATCGAGGCTAAAATGAAAG
AAGCTGGTACCACCATTTTGACTTCGTACATTAGTCTGGACACTCCTGGA
AAAGCTACAGTCCAAGTTGTAATTCTGGCTGATTTGGtaagcaagaaaaa
aaaaatattgacaaaacaACTGTTATCGTCATACTTAAAAAGGAGCGGAA
AAACTTTTGGTCAACAATTCAAGTTTACTGCTAAACTAAATGGCAAATTT
TTAAAAGAGCAGGAAAATTTAAATACAATCAACTCTCAATAATCATCTGA
ACCCCTactattcaaatctttctatgaTTCGAACTGAAGTATTGGTCCCC
TCTGCTAGGAATTGGTAGAAATTATCTTCTGTATTTCCGagaaaattctt
ggtcccttgaacatcgaattagagagaatgtTCTGTAttgataaatttca
attttaatgtCGACTTGAGAATAGGACGTTTTAAAATTTCTATGAAAACG
TTCAGTTCTGATAAAATATGGGCTTAGCGCTTAAGGCCATGaagacgcac
cggactgtccaaTGGTTTTGGTCAATGTCGAAAAGTATCATTAAATTACG
CCGGTCTGGTGTTGGTCCGGTCTTACATTGCACGAATTCGTGACATTGGA
CAAACAccatacttttttctttagctttttAGCGCCCACGGGACTGATTG
ACGTcctgtccggtggtaaaaagttTTCTCATTGGACACCGGGTGGTGTT
TCCGTACTCTCTGGTACCTAATAGACGGGGGGGCTTGGAATAAGTGGgag
gggtggaaaatttttcaaaaattaattagcgcttattaggtacccgagag
taagtccggtgcgtcggaaAGGTCTTGCGTTTAGTAACTCTCCCATTGAT
TTTTTCAGGATGGACACgaaatttgttttgttggtAATGAGGGGTTCCGC
GAATTATCACAAGTCGATCCGGAAGCTGACAATCTTTTAAATAAGGTATC
GtattatttaaaatttaaaatttaggtCCTGCTCACTTATCTTTTGCTAG
TAAAAGTATTAGTCTTAGTGAAAAATTGTGGAGAAAACATCCTCCACCTT
GCCCGATGATGGAAGAAGAATCTCCCGAAACGTAGCTAAACGTAGATCCA
AgtcacgataaacttccaataagAAAAGGTCGATAAGGTCAAACTTATTT
GGATGTAGTAGATATAGTAGTGATAGGAAAGTTTGTCCATTTGATATTGA
AGACTGATAGAAAACAAATTATGTCTTGGGTGACGTCATTGGGGGTTGAT
GTAATTACTTCACACTCAATTTCTGAAGTTTTCCTGAGCTCAAACTTTGA
CAAATCCTCCATCCCATGTGAATAAATTCTTTCCGAAAGAGCCtatccgt
atattacttttcagTGAGCAATGGTtgagtggtctaaggcgtcagctgaa
aaaaaaaacagtgctTCCCGTTTCGAACTTGAGTCTTCCCGCGTTGCACT
CATTTCCGGCTAACCGTCGATCCTGAGAAAACAATCGAAAGTCTTAATat
taaatataaaatattttgcgaATCAAcccgtaaaattgagaattttcaca
tgaaaaaaaagcttagagggacaaaatacttcttggattggtcTGAAACT
TTTGTCCTTTGAAtaattagtcttttagcaggctaaaaagtgccatcatg
gttacattttattcaaagtttgaagtcttacagattttctattttgtcaa
gaatttttacgcgaatggcccttcctagaatttttaaagacatttacttt
cgcgaaaaggaccaaaattcgcgaaaatcgcgaaagtttcagCTCGCGAA
AGTCTGTACGCCTAAATTATATATTTTGCAGGCGATGGCAGAAGACAAGA
GCGACGAATGGTTTGCTAAAATGCAAGCAAGAAAACAACGGATGGAAGAA
GCTCAGGCTGCCAAGAAAGATTGAAAACAACAAgtaatttcattttgaat
attattCAACGGTGAAACTATAAGGTGTACTGAGCTAagtcaatgggctt
ttccagaaaaattttgaatatgggggggggtggaggatat

Coding sequence (CDS) from alignment at sc0000100:237405..239544+

>TCONS_00009909 ID=TCONS_00009909|Name=TCONS_00009909|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000100:237405..239544+ (Clytia hemisphaerica)
GTCCAATCTGACAAACCGATCGACCACGCTGAAGCTTTCGGCCGAATCGC
GTTCGCTTGCCCCAGCAATGAATTGAAAGGAATCGAGGCTAAAATGAAAG
AAGCTGGTACCACCATTTTGACTTCGTACATTAGTCTGGACACTCCTGGA
AAAGCTACAGTCCAAGTTGTAATTCTGGCTGATTTGGATGGACACgaaat
ttgttttgttggtAATGAGGGGTTCCGCGAATTATCACAAGTCGATCCGG
AAGCTGACAATCTTTTAAATAAGGCGATGGCAGAAGACAAGAGCGACGAA
TGGTTTGCTAAAATGCAAGCAAGAAAACAACGGATGGAAGAAGCTCAGGC
TGCCAAGAAAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005556XLOC_005556Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009909-proteinTCONS_00009909-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009909-exon-sc0000100-1491911889:237405..237590TCONS_00009909-exon-sc0000100-1491911889:237405..237590Clytia hemisphaericaexon
TCONS_00009909-exon-sc0000100-1510915933:237405..237590TCONS_00009909-exon-sc0000100-1510915933:237405..237590Clytia hemisphaericaexon
TCONS_00009909-exon-sc0000100-1575043694:237405..237590TCONS_00009909-exon-sc0000100-1575043694:237405..237590Clytia hemisphaericaexon
TCONS_00009909-exon-sc0000100-1491911889:238363..238449TCONS_00009909-exon-sc0000100-1491911889:238363..238449Clytia hemisphaericaexon
TCONS_00009909-exon-sc0000100-1510915933:238363..238449TCONS_00009909-exon-sc0000100-1510915933:238363..238449Clytia hemisphaericaexon
TCONS_00009909-exon-sc0000100-1575043694:238363..238449TCONS_00009909-exon-sc0000100-1575043694:238363..238449Clytia hemisphaericaexon
TCONS_00009909-exon-sc0000100-1491911889:239336..239544TCONS_00009909-exon-sc0000100-1491911889:239336..239544Clytia hemisphaericaexon
TCONS_00009909-exon-sc0000100-1510915933:239336..239544TCONS_00009909-exon-sc0000100-1510915933:239336..239544Clytia hemisphaericaexon
TCONS_00009909-exon-sc0000100-1575043694:239336..239544TCONS_00009909-exon-sc0000100-1575043694:239336..239544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:237405..239544 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.112	52.7183	19.2756	16.6988	49.421	45.562	50.6246	58.6561	52.4556	48.8328	53.7181	44.1402	42.2638	41.0191	45.3088	47.9105	47.6077	40.697	31.3589	36.718	23.1192	23.3502	38.89	41.1817	50.2297	54.7908	22.2743	19.0174	53.6573	42.7647
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029068Glyas_Bleomycin-R_OHBP_Dase
Blast
[Close]
BLAST of TCONS_00009909 vs. Swiss-Prot (Human)
Match: GLOD4 (Glyoxalase domain-containing protein 4 OS=Homo sapiens GN=GLOD4 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.290e-42
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   19 IDHAEAFGRIAFACPSNELKGIEAKMKEAGTTILTSYISLDTPGKATVQVVILADLDGHEICFVGNEGFRELSQVDPEADNLLNKAMAEDKSDEWFAK 312
            +DHA AFGRIAF+CP  EL  +E  MK     ILT  +SLDTPGKATVQVVILAD DGHEICFVG+E FRELS++DPE   LL+ AMA DKSDEWFAK
Sbjct:  208 VDHAAAFGRIAFSCPQKELPDLEDLMKRENQKILTPLVSLDTPGKATVQVVILADPDGHEICFVGDEAFRELSKMDPEGSKLLDDAMAADKSDEWFAK 305
The following BLAST results are available for this feature:
BLAST of TCONS_00009909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLOD43.290e-4270.41Glyoxalase domain-containing protein 4 OS=Homo sap... [more]
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