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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009914 ID=TCONS_00009914|Name=TCONS_00009914|organism=Clytia hemisphaerica|type=transcript|length=1580bpRun BLAST on NCBI protein sequence of TCONS_00009914-protein >TCONS_00009914-protein ID=TCONS_00009914-protein|Name=TCONS_00009914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp MDFLEYLVIRSLFTALVVLVNAPLQRVDGLSSVAEIYNANSFDLIRSSSYRun BLAST on NCBI transcript from alignment at sc0000100:355028..371451+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009914 ID=TCONS_00009914|Name=TCONS_00009914|organism=Clytia hemisphaerica|type=transcript|length=16424bp|location=Sequence derived from alignment at sc0000100:355028..371451+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000100:355028..371451+ >TCONS_00009914 ID=TCONS_00009914|Name=TCONS_00009914|organism=Clytia hemisphaerica|type=CDS|length=16848bp|location=Sequence derived from alignment at sc0000100:355028..371451+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009914 vs. Swiss-Prot (Human)
Match: TXND5 (Thioredoxin domain-containing protein 5 OS=Homo sapiens GN=TXNDC5 PE=1 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 8.582e-47 Identity = 107/373 (28.69%), Postives = 183/373 (49.06%), Query Frame = 2
Query: 218 IYNANSF-DLIRSSSYPHFVMFHAPWCSHCTKMSPVWDEYARQNHKLKRMKI--AKLDCSEYTPLCASEKIKAYPTFRLFD-QYKAFTFRGTTRSIREFNKFVEQKSPNIKNGKVPEASDKQHKTHSSTQQKQQPKKRQGVVELTEDSFEKVVADGITFVDFFAPWCSHCRKLEPVWKQLADRFAHDSRVTIAKVDCTAQPNLCTSKSISAYPTLNLYKEGNQLSAYNYDRTLEALTSFINNVLD-TEPQPSSMDDQMAGEEFPVVEQEGNLPKAHENPAPIYSNNLKTVKWLDRFQIDEELTQKPLVVYLHDPWQPESVKGLAEFEELGR--IMDKVDMKITPVFFSCTTDKAYCQKFTDKS-PTVVFFHSS 1312
+Y A+ F I+S++ HFVMF APWC HC ++ P W++ + + ++ K+ AK+DC+ ++ +C+++ ++ YPT +LF +A ++G R+F ++N + +++ + P+ +QG+ EL+ +FE VA G F+ FFAPWC HC+ L P W+QLA H V I KVDCT LC+ + YPTL +++G ++ Y R LE+L ++ + L TE + + + E PV+ E P+A + TV L D+ + + + + PW +EEL + +KI V CT ++ C K++ + PT++ F
Sbjct: 65 LYTADMFTHGIQSAA--HFVMFFAPWCGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTAHSDVCSAQGVRGYPTLKLFKPGQEAVKYQGP----RDFQ--------TLENWMLQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLESLREYVESQLQRTE---TGATETVTPSEAPVLAAE---PEADKG----------TVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV--DCTAERNICSKYSVRGYPTLLLFRGG 405 HSP 2 Score: 166.007 bits (419), Expect = 4.847e-45 Identity = 79/237 (33.33%), Postives = 141/237 (59.49%), Query Frame = 2
Query: 224 NANSFDLIRSSSYPHFVMFHAPWCSHCTKMSPVWDEYARQNHKLKRMKIAKLDCSEYTPLCASEKIKAYPTFRLF-DQYKAFTFRGTTRSIREFNKFVEQKSPNIKNGKVPEASDKQHKTHSSTQQKQQPKKRQG-VVELTEDSFEKVVADGITFVDFFAPWCSHCRKLEPVWKQLADR-FAHDSRVTIAKVDCTAQPNLCTSKSISAYPTLNLYKEGNQLSAYNYDRTLEALTSFI 925
+A++F+L + HF+ F APWC HC ++P W++ A + +KI K+DC+++ LC+ +++ YPT F D K ++G R + ++VE + + G + + ++ +P+ +G V+ LTE++F+ +A+GITF+ F+APWC HC+ L P W++L+ + F + V IA+VDCTA+ N+C+ S+ YPTL L++ G ++S ++ R L++L F+
Sbjct: 195 SASNFEL-HVAQGDHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGK-RDLESLREYVESQLQRTETGATETVTPSEAPVLAA-----EPEADKGTVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 424 The following BLAST results are available for this feature:
BLAST of TCONS_00009914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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