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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009926 ID=TCONS_00009926|Name=TCONS_00009926|organism=Clytia hemisphaerica|type=transcript|length=1106bp
GGTAAatgatagaaaaaaataattatgtaAATTTTGTCCGACTACATAAA
ATCAGGAGGTTTGTTGGTGGCAAAGTGAAAGATCCGAGTAAGAAAGATAA
AGAACACACACCTCACACAAACAATGATAGAACACGAGAACATCCAGAAG
AGACCATTATCGCCGGGCAAGCAAGATATCCTATGGGCATTTTATGTTCC
AATATGTAGCATCATTTGTATCTTTGGTATCCTTGGTAACATCATTTCAC
TCATCGTATGGAGAAAGCTTAGGAACAGatttcgtGCGCGGAATGTTAGT
ACCACGACATATTTCATGCTACTTTCCGCTATCGATATGGCTGTCTTAAT
CACAACCTTATTTGTAATGGTGCTTCCGTATGCAGAACATTCCGTGTTCA
AAAGCCGTTCGTACGCCTTCTTTTTCTCATATATTGGGCATCCGATTCAT
TTTTTCCTTATCTTCTTGAGTATTTATATGGTGATGGCAATGAGTTTGGA
TAGAGTTCGGTTGGTGTATCGACCTTTCAGTAGATATGACATTAACCAAC
ACAAGGTCTATCTAATGATTACAATATTCACGGGCGTGGCATTTGTTCTA
AATATTCCATCTTTCTTCGAATACCGCCCAACTTTGAACAAGCAAAACAC
ATGGGAATTGACTGAATTACGATATTTAAATCGTCGTGCTTTCAGAGACG
CCGTTTTCGTCACTCATTGCATAGGAGTTATAATGGTACCTTGGATGACA
ATGTTCATTTCAAATATTCtccttattttcaaatcatcaaACCGTCTTCG
TAACATGCGCAACATCACCACTAAAGATGAACCAAACGCTGACCACAAGC
AGTTGACCTACACATTAATTCTTGTCTCAGCCCTATCTCTGTTTTTATTG
GCTGTCCAATGTGTTGCACGTTGTATCACCATGTTTTACTTTGTTGATAA
CCATAATTGGAACAATATCTTTTTCGGACGAGAAATTGGGAATCTGACGC
TACCGATTAACTCGGCCTTAAACTTCGTCTTGTTTTGTTTACCGGGTAAA
CGGTTCCGTAAGGAATTACGCCGTCTATTACGCCGTTATTTATGCCGTCA
TCAACG Run BLAST on NCBI protein sequence of TCONS_00009926-protein >TCONS_00009926-protein ID=TCONS_00009926-protein|Name=TCONS_00009926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MIEHENIQKRPLSPGKQDILWAFYVPICSIICIFGILGNIISLIVWRKLR
NRFRARNVSTTTYFMLLSAIDMAVLITTLFVMVLPYAEHSVFKSRSYAFF
FSYIGHPIHFFLIFLSIYMVMAMSLDRVRLVYRPFSRYDINQHKVYLMIT
IFTGVAFVLNIPSFFEYRPTLNKQNTWELTELRYLNRRAFRDAVFVTHCI
GVIMVPWMTMFISNILLIFKSSNRLRNMRNITTKDEPNADHKQLTYTLIL
VSALSLFLLAVQCVARCITMFYFVDNHNWNNIFFGREIGNLTLPINSALN
FVLFCLPGKRFRKELRRLLRRYLCRHQ Run BLAST on NCBI transcript from alignment at sc0000100:290106..293059- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009926 ID=TCONS_00009926|Name=TCONS_00009926|organism=Clytia hemisphaerica|type=transcript|length=2954bp|location=Sequence derived from alignment at sc0000100:290106..293059- (Clytia hemisphaerica)
GGTAAATGATAGAAAAAAATAATTATGTAAATTTTGTCCGACTACATAAA
ATCAGGAGGTTTGTTGGTGGCAAAGTGAAAGATCCGAGTAAGAAAGATAA
AGAACACACACCTCACACAAACAATGATAGAACACGAGAACATCCAGAAG
AGACCATTATCGCCGGGCAAGCAAGATATCCTATGGGCATTTTATGTTCC
AATATGTAGCATCATTTGTATCTTTGGTATCCTTGGTAACATCATTTCAC
TCATCGTATGGAGAAAGCTTAGGAACAGGTAAGAATATGGCAGACCATGC
CATACTTTTTTTTTAAATAAAAGTTACTATTTTAAGCCATAAAAACTATT
ATTCTCCCCAATCAGATAACGTTTTAAGGTGTTTTGAAGGTGTAAAAAGT
GAAAAGTTTCTTTCGTCGCCCAACCATGGTGGCCGACATCTTTTCCAAAA
ATTATTGCACCCCCCCCCCCCCCCTCAAAATGGCAGGGCACATGTATGGG
TCATATTTTCAAAAGTTTTAAGCACCACCAAAAAGGACTACAGGCTTTTG
TCACTAGTTTTAACAATAAAGCCTATAGTAGACTATTAGACTAACATTGA
ATTGCTCTTTTTGAAGGCGTGCTAAAAGAAAAAAAATAACCCATCGTGCG
ATTAATTTTCTAATCAAACTTTTAACTTGCCGAGTAGTTCAAGTGAAGAC
TACTCTTATATAAATATTTTTTTTCAGATTTCGTGCGCGGAATGTTAGTA
CCACGACATATTTCATGCTACTTTCCGCTATCGATATGGCTGTCTTAATC
ACAACCTTATTTGTAATGGTGCTTCCGTATGCAGAACATTCCGTGTTCAA
AAGCCGTTCGTACGCCTTCTTTTTCTCATATATTGGGCATCCGATTCATT
TTTTCCTTATCTTCTTGAGTATTTATATGGTGATGGCAATGAGTTTGGAT
AGAGTTCGGTTGGTGTATCGACCTTTCAGTAGATATGACATTAACCAACA
CAAGGTACGCTTATTCTTAGCAGATCCTAGTATAAGCCACAGTAGTGCAG
TAGTAGAGCATCCGGCTACGGTGCATTTATTCTTAGAAAAAAAGCTATAT
GGCCGCTAAAATAACGTCCTTTGCAAACTGGGAAGACAGAAAACAACCAA
CTGTCGTTTCAATGTTCATCTTACCCATCTTAAATAACATTAAACTGACG
TTATGAACATTACCCCGCGGGGGAAGAGCACTTAGGCAAAGTCGGGTACA
GGACCCCACCGCTGGCCAGGGTCACTTTTTTAGGCCCTGAAGATATCTGA
CAGGGTCNGCGCCACTGGTCAGGGTCACTTTTTTAGGCTCTGAAAATATC
TGACAGGGTTCCAAATATACTAATTTTCAAGATGTGAATCTGACTAGGGT
CAACTTCTGGTTATATTATACAATTTTCAGGGTGGAAATTAGAAAAGCTT
TCAATTTACGTCTACTTTCAGTGATTTTTCAGTGATTTTTGCTACTTTTC
ATTGTGAAAAAAAGAAAATTTTAAATTTTTCGTTCTGACAGGGTCCTAAT
TTTCCGAAAATTTTTATCTGAACTTTTCAAACTACAGCGGCACTTCCCTG
TCGGCCGTCAAGGTTACTTTTTCTAAAGAACGCGTCATCTCTATCACTTC
AAATGACTAATTAGTGAAGTATCTTGTAAAAACTCCAGCTCATCCCAAAT
CTTTTGAATCCTTGAAAGACAAGCAGGGGTCCGAACAAAAATCAATCCAA
GTATCAAATCAAAATTTGAACTTATAATTTGAACATTTCTATTATCAAAT
TTCTAGGTCTATCTAATGATTACAATATTCACGGGCGTGGCATTTGTTCT
AAATATTCCATCTTTCTTCGAATACCGCCCAACTTTGAACAAGCAAAACA
CATGGGAATTGACTGAATTACGATATTTAAATCGTCGTGCTTTCAGAGAC
GCCGTTTTCGTCACTCATTGCATAGGTATGGTAAAACTTATCGAAAAAAA
TCGGTTTTGTCAAGTTTTATTATATGCTGTAGAAAGAGCTATGACGAACC
TGAAAATAAAGTTTAAAGACTCAAAATTTTGCCTGCATTATTTTGGTGAA
AACTAATTTTGATGAATTAAAAAATAAATTAAATTTCAAAAATAGAATAG
ACTTGGCCTGTCATTCACCAAAATTAGTTAATTTTCAAGATTTTTGCTGC
TCGCCAAAATTAGTTCTCGCCAAGTTCCTTTAATGTACAAGATGACAGCT
TCTACTTCAGACCCGACGGAAGTGGGGAGATTGACTGAGGAGCCTCCGTG
TTCTCGAGTATCTTGTCTCAAGTAACATCCATATCGTAAGTTTGTCTAAG
GTCGACATCTCTCATGTTATTCCGATATCCTTCTTAGAGAGAGGATGAAA
AGGAAGGTCGGAATCACTGATTGAAAGAATGTTTTCCCTTTGACCGTTTA
TTAGCGATCAGCGACTCCGATCATTTAATAATCCTTATCTCTAGTAAAGT
GTGTCGGAATTAGATGAGGGATGTCGAAGTTAGACAAACTTACAGTATTT
TCTTTCCCCATTTTCTTGACAGGAGTTATAATGGTACCTTGGATGACAAT
GTTCATTTCAAATATTCTCCTTATTTTCAAATCATCAAACCGTCTTCGTA
ACATGCGCAACATCACCACTAAAGATGAACCAAACGCTGACCACAAGCAG
TTGACCTACACATTAATTCTTGTCTCAGCCCTATCTCTGTTTTTATTGGC
TGTCCAATGTGTTGCACGTTGTATCACCATGTTTTACTTTGTTGATAACC
ATAATTGGAACAATATCTTTTTCGGACGAGAAATTGGGAATCTGACGCTA
CCGATTAACTCGGCCTTAAACTTCGTCTTGTTTTGTTTACCGGGTAAACG
GTTCCGTAAGGAATTACGCCGTCTATTACGCCGTTATTTATGCCGTCATC
AACG Coding sequence (CDS) from alignment at sc0000100:290106..293059- >TCONS_00009926 ID=TCONS_00009926|Name=TCONS_00009926|organism=Clytia hemisphaerica|type=CDS|length=3924bp|location=Sequence derived from alignment at sc0000100:290106..293059- (Clytia hemisphaerica)
GAGTTATAATGGTACCTTGGATGACAATGTTCATTTCAAATATTCTCCTT
ATTTTCAAATCATCAAACCGTCTTCGTAACATGCGCAACATCACCACTAA
AGATGAACCAAACGCTGACCACAAGCAGTTGACCTACACATTAATTCTTG
TCTCAGCCCTATCTCTGTTTTTATTGGCTGTCCAATGTGTTGCACGTTGT
ATCACCATGTTTTACTTTGTTGATAACCATAATTGGAACAATATCTTTTT
CGGACGAGAAATTGGGAATCTGACGCTACCGATTAACTCGGCCTTAAACT
TCGTCTTGTTTTGTTTACCGGGTAAACGGTTCCGTAAGGAATTACGCCGT
CTATTACGCCGTTATTTATGCCGTCATCAAGTCTATCTAATGATTACAAT
ATTCACGGGCGTGGCATTTGTTCTAAATATTCCATCTTTCTTCGAATACC
GCCCAACTTTGAACAAGCAAAACACATGGGAATTGACTGAATTACGATAT
TTAAATCGTCGTGCTTTCAGAGACGCCGTTTTCGTCACTCATTGCATAGA
TTTCGTGCGCGGAATGTTAGTACCACGACATATTTCATGCTACTTTCCGC
TATCGATATGGCTGTCTTAATCACAACCTTATTTGTAATGGTGCTTCCGT
ATGCAGAACATTCCGTGTTCAAAAGCCGTTCGTACGCCTTCTTTTTCTCA
TATATTGGGCATCCGATTCATTTTTTCCTTATCTTCTTGAGTATTTATAT
GGTGATGGCAATGAGTTTGGATAGAGTTCGGTTGGTGTATCGACCTTTCA
GTAGATATGACATTAACCAACACAAGATGATAGAACACGAGAACATCCAG
AAGAGACCATTATCGCCGGGCAAGCAAGATATCCTATGGGCATTTTATGT
TCCAATATGTAGCATCATTTGTATCTTTGGTATCCTTGGTAACATCATTT
CACTCATCGTATGGAGAAAGCTTAGGAACAGGAGTTATAATGGTACCTTG
GATGACAATGTTCATTTCAAATATTCTCCTTATTTTCAAATCATCAAACC
GTCTTCGTAACATGCGCAACATCACCACTAAAGATGAACCAAACGCTGAC
CACAAGCAGTTGACCTACACATTAATTCTTGTCTCAGCCCTATCTCTGTT
TTTATTGGCTGTCCAATGTGTTGCACGTTGTATCACCATGTTTTACTTTG
TTGATAACCATAATTGGAACAATATCTTTTTCGGACGAGAAATTGGGAAT
CTGACGCTACCGATTAACTCGGCCTTAAACTTCGTCTTGTTTTGTTTACC
GGGTAAACGGTTCCGTAAGGAATTACGCCGTCTATTACGCCGTTATTTAT
GCCGTCATCAAGTCTATCTAATGATTACAATATTCACGGGCGTGGCATTT
GTTCTAAATATTCCATCTTTCTTCGAATACCGCCCAACTTTGAACAAGCA
AAACACATGGGAATTGACTGAATTACGATATTTAAATCGTCGTGCTTTCA
GAGACGCCGTTTTCGTCACTCATTGCATAGATTTCGTGCGCGGAATGTTA
GTACCACGACATATTTCATGCTACTTTCCGCTATCGATATGGCTGTCTTA
ATCACAACCTTATTTGTAATGGTGCTTCCGTATGCAGAACATTCCGTGTT
CAAAAGCCGTTCGTACGCCTTCTTTTTCTCATATATTGGGCATCCGATTC
ATTTTTTCCTTATCTTCTTGAGTATTTATATGGTGATGGCAATGAGTTTG
GATAGAGTTCGGTTGGTGTATCGACCTTTCAGTAGATATGACATTAACCA
ACACAAGATGATAGAACACGAGAACATCCAGAAGAGACCATTATCGCCGG
GCAAGCAAGATATCCTATGGGCATTTTATGTTCCAATATGTAGCATCATT
TGTATCTTTGGTATCCTTGGTAACATCATTTCACTCATCGTATGGAGAAA
GCTTAGGAACAGGAGTTATAATGGTACCTTGGATGACAATGTTCATTTCA
AATATTCTCCTTATTTTCAAATCATCAAACCGTCTTCGTAACATGCGCAA
CATCACCACTAAAGATGAACCAAACGCTGACCACAAGCAGTTGACCTACA
CATTAATTCTTGTCTCAGCCCTATCTCTGTTTTTATTGGCTGTCCAATGT
GTTGCACGTTGTATCACCATGTTTTACTTTGTTGATAACCATAATTGGAA
CAATATCTTTTTCGGACGAGAAATTGGGAATCTGACGCTACCGATTAACT
CGGCCTTAAACTTCGTCTTGTTTTGTTTACCGGGTAAACGGTTCCGTAAG
GAATTACGCCGTCTATTACGCCGTTATTTATGCCGTCATCAAGTCTATCT
AATGATTACAATATTCACGGGCGTGGCATTTGTTCTAAATATTCCATCTT
TCTTCGAATACCGCCCAACTTTGAACAAGCAAAACACATGGGAATTGACT
GAATTACGATATTTAAATCGTCGTGCTTTCAGAGACGCCGTTTTCGTCAC
TCATTGCATAGATTTCGTGCGCGGAATGTTAGTACCACGACATATTTCAT
GCTACTTTCCGCTATCGATATGGCTGTCTTAATCACAACCTTATTTGTAA
TGGTGCTTCCGTATGCAGAACATTCCGTGTTCAAAAGCCGTTCGTACGCC
TTCTTTTTCTCATATATTGGGCATCCGATTCATTTTTTCCTTATCTTCTT
GAGTATTTATATGGTGATGGCAATGAGTTTGGATAGAGTTCGGTTGGTGT
ATCGACCTTTCAGTAGATATGACATTAACCAACACAAGATGATAGAACAC
GAGAACATCCAGAAGAGACCATTATCGCCGGGCAAGCAAGATATCCTATG
GGCATTTTATGTTCCAATATGTAGCATCATTTGTATCTTTGGTATCCTTG
GTAACATCATTTCACTCATCGTATGGAGAAAGCTTAGGAACAGGAGTTAT
AATGGTACCTTGGATGACAATGTTCATTTCAAATATTCTCCTTATTTTCA
AATCATCAAACCGTCTTCGTAACATGCGCAACATCACCACTAAAGATGAA
CCAAACGCTGACCACAAGCAGTTGACCTACACATTAATTCTTGTCTCAGC
CCTATCTCTGTTTTTATTGGCTGTCCAATGTGTTGCACGTTGTATCACCA
TGTTTTACTTTGTTGATAACCATAATTGGAACAATATCTTTTTCGGACGA
GAAATTGGGAATCTGACGCTACCGATTAACTCGGCCTTAAACTTCGTCTT
GTTTTGTTTACCGGGTAAACGGTTCCGTAAGGAATTACGCCGTCTATTAC
GCCGTTATTTATGCCGTCATCAAGTCTATCTAATGATTACAATATTCACG
GGCGTGGCATTTGTTCTAAATATTCCATCTTTCTTCGAATACCGCCCAAC
TTTGAACAAGCAAAACACATGGGAATTGACTGAATTACGATATTTAAATC
GTCGTGCTTTCAGAGACGCCGTTTTCGTCACTCATTGCATAGATTTCGTG
CGCGGAATGTTAGTACCACGACATATTTCATGCTACTTTCCGCTATCGAT
ATGGCTGTCTTAATCACAACCTTATTTGTAATGGTGCTTCCGTATGCAGA
ACATTCCGTGTTCAAAAGCCGTTCGTACGCCTTCTTTTTCTCATATATTG
GGCATCCGATTCATTTTTTCCTTATCTTCTTGAGTATTTATATGGTGATG
GCAATGAGTTTGGATAGAGTTCGGTTGGTGTATCGACCTTTCAGTAGATA
TGACATTAACCAACACAAGATGATAGAACACGAGAACATCCAGAAGAGAC
CATTATCGCCGGGCAAGCAAGATATCCTATGGGCATTTTATGTTCCAATA
TGTAGCATCATTTGTATCTTTGGTATCCTTGGTAACATCATTTCACTCAT
CGTATGGAGAAAGCTTAGGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009926-exon-sc0000100-1575043694:292782..293059 | TCONS_00009926-exon-sc0000100-1575043694:292782..293059 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1575043694:292056..292332 | TCONS_00009926-exon-sc0000100-1575043694:292056..292332 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1575043694:291085..291253 | TCONS_00009926-exon-sc0000100-1575043694:291085..291253 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1575043694:290106..290487 | TCONS_00009926-exon-sc0000100-1575043694:290106..290487 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1510915933:292782..293059 | TCONS_00009926-exon-sc0000100-1510915933:292782..293059 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1510915933:292056..292332 | TCONS_00009926-exon-sc0000100-1510915933:292056..292332 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1510915933:291085..291253 | TCONS_00009926-exon-sc0000100-1510915933:291085..291253 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1510915933:290106..290487 | TCONS_00009926-exon-sc0000100-1510915933:290106..290487 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1491911889:292782..293059 | TCONS_00009926-exon-sc0000100-1491911889:292782..293059 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1491911889:292056..292332 | TCONS_00009926-exon-sc0000100-1491911889:292056..292332 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1491911889:291085..291253 | TCONS_00009926-exon-sc0000100-1491911889:291085..291253 | Clytia hemisphaerica | exon |
| TCONS_00009926-exon-sc0000100-1491911889:290106..290487 | TCONS_00009926-exon-sc0000100-1491911889:290106..290487 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000100 | supercontig | sc0000100:290106..293059 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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