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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009941 ID=TCONS_00009941|Name=TCONS_00009941|organism=Clytia hemisphaerica|type=transcript|length=2548bpRun BLAST on NCBI protein sequence of TCONS_00009941-protein >TCONS_00009941-protein ID=TCONS_00009941-protein|Name=TCONS_00009941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp MIEENPDVLWLVVVGFIIAFVLAFGIGANDVANSFGTSVGAKVLTLFQACRun BLAST on NCBI transcript from alignment at sc0000100:474289..506302- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009941 ID=TCONS_00009941|Name=TCONS_00009941|organism=Clytia hemisphaerica|type=transcript|length=32014bp|location=Sequence derived from alignment at sc0000100:474289..506302- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000100:474289..506302- >TCONS_00009941 ID=TCONS_00009941|Name=TCONS_00009941|organism=Clytia hemisphaerica|type=CDS|length=1617bp|location=Sequence derived from alignment at sc0000100:474289..506302- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009941 vs. Swiss-Prot (Human)
Match: S20A2 (Sodium-dependent phosphate transporter 2 OS=Homo sapiens GN=SLC20A2 PE=1 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 1.392e-68 Identity = 123/245 (50.20%), Postives = 171/245 (69.80%), Query Frame = 1
Query: 292 DVLWLVVVGFIIAFVLAFGIGANDVANSFGTSVGAKVLTLFQACIIASIFELAGAILIGSKVSDTVRKGIIDVNQFNGSEPLAMAGAFSALTATSIWLIVATFFNLPVSGTHSIVGATIGYALVAIGSKSIGWATFGKIAASWVISPLLSGLISCAIFLGIDRWILKSSSPLKYGLIALPFLLFATIFINLFSIFYSSKEVFGMADFAWYVIFGICIGASLVISIIEAFGVNPWLKKKILAESES 1026
+ LW+V++GFIIAF+LAF +GANDVANSFGT+VG+ V+TL QACI+ASIFE G++L+G+KV +T+RKGIIDVN +N + MAG SA+ +++W ++A+F LP+SGTH IVG+TIG++LVAIG+K + W KI ASW ISPLLSG +S +F+ I +ILK P+ GL ALP ATI IN+FSI Y+ V G+ W + I G +L+ + V PW+++KI + +
Sbjct: 5 EYLWMVILGFIIAFILAFSVGANDVANSFGTAVGSGVVTLRQACILASIFETTGSVLLGAKVGETIRKGIIDVNLYNETVETLMAGEVSAMVGSAVWQLIASFLRLPISGTHCIVGSTIGFSLVAIGTKGVQWMELVKIVASWFISPLLSGFMSGLLFVLIRIFILKKEDPVPNGLRALPVFYAATIAINVFSIMYTGAPVLGLVLPMWAIAL-ISFGVALLFAFFVWLFVCPWMRRKITGKLQK 248 HSP 2 Score: 166.007 bits (419), Expect = 8.353e-43 Identity = 104/159 (65.41%), Postives = 132/159 (83.02%), Query Frame = 1
Query: 1399 LFKYLQILTAAFGAFAHGGNDVSNAIGPVISLWLIYRTGEVQSTAQTPXXXXXXXXXXXXXXXXXXXRRVIKTIGENLSPITPSSGFAIEIGSALTVLLASNLGIPVSTTHCXXXXXXXXXXXXXXEVVDWSLFTNIVISWVVTMPITGGISAMIFAIL 1875
LF +LQ+LTA FG+FAHGGNDVSNAIGP+++LWLIY+ G V A TP+W+L YGGVGI GL VWGRRVI+T+G++L+PITPSSGF IE+ SA TV++ASN+G+PVSTTHCKVGSVV VG +RS++ VDW LF NI ++W VT+P+ G SA + A+L
Sbjct: 486 LFHFLQVLTACFGSFAHGGNDVSNAIGPLVALWLIYKQGGVTQEAATPVWLLFYGGVGICTGLWVWGRRVIQTMGKDLTPITPSSGFTIELASAFTVVIASNIGLPVSTTHCKVGSVVAVGWIRSRKAVDWRLFRNIFVAWFVTVPVAGLFSAAVMALL 644 The following BLAST results are available for this feature:
BLAST of TCONS_00009941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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