|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009943 ID=TCONS_00009943|Name=TCONS_00009943|organism=Clytia hemisphaerica|type=transcript|length=2163bpRun BLAST on NCBI protein sequence of TCONS_00009943-protein >TCONS_00009943-protein ID=TCONS_00009943-protein|Name=TCONS_00009943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp MELFQDPIALSIIGSDDHVLYGCHCDKLKPITKLYYCRHCTKLRCAKCVTRun BLAST on NCBI transcript from alignment at sc0000100:508997..524190- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009943 ID=TCONS_00009943|Name=TCONS_00009943|organism=Clytia hemisphaerica|type=transcript|length=15194bp|location=Sequence derived from alignment at sc0000100:508997..524190- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000100:508997..524190- >TCONS_00009943 ID=TCONS_00009943|Name=TCONS_00009943|organism=Clytia hemisphaerica|type=CDS|length=17388bp|location=Sequence derived from alignment at sc0000100:508997..524190- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009943 vs. Swiss-Prot (Human)
Match: DCTN4 (Dynactin subunit 4 OS=Homo sapiens GN=DCTN4 PE=1 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 3.365e-121 Identity = 194/433 (44.80%), Postives = 275/433 (63.51%), Query Frame = 3
Query: 186 DHVLYGCHCDK--LKPITKLYYCRHCTKLRCAKCVTHEVDSFYCPNCLENMPSTEAKIKKNRCANCFDCPSCGHSLSVRATAVSVGGNPLDESPKTNVKKMHYLNCGFCRWTTRDVGLADQATPSGGWAEPELPFTKKMSSLLEYYKQLAQQDKAEKARQKITSRRRSNMLIM--DRYGYTXXXXXXXXXXXXPNTSILGKTNSASGKEIQAPTIVTTIEQDVEQLPDSFYTEPLCLEEVLTLDQRLKNPALSATKTKELHPKHKHLKVRRSQRCKRCEHNLCKPEFNPSSIKFKIQLVGMQYCPLLQIAKSGNFSQGESTQVVLSLSNPLDSAINVTFMPLNVDDKLNRTQTSDIELPXXXXXXXXXXXXVEFDGIGSSSMSEQFDDDPKVIHARSSNKVSFYANVIPNKESGKVVAAFTLNYSYKLITAPL 1472
D VLY +K P+++LY+CR+C++LR +CV+HEVDS YCP+CLENMPS EAK+KKNRCANCFDCP C H+LS RAT++S D+ KT +KK +YL CGFCRWT+RDVG+AD++ SGGW EPE P T++M+ L+EYY+QLAQ++K E+ R+K+ +RRR+ M + D+YG L + S + L KEI+ E VE LP+ +YT P+ L EV TL QRL P +L+P+HKHL ++RS RC++CEHNL KPEFNP+SIKFKIQLV + Y P ++I N + +QV+L+L+NP+++ +VT D + T+ + +P + +A KDA E+D + + F DDP +I R +NKV + V P +E G+V F + + +K + AP+
Sbjct: 8 DRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLP--DDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKL-ARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDE--VEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAE---PQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPI 432 The following BLAST results are available for this feature:
BLAST of TCONS_00009943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.