TCONS_00009958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009958
Unique NameTCONS_00009958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009958 ID=TCONS_00009958|Name=TCONS_00009958|organism=Clytia hemisphaerica|type=transcript|length=197bp
GCCATCAAAATATTTATCAGCATATTATTTCATGGCCAACTCAAAGAGAA
CGTGTTTATCGTCAGTCTTATATTCACCCCAATTGATACCTGTGTTGTAA
CCACCATAAATCAGTTGACATCGTTGatcattttttttcacattatGCAA
AAACATGATGGAGTTGTTGTTATTGTATGATTGGATGTTGAAAGCTA
Run BLAST on NCBI

transcript from alignment at sc0000100:404874..405070

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009958 ID=TCONS_00009958|Name=TCONS_00009958|organism=Clytia hemisphaerica|type=transcript|length=197bp|location=Sequence derived from alignment at sc0000100:404874..405070 (Clytia hemisphaerica)
TAGCTTTCAACATCCAATCATACAATAACAACAACTCCATCATGTTTTTG
CataatgtgaaaaaaaatgatCAACGATGTCAACTGATTTATGGTGGTTA
CAACACAGGTATCAATTGGGGTGAATATAAGACTGACGATAAACACGTTC
TCTTTGAGTTGGCCATGAAATAATATGCTGATAAATATTTTGATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005588XLOC_005588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009958-exon-sc0000100-1491911889:404874..405070TCONS_00009958-exon-sc0000100-1491911889:404874..405070Clytia hemisphaericaexon
TCONS_00009958-exon-sc0000100-1510915933:404874..405070TCONS_00009958-exon-sc0000100-1510915933:404874..405070Clytia hemisphaericaexon
TCONS_00009958-exon-sc0000100-1575043694:404874..405070TCONS_00009958-exon-sc0000100-1575043694:404874..405070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:404874..405070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	9.3707	0	8.93364	2.09089	0	3.62651	8.79994	1.15695	8.08737	10.7985	21.7013	22.2303	0	1.33665	7.38661	0	0	0	0	0	5.59538	8.3229	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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