TCONS_00009962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009962
Unique NameTCONS_00009962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009962 ID=TCONS_00009962|Name=TCONS_00009962|organism=Clytia hemisphaerica|type=transcript|length=471bp
ttttgaatatggTATAATAAATTAGGAAATATTTACTTAGGAATAAGTTA
GGAAATTCTGGGAAATTACATAATAAATTAACTTGAAAATAATGTGAGAA
TATCTTTGCAAACAAgtttaaactaaaataaaatctattcaaCGACCTGT
CATTGATAATCCAATTTCTGACAAAAGCTGGTACGTTGTCATCTCCATTT
TCATATCATATATTGAAACCTCTGGGTACAAGACATGGTTTAATGTTATA
TAAacgattttattttcaagtagCTTGTATTGGACGAAtccttttctaaa
attttcaactgtTTTTTCCAAATAGTTACAAATCATATAATCAGAATCAG
CTGGTATGAAATGTTTATAAGAGTCAAATATATTTTCGTTTGTATGTTTC
TTTTCCAAGACGCGACATAAAAAGAATGGCTCGTTTACATTATCTGAGGA
GTAGATACCAATGATCTGGCC
Run BLAST on NCBI

protein sequence of TCONS_00009962-protein

>TCONS_00009962-protein ID=TCONS_00009962-protein|Name=TCONS_00009962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
GQIIGIYSSDNVNEPFFLCRVLEKKHTNENIFDSYKHFIPADSDYMICNY
LEKTVENFRKGFVQYKLLENKIVYITLNHVLYPEVSIYDMKMEMTTYQLL
SEIGLSMTGR
Run BLAST on NCBI

transcript from alignment at sc0000100:519960..520430

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009962 ID=TCONS_00009962|Name=TCONS_00009962|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0000100:519960..520430 (Clytia hemisphaerica)
GGCCAGATCATTGGTATCTACTCCTCAGATAATGTAAACGAGCCATTCTT
TTTATGTCGCGTCTTGGAAAAGAAACATACAAACGAAAATATATTTGACT
CTTATAAACATTTCATACCAGCTGATTCTGATTATATGATTTGTAACTAT
TTGGAAAAAacagttgaaaattttagaaaaggaTTCGTCCAATACAAGct
acttgaaaataaaatcgtTTATATAACATTAAACCATGTCTTGTACCCAG
AGGTTTCAATATATGATATGAAAATGGAGATGACAACGTACCAGCTTTTG
TCAGAAATTGGATTATCAATGACAGGTCGttgaatagattttattttagt
ttaaacTTGTTTGCAAAGATATTCTCACATTATTTTCAAGTTAATTTATT
ATGTAATTTCCCAGAATTTCCTAACTTATTCCTAAGTAAATATTTCCTAA
TTTATTATAccatattcaaaa

Coding sequence (CDS) from alignment at sc0000100:519960..520430

>TCONS_00009962 ID=TCONS_00009962|Name=TCONS_00009962|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000100:519960..520430 (Clytia hemisphaerica)
GGCCAGATCATTGGTATCTACTCCTCAGATAATGTAAACGAGCCATTCTT
TTTATGTCGCGTCTTGGAAAAGAAACATACAAACGAAAATATATTTGACT
CTTATAAACATTTCATACCAGCTGATTCTGATTATATGATTTGTAACTAT
TTGGAAAAAacagttgaaaattttagaaaaggaTTCGTCCAATACAAGct
acttgaaaataaaatcgtTTATATAACATTAAACCATGTCTTGTACCCAG
AGGTTTCAATATATGATATGAAAATGGAGATGACAACGTACCAGCTTTTG
TCAGAAATTGGATTATCAATGACAGGTCGttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005592XLOC_005592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009962-exon-sc0000100-1491911889:519960..520430TCONS_00009962-exon-sc0000100-1491911889:519960..520430Clytia hemisphaericaexon
TCONS_00009962-exon-sc0000100-1510915933:519960..520430TCONS_00009962-exon-sc0000100-1510915933:519960..520430Clytia hemisphaericaexon
TCONS_00009962-exon-sc0000100-1575043694:519960..520430TCONS_00009962-exon-sc0000100-1575043694:519960..520430Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009962-proteinTCONS_00009962-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:519960..520430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135411	0.264095	0.15332	0.149999	3.8348	1.98012	2.25321	3.09668	0.700958	1.53659	1.23471	1.7053	0.529375	0.187052	1.00208	0.360231	0.214033	0.520954	0	1.63845	2.00827	0.893327	0.46578	0.905304	0.58154	0.778516	1.68319	0.594474	0.450888	1.77726
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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