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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009968 ID=TCONS_00009968|Name=TCONS_00009968|organism=Clytia hemisphaerica|type=transcript|length=4150bpRun BLAST on NCBI protein sequence of TCONS_00009968-protein >TCONS_00009968-protein ID=TCONS_00009968-protein|Name=TCONS_00009968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp MGVSTVTAGRILDGQLKQQPGEENVLSWEMFPNAAFSKTYNTNQQTPDSARun BLAST on NCBI transcript from alignment at sc0000101:7743..36005+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009968 ID=TCONS_00009968|Name=TCONS_00009968|organism=Clytia hemisphaerica|type=transcript|length=28263bp|location=Sequence derived from alignment at sc0000101:7743..36005+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000101:7743..36005+ >TCONS_00009968 ID=TCONS_00009968|Name=TCONS_00009968|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0000101:7743..36005+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009968 vs. Swiss-Prot (Human)
Match: PPBT (Alkaline phosphatase, tissue-nonspecific isozyme OS=Homo sapiens GN=ALPL PE=1 SV=4) HSP 1 Score: 400.208 bits (1027), Expect = 1.881e-124 Identity = 220/465 (47.31%), Postives = 287/465 (61.72%), Query Frame = 2
Query: 470 WFKDGVETIKQNLKIKPINRK-AKGVILFLGDGMGVSTVTAGRILDGQLKQQPGEENVLSWEMFPNAAFSKTYNTNQQTPDSAGTATAFMTGVKARAGVISVNENVKLANCSDKEGNDVLSLIMIAERYGLSTGVVSTARLTHATPATAYANSPSRNWESNAE-----VSDGDCPDIAKQLIDFPYGDGLEIAFGGGRKHFLRTGDPD---DDDVSKFGKRTDGHNLKQDWL----KTKNHKYVSNRDGLKNLEPNIDNKVLGLFNYDHMDYEYNRNSSKEPSLTEMVEFAIATLQQSPNGFVLLVEAGRIDHGHHASKPVLALHDLVEFNKAVTKAKEIVNQDETLMIVTADHSHVFTLGGYAPRGNPIFAFTGHTA-KDLKGFTSLAYTNGPGGKVNATRHEPTDEQLLDANNYRWQSLVPLSSETHGGEDVGIYSQGPQAHLLRGVVEQNVIFHVMDYALCL 1822
W ET+K L+++ +N AK VI+FLGDGMGVSTVTA RIL GQL PGEE L + FP A SKTYNTN Q PDSAGTATA++ GVKA G + V+ + + C+ +GN+V S++ A+ G S G+V+T R+ HATP+ AYA+S R+W S+ E +S G C DIA QL+ +++ GGGRK+ D + D G R DG +L W + K+ ++ NR L L+P+ + +LGLF M YE NRN+ +PSL+EMV AI L+++P GF LLVE GRIDHGHH K ALH+ VE ++A+ +A + + ++TL +VTADHSHVFT GGY PRGN IF + D K FT++ Y NGPG KV E NNY+ QS VPL ETHGGEDV ++S+GP AHLL GV EQN + HVM YA C+
Sbjct: 29 WRDQAQETLKYALELQKLNTNVAKNVIMFLGDGMGVSTVTAARILKGQLHHNPGEETRLEMDKFPFVALSKTYNTNAQVPDSAGTATAYLCGVKANEGTVGVSAATERSRCNTTQGNEVTSILRWAKDAGKSVGIVTTTRVNHATPSAAYAHSADRDWYSDNEMPPEALSQG-CKDIAYQLMHNI--RDIDVIMGGGRKYMYPKNKTDVEYESDEKARGTRLDGLDLVDTWKSFKPRYKHSHFIWNRTELLTLDPHNVDYLLGLFEPGDMQYELNRNNVTDPSLSEMVVVAIQILRKNPKGFFLLVEGGRIDHGHHEGKAKQALHEAVEMDRAIGQAGSLTSSEDTLTVVTADHSHVFTFGGYTPRGNSIFGLAPMLSDTDKKPFTAILYGNGPGYKVVGGERENVSMVDYAHNNYQAQSAVPLRHETHGGEDVAVFSKGPMAHLLHGVHEQNYVPHVMAYAACI 490 The following BLAST results are available for this feature:
BLAST of TCONS_00009968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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