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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009970 ID=TCONS_00009970|Name=TCONS_00009970|organism=Clytia hemisphaerica|type=transcript|length=2302bp
TGTTGTTTTCCTAGAACCCTTCAAATGTCTTGTGACTTTGTGGTGTATAT
TTCTCGTGTTTTCTTTTCAGAGTGCTATTTTTCTGGACGAGCATCTTTCT
ATAGAAACGTCTTTTAGACGTCTTATAGTCGTTTTTAAGGGTTCTTCTTG
TTTCAATACAAAACAATGGCTCAAGATATCAAAATCTATAACCGTTCCAT
GAAAGAGTTAGACAGTCATTTGGCTTCAGACGTTTTGTCAAGAAACAGTG
AAACAAGAAAGCCAAACCAAGAAGTAAACAGCTGAAAGATGTTATTCaga
tctctaatcctaattatTGCTTTTTATGGCTGCTTTGGGATTGAAGTTAA
ACCAGGCAATGTAAAAGGTTCATATCAATTACCGGGCGGAGATTGGGCGT
GTCCTATTCAACCTGTCGGTCTCAATCGGAGTGCAGATGTTCCAAATAAT
GTGACGATCTGGATTTCTAAATGTGTGGGCGGTTTCATGAAGGGCGGGAT
TACTTATGAAACTTGCACGCTTAAGAAGACCTTGATATTGTTCCAAAATG
ACAACTCAAGGATTGCAATCAATGCTGATGAAGACTTTTTCGATACTGTT
GGTTTGATTCGTTATATTGCAAACAAGGTGTGCATCAGTTGGCGGGATGT
TCAATACCAAGAGAGCGACCGAACAAGAGCAACAGCGGCCGCGTGTAAGA
ACGCCTGTCTCGAAAATTATTATGCTCCGGCGTATACTTTGACCCAATTC
AATGATCAAGGAAAAGCCACAAATTACGAAAGTTACACGTTCGAGAAAAA
GAGCACTTCAGCTGGAAATCGAATTGAAGGAATGAAGATTCCTGCTCTCT
TGTCTTTGTTtatattgttttgtttcttgtaATGACCAGCATGATAGaag
ttagcctggatatccagactgtaaacttgtttttaatttatgaTGTTTCT
GATTTACCGCCTGGTCTTCCTAAATCGATTTGCAGCGCACATGCGcactt
tttcaatttaaatattGCGCAAGCACTTAGGCAGACCAAGCTGTAAAAGA
CAGGAGCAGcagaaataagaaaatgatttaCAGTTGATATCCAGGCTAGA
TAAAAGTATGATATTTTAGGAGAGGTAACAACTCTTTTGATTGACGCCAA
ATATAAAAATCGAAAGAATTAAGTAGCACGTTCTTGTGTCCTTGCACACG
TCTtgtgattttcaatttttttttgcttaatatAATTTTATGATGATTTA
TGAGGATTTTCTTTAttgtttatattatatatactttttttcTACCCCGA
TTTTACGCAATTGATTTgtacaaaatatcaaatttcgATTTATGGCATAT
ATGGCAGGCATGTTTGGTTAATTATTTCTGGATCTAATCGAGGCTCCCCA
TATTAAGGTGTCAAAGTTTTACTGTATTTAGAAATTGTAATTTTGATTAg
tatatgtttttttataagcatataaaaatccgaaaacaggctcagagatg
atTAGGTCGAcaaaatgcttgagggatgcttatatccaaagcaaaaattt
agggaaatactgaaaagcCTTAAGATtccagccaaaatcaggaaaaaaca
tttttcgtaggctcaagtaacgcttgccatatgcttaatttttccccata
tctgatcctagatatgcttacaagtgcaatgcttataaaaaaaacatgta
caggATGTCCCGAAAATTAGTATCGAATGCACGTACTCTATTgtacaggc
ttattacaaaagttAGTTTTCAAAAACATATTAATAAATACCCCTTTTTA
CTATTCCCTTGTCGCACTTCATTGGGCTAAAGATTTACTGTGATGTcatt
gtacagggtgtccctaattaaagtatcgagtttgaacatgcgattgagta
gaaaagtttgtgtgtgttatcgctaaaatataagaacgttctccatcaca
caggcttatcacaaaaggtagttacaacgtataaattaatcgtagtgaca
aagaaaaaagagggcgagcttaaaatacaattttgtgaacacgcacatag
aactttctactcatagttgtgtttcgactcgatactttaattagggacac
cctgtatatatcAAAAAGAACAAAGGACCTAGAATTATGAGCCTTGAGGA
ACCCCAGCATTAACCCGCTTCCACTCCGATGTTTTCCCATTTAACATAAC
TCTTTGATACCTATCAGTTAGAAAGTTTTGTATTAAGGAAAGCAAAGTTA
GAGAAAGGGACTCCAGATTGGTTTAGTCCGCCCATTTGCCTTTGGATCAA
AT Run BLAST on NCBI protein sequence of TCONS_00009970-protein >TCONS_00009970-protein ID=TCONS_00009970-protein|Name=TCONS_00009970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MLFRSLILIIAFYGCFGIEVKPGNVKGSYQLPGGDWACPIQPVGLNRSAD
VPNNVTIWISKCVGGFMKGGITYETCTLKKTLILFQNDNSRIAINADEDF
FDTVGLIRYIANKVCISWRDVQYQESDRTRATAAACKNACLENYYAPAYT
LTQFNDQGKATNYESYTFEKKSTSAGNRIEGMKIPALLSLFILFCFL Run BLAST on NCBI transcript from alignment at sc0000101:50614..54318+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009970 ID=TCONS_00009970|Name=TCONS_00009970|organism=Clytia hemisphaerica|type=transcript|length=3705bp|location=Sequence derived from alignment at sc0000101:50614..54318+ (Clytia hemisphaerica)
TGTTGTTTTCCTAGAACCCTTCAAATGTCTTGTGACTTTGTGGTGTATAT
TTCTCGTGTTTTCTTTTCAGAGTGCTATTTTTCTGGACGAGCATCTTTCT
ATAGAAACGTCTTTTAGACGTCTTATAGTCGTTTTTAAGGGTTCTTCTTG
TTTCAATACAAAACAATGGCTCAAGATATCAAAATCTATAACCGTTCCAT
GAAAGAGTTAGACAGTCATTTGGCTTCAGACGTTTTGTCAAGAAACAGTG
AAACAAGAAAGCCAAACCAAGAAGTAAACAGCTGAAAGATGTTATTCaga
tctctaatcctaattatTGCTTTTTATGGCTGCTTTGGGATTGAAGTTAA
ACCAGGCAATGTAAAAGGTTCATATCAATTACCGGGCGGAGATTGGGCGT
GTCCTATTCAACCTGTCGGTCTCAATCGGAGTGCAGATGTTCCAAATAAT
GTAAGTTTCCAATATTTCTTCAAATGATATTTACACCCGGGCGAAGGGGT
ACTAGGGCTGCGAGCTGACTGGAGATGAGTGCCGCCCGATATTCGACCCT
AAGACCCTTAcagggactaaaaaggagaaaacaaaggaattttaCGACGC
TTGTTTATTGggatcaattttgaccaaagttcGATCTTTCCAggggaaaa
agttgaaattttcctatttctccgacccttaatgggactgaaatttgttt
ttttgatttttccgacccttagtgggactttggagatccaaaaaaggtac
ccttaagggcggtacATACTTTACCCTTCATTTGCCCAAGAACTCTCCCC
CGGGAAATTTAATAATTTGAAAACTAGGTCAAGGTTgcaatgtattttta
aagggcCACTTGAATAATATAACTGTATCAGCTTGTATGAGAGAATAATA
CATAAtgattcaattgattttaaGGTGACGATCTGGATTTCTAAATGTGT
GGGCGGTTTCATGAAGGGCGGGATTACTTATGAAACTTGCACGCTTAAGA
AGACCTTGATATTGTTCCAAAATGACAACTCAAGGATTGCAATCAATGCT
GATGAAGACTTTTTCGATACTGTTGGTTTGATTCGTTATATTGGTAAGTG
TTCAGAAACTGTTATAAGAAAACGAAGATAAGATTGAGTGTTCTTAGCAC
CAAACCACCCTTGTCTTTTGTAGCCTTTTCCAGACGTCGTGTTTTTTTTC
TACGCTGTAACTCCTATTCTACTCTGcaattttttcgaatgtttagaaCC
CAGGTTTTTTTAGcccgattttttgacgtcactttacaCTTTCAATCTTT
TATATTGCTGGTGAGTAGAGTGTTTAGAACATTTTACAAAAAGACGGAAA
TAAGATTGGAAAGAGTCCAAGAGTCCAgctatttagattttttcatcAAC
TCACCCTtctgtaaatgtttttttttcttgcacTTTCCAAcgtttatttt
tattagttatTTCCGcacattaaaggttttattttttataagtgttcccg
ttcccgtttcatatcagacacatatttcatataaggaaagtgtctaccta
ttgttatattatattgatataagtaaaaaaatgtttttcttttcctcttt
ttgaccaatcttgctccacattgtCTTTTGTAGCCTATTCTAGACGTCGC
GGTTTTTCTTTCTACGCAGTAACTTCTATTCCACTCTGCAATATCTTTTG
AATGTCTGGAGCCCAGGTTCTCAGGCTccaaaaattagatttttggaCGT
CGCACTTCACACTTTCAATCTATTATCCATTATTGGTGAGTGTTtagaac
attaaaaaaaaacaaattaagatTGGAGATTCACTGTACCAAATCTTCTC
TGTAAAGTCCAAGAGTAAAGTCTTGCTatttggattttttcatttttcac
ccttctgtaaatgttctttttttgcactttccaacgttttttttatttcc
gtACATTGTAAGCATTCTGTTACCAGTTCTGCAGTACTGACcgctatttt
tcatttttcccgtTTCCTATAGCAAACAAGGTGTGCATCAGTTGGCGGGA
TGTTCAATACCAAGAGAGCGACCGAACAAGAGCAACAGCGGCCGCGTGTA
AGAACGCCTGTCTCGAAAATTATTATGCTCCGGCGTATACTTTGACCCAA
TTCAATGATCAAGGAAAAGCCACAAATTACGAAAGTTACACGTTCGAGAA
AAAGAGCACTTCAGCTGGAAATCGAATTGAAGGAATGAAGATTCCTGCTC
TCTTGTCTTTGTTtatattgttttgtttcttgtaATGACCAGCATGATAG
aagttagcctggatatccagactgtaaacttgtttttaatttatgaTGTT
TCTGATTTACCGCCTGGTCTTCCTAAATCGATTTGCAGCGCACATGCGca
ctttttcaatttaaatattGCGCAAGCACTTAGGCAGACCAAGCTGTAAA
AGACAGGAGCAGcagaaataagaaaatgatttaCAGTTGATATCCAGGCT
AGATAAAAGTATGATATTTTAGGAGAGGTAACAACTCTTTTGATTGACGC
CAAATATAAAAATCGAAAGAATTAAGTAGCACGTTCTTGTGTCCTTGCAC
ACGTCTtgtgattttcaatttttttttgcttaatatAATTTTATGATGAT
TTATGAGGATTTTCTTTAttgtttatattatatatactttttttcTACCC
CGATTTTACGCAATTGATTTgtacaaaatatcaaatttcgATTTATGGCA
TATATGGCAGGCATGTTTGGTTAATTATTTCTGGATCTAATCGAGGCTCC
CCATATTAAGGTGTCAAAGTTTTACTGTATTTAGAAATTGTAATTTTGAT
TAgtatatgtttttttataagcatataaaaatccgaaaacaggctcagag
atgatTAGGTCGAcaaaatgcttgagggatgcttatatccaaagcaaaaa
tttagggaaatactgaaaagcCTTAAGATtccagccaaaatcaggaaaaa
acatttttcgtaggctcaagtaacgcttgccatatgcttaatttttcccc
atatctgatcctagatatgcttacaagtgcaatgcttataaaaaaaacat
gtacaggATGTCCCGAAAATTAGTATCGAATGCACGTACTCTATTgtaca
ggcttattacaaaagttAGTTTTCAAAAACATATTAATAAATACCCCTTT
TTACTATTCCCTTGTCGCACTTCATTGGGCTAAAGATTTACTGTGATGTc
attgtacagggtgtccctaattaaagtatcgagtttgaacatgcgattga
gtagaaaagtttgtgtgtgttatcgctaaaatataagaacgttctccatc
acacaggcttatcacaaaaggtagttacaacgtataaattaatcgtagtg
acaaagaaaaaagagggcgagcttaaaatacaattttgtgaacacgcaca
tagaactttctactcatagttgtgtttcgactcgatactttaattaggga
caccctgtatatatcAAAAAGAACAAAGGACCTAGAATTATGAGCCTTGA
GGAACCCCAGCATTAACCCGCTTCCACTCCGATGTTTTCCCATTTAACAT
AACTCTTTGATACCTATCAGTTAGAAAGTTTTGTATTAAGGAAAGCAAAG
TTAGAGAAAGGGACTCCAGATTGGTTTAGTCCGCCCATTTGCCTTTGGAT
CAAAT Coding sequence (CDS) from alignment at sc0000101:50614..54318+ >TCONS_00009970 ID=TCONS_00009970|Name=TCONS_00009970|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000101:50614..54318+ (Clytia hemisphaerica)
ATGTTATTCagatctctaatcctaattatTGCTTTTTATGGCTGCTTTGG
GATTGAAGTTAAACCAGGCAATGTAAAAGGTTCATATCAATTACCGGGCG
GAGATTGGGCGTGTCCTATTCAACCTGTCGGTCTCAATCGGAGTGCAGAT
GTTCCAAATAATGTGACGATCTGGATTTCTAAATGTGTGGGCGGTTTCAT
GAAGGGCGGGATTACTTATGAAACTTGCACGCTTAAGAAGACCTTGATAT
TGTTCCAAAATGACAACTCAAGGATTGCAATCAATGCTGATGAAGACTTT
TTCGATACTGTTGGTTTGATTCGTTATATTGCAAACAAGGTGTGCATCAG
TTGGCGGGATGTTCAATACCAAGAGAGCGACCGAACAAGAGCAACAGCGG
CCGCGTGTAAGAACGCCTGTCTCGAAAATTATTATGCTCCGGCGTATACT
TTGACCCAATTCAATGATCAAGGAAAAGCCACAAATTACGAAAGTTACAC
GTTCGAGAAAAAGAGCACTTCAGCTGGAAATCGAATTGAAGGAATGAAGA
TTCCTGCTCTCTTGTCTTTGTTtatattgttttgtttcttgtaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009970-exon-sc0000101-1491911889:50614..51063 | TCONS_00009970-exon-sc0000101-1491911889:50614..51063 | Clytia hemisphaerica | exon |
| TCONS_00009970-exon-sc0000101-1510915933:50614..51063 | TCONS_00009970-exon-sc0000101-1510915933:50614..51063 | Clytia hemisphaerica | exon |
| TCONS_00009970-exon-sc0000101-1575043694:50614..51063 | TCONS_00009970-exon-sc0000101-1575043694:50614..51063 | Clytia hemisphaerica | exon |
| TCONS_00009970-exon-sc0000101-1491911889:51538..51706 | TCONS_00009970-exon-sc0000101-1491911889:51538..51706 | Clytia hemisphaerica | exon |
| TCONS_00009970-exon-sc0000101-1510915933:51538..51706 | TCONS_00009970-exon-sc0000101-1510915933:51538..51706 | Clytia hemisphaerica | exon |
| TCONS_00009970-exon-sc0000101-1575043694:51538..51706 | TCONS_00009970-exon-sc0000101-1575043694:51538..51706 | Clytia hemisphaerica | exon |
| TCONS_00009970-exon-sc0000101-1491911889:52636..54318 | TCONS_00009970-exon-sc0000101-1491911889:52636..54318 | Clytia hemisphaerica | exon |
| TCONS_00009970-exon-sc0000101-1510915933:52636..54318 | TCONS_00009970-exon-sc0000101-1510915933:52636..54318 | Clytia hemisphaerica | exon |
| TCONS_00009970-exon-sc0000101-1575043694:52636..54318 | TCONS_00009970-exon-sc0000101-1575043694:52636..54318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000101 | supercontig | sc0000101:50614..54318 + |
Blast
The following BLAST results are available for this feature:
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