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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010000 ID=TCONS_00010000|Name=TCONS_00010000|organism=Clytia hemisphaerica|type=transcript|length=2332bpRun BLAST on NCBI protein sequence of TCONS_00010000-protein >TCONS_00010000-protein ID=TCONS_00010000-protein|Name=TCONS_00010000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp MEAEDSNPFLSDEPSEIDSKNPFDDTGDFMDGGGDLDETPDFDFEASKPTRun BLAST on NCBI transcript from alignment at sc0000101:600743..624878+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010000 ID=TCONS_00010000|Name=TCONS_00010000|organism=Clytia hemisphaerica|type=transcript|length=24136bp|location=Sequence derived from alignment at sc0000101:600743..624878+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000101:600743..624878+ >TCONS_00010000 ID=TCONS_00010000|Name=TCONS_00010000|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000101:600743..624878+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010000 vs. Swiss-Prot (Human)
Match: SNX7 (Sorting nexin-7 OS=Homo sapiens GN=SNX7 PE=1 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 1.196e-74 Identity = 138/379 (36.41%), Postives = 210/379 (55.41%), Query Frame = 1
Query: 436 DSQDLFVKVDSPEKHV---EGYVSYGVITQTTRTEFEKAEYKVRRRYQDFLWLRHKLEESYPTHIIPPLPEKFSFTKNLTDKYDADFLKTRQKALDKFMCRVVDHPVLSFNQNLKTFLSAKAWEMTTARKKAPGAASKVGGSVKNTAAQLM-MKNRDELFTEQNQYNTAFQAKTKSFLTIADMIAQDRFFLLEDSTEYGSAFRLWANSESKLAETLNGVSESIDKSCVNLKSILRIQELRFCEPIREYNLYCDAVKYASKRRDQIQMEQELVTXXXXXXXXXXXXXXSGEAKSFAQFFGKDPEKAKEERLTKLNQQIRDLTAEVETLANNRAKADEDFKADLERWNASKKSDIKALLMDLADKHIKFYESNIAAWQGSL 1560
D +DLF+ VD PE HV E +++Y +IT+T+R EF+ +E++VRRRYQDFLWL+ KLEE++PT IIPPLPEKF K + ++++ DF++TR+KAL KF+ R+ DHP L+FN++ K FL+A+AWE+++ +K+ PG S++G +V+ A+ + +KNR E F E N + F K I+ I ++ ++ EYG LW+ SE L +TL V+ ID+ C + + + EY LY + + KRRDQIQ E + +K E LT L E+ L + A+ KAD ERW + ++DIK D+A+++I +YE +A W+ L
Sbjct: 28 DLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKF-IVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSRMGQTVRAVASSMRGVKNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYGPIHILWSASEEDLVDTLKDVASCIDRCCKATEKRMSGLSEALLPVVHEYVLYSEMLMGVMKRRDQIQAELD----------------------------------SKVEVLTYKKADTDLLPEEIGKLEDKVECANNALKADWERWKQNMQNDIKLAFTDMAEENIHYYEQCLATWESFL 371 The following BLAST results are available for this feature:
BLAST of TCONS_00010000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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