TCONS_00010006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010006
Unique NameTCONS_00010006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010006 ID=TCONS_00010006|Name=TCONS_00010006|organism=Clytia hemisphaerica|type=transcript|length=2947bp
attttttccatccccattgaattttatggattgaaaacaatggaattcaa
accCCCAGTCATaagaaatatgggaatatcaatccccatcgacttttgat
ccgttatttttacccccactggctgaaaaaaaccCTACCGGGTCAAGATC
ATATGAACTTTGCGCCCCGAAATGACGTAATGATCACTAGATAATCAGGA
ATGgaccattttatatccatacagggagTGGGATgaacgaacatttccag
agtttttctgcaaattttgtcatttccaGAGGGTATCCATATATTTTCAA
GAATCACTTTTGGCTTGtcaaggttcgtccaccccctgcaTGGGAAGTAA
ATGGAACAGCCGACATAGACAGATATTTTCAAGAATCACTGTTGGCTTGA
CAAGgctcgtccaccccctgtatggaaaatAAATGGAACAACCCAGTATT
GGTTGCACCAACCACGCTTTAGTAACTTTACCCAGAATAAATCTTATGTT
AATAAAATTATCTTATAATTTAGTGCGTTTAAAATTTACATTTCAGTTTT
ACAGATATCGTCATCATTGTCGTTAAAAAGAAGGAATGACTGTTAGTTAC
ACAAACTAGGTCAATAGATACTACAATTTTAATATCGTTAAATTCATTGA
TCAAAGCTAGTTGTTTCAGACAGAAATGGTCTTCAGGGCCGGGCGGAAGC
GGGGAGGCTGGCGGTGGTTgaagcctccccacttttgagcaaaatagACA
TTGTTCTCCAATTCATATGGCGAATTCTATCTCATTTAGATCCTTTAGCC
CATctacttttacggttgttctaCCGGGCCTGGTCTTTAGAcaagattct
tcaaattttgcagaaatTTTGTTGGTCCTTTTGTACCTCGCTGAGACTGA
AGAACTTTGTATATCAGCTGAACCCTATATGTACAAATCCAGAGAATAAA
AGGCCGGCAAGTAGATGGAAACCAAACTAGTATATTTTAAAGAATTACAG
GATTTAGATATttgggaaaattgaaaaatggctATTTCGAAACAAACAAA
TATACCGACGATACCGATCGAGTTTAAATAGATCGGAAGAAAATATATTC
CGTATTCTAATAGACAATTCTAATCATCACTTTGTGAGTGTCTATTAAAG
TTCTAGCGTTCTAAAGAACGATTTATAATCGTCTGTATGATTGCATATTA
AAGAGATTTCTCATGTTTTGTAAAGTTACGTAACTTCCCAcgttatggaa
gcaaacgttcgattttctTAAGGGATTGCAACTACATATTTACataattc
gaacgtttgcttccataatggcggaagtttacgtaacttaacaaaacatg
aaGAACCTCTATTCTGATATTATGACAGACAATTGCAAGGTCTTCCACGG
ACCcgccaacagctgattggttgaaagtgacgtaatgactaattttatgt
cattttcaaccaatcagctgttgggtccgtgatgttatggcagaagacat
tgcaatggtgcatatcatgaatagcttcTTTATTATCCTATCTTTTTATC
TTATGTACCATGCTCATAGCCAGGTTACAGCTTTGTATTCAATTCACCAC
TTGAGGATAATAAACTCGTTTTCTCCGTTACTTTCTCGTGGTGATGATGG
TGGTGATGATGGCTGTGGTGGTCCAGCAGTTTATGAATACTGACATTCGA
AAAGACTTTTTTCAAACCACTGAAATGCGATAGAACATTATGAGAAGTTG
CAGAGCGCGGTGGTTGTTGCTGCATCTCCACACTTAAACTCGCGTCCAGT
AGGAAAGACGTGGATTGTGATTTACGGATTTCCCGCCTCAGCACGTCCAG
CCCTGGGTTGAACGTCTCGTACGATTTGTGATGGTTGATTTTCTCTAACT
GTGACATACTGGAAAAGGAAGCTCTTCGCGGTTGTAAACGATCAATCAGG
CGCTGTCGTTCTCCTTTATGTAACGTTCCGCGGCGACTTCCGGGTTCTCC
ACCATCCGGATCATCGAAAACAGACGGTTGATGAACAGCAACCGGAAGAC
TTGGTAGACTCGCCAATCGAGGGCGGAAGGGTTCTTGTTCGGGCGGTGTC
TGACCTCTCTTCCACTGATCTCGATGTAAACTATCCAGAAAATGATCTTT
ATGTTGCTGTCGAGCATGCTCAGGGCTGTTCAGTTTGGGATTGAACAGAA
TGATGTATACTTTGTAAGCATACATGATAAAAGTCACTGCTAACGTACAA
ATGAAGTTCTGGAATAAGAACGCAATACTGTTGCTGTACGGATCCAGGCT
AAAGAATAATGGAACATAGGCTACCCAGACTACAATAACGGTGAACATGG
TCAAGCTGATGTATTGCGCTTCATTGTAGTTTTCCGGTAACTTACGCGCC
CGGAATGCGTAATAGCCGGACACGATAACCAAGATGAAAATATATAACAT
GACAATCCAGAAAATGACTGTCTGATAATAATCACAtttcaaataataaa
tcaaTTTGCTCTTATAGATGTCTGTTTCCACTGCTGGTTGGAAGTTCCAA
TTCCACAACAACACTGCGATGAGTTCGAAAACAACCAACACGTAAATGAA
GAGGATTTGATAGTTGGTGTGTAAAAAGTGCGATACTTTGGTGAAACGGT
TCGAAAAAACGCGAATCAGGCGATACGTCTTGACAAGAATGATCGCAACT
ACTGTCGTAAACAAGAATCCGAAGATAAGTGTCCGGAATAAACAAAACAG
TGGAGATAGCGGAAAAAAGTAGAGCAACGGTAGACAGAATAACAGCATCA
ATGATAATAATTGGATAATCGAGATTTCACGACTCGATGATTTGACTACG
GTATGTTTGATTACTACTGGCTACTTCGTATGAAGCTTCACAGGGAACAC
ATTTCTCTTGGTTGATCGTCGAACTAATCGTGTCCGCTCCACAGCta
Run BLAST on NCBI

transcript from alignment at sc0000101:153654..156731-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010006 ID=TCONS_00010006|Name=TCONS_00010006|organism=Clytia hemisphaerica|type=transcript|length=3078bp|location=Sequence derived from alignment at sc0000101:153654..156731- (Clytia hemisphaerica)
ATTTTTTCCATCCCCATTGAATTTTATGGATTGAAAACAATGGAATTCAA
ACCCCCAGTCATAAGAAATATGGGAATATCAATCCCCATCGACTTTTGAT
CCGTTATTTTTACCCCCACTGGCTGAAAAAAACCCTACCGGGTCAAGATC
ATATGAACTTTGCGCCCCGAAATGACGTAATGATCACTAGATAATCAGGA
ATGGACCATTTTATATCCATACAGGGAGTGGGATGAACGAACATTTCCAG
AGTTTTTCTGCAAATTTTGTCATTTCCAGAGGGTATCCATATATTTTCAA
GAATCACTTTTGGCTTGTCAAGGTTCGTCCACCCCCTGCATGGGAAGTAA
ATGGAACAGCCGACATAGACAGATATTTTCAAGAATCACTGTTGGCTTGA
CAAGGCTCGTCCACCCCCTGTATGGAAAATAAATGGAACAACCCAGTATT
GGTTGCACCAACCACGCTTTAGTAACTTTACCCAGAATAAATCTTATGTT
AATAAAATTATCTTATAATTTAGTGCGTTTAAAATTTACATTTCAGTTTT
ACAGATATCGTCATCATTGTCGTTAAAAAGAAGGAATGACTGTTAGTTAC
ACAAACTAGGTCAATAGATACTACAATTTTAATATCGTTAAATTCATTGA
TCAAAGCTAGTTGTTTCAGACAGAAATGGTCTTCAGGGCCGGGCGGAAGC
GGGGAGGCTGGCGGTGGTTGAAGCCTCCCCACTTTTGAGCAAAATAGACA
TTGTTCTCCAATTCATATGGCGAATTCTATCTCATTTAGATCCTTTAGCC
CATCTACTTTTACGGTTGTTCTACCGGGCCTGGTCTTTAGACAAGATTCT
TCAAATTTTGCAGAAATTTTGTTGGTCCTTTTGTACCTCGCTGAGACTGA
AGAACTTTGTATATCAGCTGAACCCTATATGTACAAATCCAGAGAATAAA
AGGCCGGCAAGTAGATGGAAACCAAACTAGTATATTTTAAAGAATTACAG
GATTTAGATATTTGGGAAAATTGAAAAATGGCTATTTCGAAACAAACAAA
TATACCGACGATACCGATCGAGTTTAAATAGATCGGAAGAAAATATATTC
CGTATTCTAATAGACAATTCTAATCATCACTTTGTGAGTGTCTATTAAAG
TTCTAGCGTTCTAAAGAACGATTTATAATCGTCTGTATGATTGCATATTA
AAGAGATTTCTCATGTTTTGTAAAGTTACGTAACTTCCCACGTTATGGAA
GCAAACGTTCGATTTTCTTAAGGGATTGCAACTACATATTTACATAATTC
GAACGTTTGCTTCCATAATGGCGGAAGTTTACGTAACTTAACAAAACATG
AAGAACCTCTATTCTGATATTATGACAGACAATTGCAAGGTCTTCCACGG
ACCCGCCAACAGCTGATTGGTTGAAAGTGACGTAATGACTAATTTTATGT
CATTTTCAACCAATCAGCTGTTGGGTCCGTGATGTTATGGCAGAAGACAT
TGCAATGGTGCATATCATGAATAGCTTCTTTATTATCCTATCTTTTTATC
TTATGTACCATGCTCATAGCCAGGTTACAGCTTTGTATTCAATTCACCAC
TTGAGGATAATAAACTCGTTTTCTCCGTTACTTTCTCGTGGTGATGATGG
TGGTGATGATGGCTGTGGTGGTCCAGCAGTTTATGAATACTGACATTCGA
AAAGACTTTTTTCAAACCACTGAAATGCGATAGAACATTATGAGAAGTTG
CAGAGCGCGGTGGTTGTTGCTGCATCTCCACACTTAAACTCGCGTCCAGT
AGGAAAGACGTGGATTGTGATTTACGGATTTCCCGCCTCAGCACGTCCAG
CCCTGGGTTGAACGTCTCGTACGATTTGTGATGGTTGATTTTCTCTAACT
GTGACATACTGGAAAAGGAAGCTCTTCGCGGTTGTAAACGATCAATCAGG
CGCTGTCGTTCTCCTTTATGTAACGTTCCGCGGCGACTTCCGGGTTCTCC
ACCATCCGGATCATCGAAAACAGACGGTTGATGAACAGCAACCGGAAGAC
TTGGTAGACTCGCCAATCGAGGGCGGAAGGGTTCTTGTTCGGGCGGTGTC
TGACCTCTCTTCCACTGATCTCGATGTAAACTATCCAGAAAATGATCTTT
ATGTTGCTGTCGAGCATGCTCAGGGCTGTTCAGTTTGGGATTGAACAGAA
TGATGTATACTTTGTAAGCATACATGATAAAAGTCACTGCTAACGTACAA
ATGAAGTTCTGGAATAAGAACGCAATACTGTTGCTGTACGGATCCAGGCT
AAAGAATAATGGAACATAGGCTACCCAGACTACAATAACGGTGAACATGG
TCAAGCTGATGTATTGCGCTTCATTGTAGTTTTCCGGTAACTTACGCGCC
CGGAATGCGTAATAGCCGGACACGATAACCAAGATGAAAATATATAACAT
GACAATCCAGAAAATGACTGTCTGATAATAATCACATTTCAAATAATAAA
TCAATTTGCTCTTATAGATGTCTGTTTCCACTGCTGGTTGGAAGTTCCAA
TTCCACAACAACACTGCGATGAGTTCGAAAACAACCAACACGTAAATGAA
GAGGATTTGATAGTTGGTGTGTAAAAAGTGCGATACTTTGGTGAAACGGT
TCGAAAAAACGCGAATCAGGCGATACGTCTTGACAAGAATGATCGCAACT
ACTGTCGTAAACAAGAATCCGAAGATAAGTGTCCGGAATAAACAAAACAG
TGGAGATAGCGGAAAAAAGTAGAGCAACGGTAGACAGAATAACAGCATCA
ATGATAATAATTGGATAATCGAGATTTCACGACTCGATGATTTGACTACG
GGTGTATGCCAGTGTCGCACGAACACCAGGATAACGAAAAGCACGATCAA
AACTCCAACGATGCACGACGCGATCAACAACAAACCGATATAATTGTCTA
ACTTGATGCGGATTTCACGCAGTTTGATACAGTATGTTTGATTACTACTG
GCTACTTCGTATGAAGCTTCACAGGGAACACATTTCTCTTGGTTGATCGT
CGAACTAATCGTGTCCGCTCCACAGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005614XLOC_005614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010006-exon-sc0000101-1575043694:153881..156731TCONS_00010006-exon-sc0000101-1575043694:153881..156731Clytia hemisphaericaexon
TCONS_00010006-exon-sc0000101-1575043694:153654..153749TCONS_00010006-exon-sc0000101-1575043694:153654..153749Clytia hemisphaericaexon
TCONS_00010006-exon-sc0000101-1510915933:153881..156731TCONS_00010006-exon-sc0000101-1510915933:153881..156731Clytia hemisphaericaexon
TCONS_00010006-exon-sc0000101-1510915933:153654..153749TCONS_00010006-exon-sc0000101-1510915933:153654..153749Clytia hemisphaericaexon
TCONS_00010006-exon-sc0000101-1491911889:153881..156731TCONS_00010006-exon-sc0000101-1491911889:153881..156731Clytia hemisphaericaexon
TCONS_00010006-exon-sc0000101-1491911889:153654..153749TCONS_00010006-exon-sc0000101-1491911889:153654..153749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:153654..156731 -
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR017978GPCR_3_C
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00010006 vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 2.911e-20
Identity = 58/216 (26.85%), Postives = 105/216 (48.61%), Query Frame = -3 
Query: 2106 RTLIFGFLFTTVVAIILVKTYRLIRVFSNRFTKVSH--FLHTNYQILFIYVLVVFELIAVLLWNWNFQPAVETDIYKSKLIYYLKCDYYQTVIFWIVMLYIFILVIVSGYYAFRARKLPENYNEAQYISLTMFTVIVVWVAYVPLFFSLDPYSNSIAFLFQNFICTLAVTFIMYAY----KVYIILFNPKLNSPEHARQQHKDHFLDSLHRDQWKR 2735
            R   FG  F   ++ ILVKT R++ VF  +     H  +   N Q L +++    +++  ++W +   P+   +      I ++ C     +    ++ Y  +L  +  ++AF++RKLPEN+NEA++I+ +M    +VW++++P + S   Y   ++ +    I  LA +F + A     K+YIILF P  N+ E  R     H      R   +R
Sbjct:  680 RQPAFGISFVLCISCILVKTNRVLLVFEAKIPTSFHRKWWGLNLQFLLVFLCTFMQIVICVIWLYTAPPSSYRNQELEDEIIFITCHEGSLMALGFLIGYTCLLAAICFFFAFKSRKLPENFNEAKFITFSMLIFFIVWISFIPAYAST--YGKFVSAV--EVIAILAASFGLLACIFFNKIYIILFKPSRNTIEEVRCSTAAHAFKVAARATLRR 891
The following BLAST results are available for this feature:
BLAST of TCONS_00010006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASR2.911e-2026.85Extracellular calcium-sensing receptor OS=Homo sap... [more]
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