TCONS_00010038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010038
Unique NameTCONS_00010038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010038 ID=TCONS_00010038|Name=TCONS_00010038|organism=Clytia hemisphaerica|type=transcript|length=2443bp
TGAAATCACGTGAAAAGGCAAGACCTTTCACAtgatcaaaacaaataaaa
ttttgaaacccaaaaatatcaCATACTTTTACAccaagtttcaaaattca
tcaaTCATAATTTAACTTCACAGTATATTACTTGGAAACATGGCTCTTCA
AGCTCGTGGAAAGAATATCTTTATCCTGGTTTTATGTTTTGCTTTCTTTC
TGAATAATGTTTCTGGAGTTGAGATTATTGTCACAGATTGTCAGACTGTG
GAATTGGAATTTCATGTTACCATGTTCACACTGAAACTCAGTGAAAACAT
CGATCAACCGATCAATTTGAAACTAGAGAGTGACGAGAAAAGCATAGCAT
TCCCCTTGAAAAGTAATTTCACATTTCTACCAGAACATGGTACCATGCCA
CAGATAGTTTTTGTTTATGGGAACGAAGTTGGTTCAACACACATCAATGT
TACGGATGGAAGAAATGTCTCCCTTCTACCGGACGGTACACATCCAATTG
CAAATAAAGAAGTGCAAGTGAGAGTCGTACATTCTCTGACGTTACAATCT
ATCAACGTTGTGATTGGTTGGGTATATTTcttggcatggtcaatctccTT
CTACCCACAAACAATCGAAAATTTCCGTCGTAGAAGTGTTGTtggattga
attttgattttctttgctACAATCTTACGGGCTTCTTGGCTTACTCGTTC
TTCAATGTTGGTCTCTTTTATGTCAAATCCGTCCAAGACGAATATTTTGC
GCAATACGGCGGTTCGGTGATTCCCGTTCAACCGAACGACGTTTTCTTCG
CATTACACGCTGTCGTCCTCACCATTGTCACGATAACACAATGCTTCTTC
TTCGATAGAGGTGATCAACGCATTTCGAACATTTGTAAAGGATTGACGTC
TGTAGCCTGGTTGTTTGCTGGTATTTCCCTTGTGGTCACACTCACTGGAA
AAATTAATTGGTACACCTATCTTAACTTCTTCTCCTATATCAAGCTTGGA
ATCACACTTATAAAGTACATCCCGCAGGCGGTGATGAACTACCGACGTCA
ATCGACTGTTGGATGGAGTATCGGAAATGTTTTGTTGGACTTCACTGGTG
GTTCGTTCAGCTTAATCCAAATGTTCTTCCTCGCCTATAATAACAATGAA
TGGAATTCAATCTTCGGAGATTTCACAAAGTTCGGTCTCGGATTTTTCTC
CATTTTATTCGACATTCTATTTATGACTCAACATTACATATTGTACCGAC
ATTCAAGAGAATACACCCCGATTGAAGACAACGAAAAACAACATGACGAT
CATAAAGATGCAAATGTGAACAAACCCGTATCGGCAATTTGATTTAGGAC
CACATTTACATTGTCAATAACATTTCTTATTTGGATTGGTAGTTAGATAG
CAGATAATACACGCGGCATGTTTTGTTCAAGTTGAAGATTTAAAGGTTAG
CATGCAACATGGTTCACTTTGGGGGAAATCGAGATTGTCTAAATGCACAG
AGTagaaattcttgatatgcgtaagtcaagatgacgtcatattttttaac
ggaagcacccaaaaaagccggtttttgacctctgtgtttctatttttggt
aacagagagaggtcaaatcccggcttttttagggtgttaccgctagaaaa
atgacttacgcatatcaagaatgaGACCACTTGGATCCAAAAATTAGACA
ATAGTTTGTTGACAAGATCCCATCCATGTTGACAGATCAGACAGCACACA
ACATCCaattaacgttcaaataacgttagatgaacgttttgATCGTACAA
ACAATGTTGTGCACGCCAGATGTGGATTAATTAAGGATTTCGagattttg
agtttttaaggTCACATTAGGGCTAGCATGGATATCCAAgtagtgaattt
ttttctttattatactTTTCCTGCTCTTCCTGCTTCTATAACTTGTTCTA
TCTAGATGCTTGTAAACACAGTGTCGGCGAATACTTAACTTTGCACAATA
TTTGAATTAATATAAGTCTGCCTTCTGAAGTTGGAATGCAAATCAATTAG
GGAAGACCAGGCGGTAAACCAGAAGcattaaagataaaaaaaatagtGTT
TACAGCCTGAATATCCAGACTTGAAAATATGACTATTATCATATTGTTAT
TTGGAATTTAGCGAGAAGATGTGATATGTCAAACCCCTTTTTCATGCTTT
ACTTTAAGTCCCAATTTATGTTGTCTTCCAATCTATAGGTTTTTTATGca
taatcagtttaaagtttatttaaattctgctgttcaatttgtttttattt
ttttgtcaaatatactgggaaatttggtattttaaagaatgaaatttttt
tatgttttgtatcACACTGTAGTTAAtatatatttacaattttttataaa
tttctagAAGTAGAAGCGATAAAGAAAAAGTTAGGAACATTCA
Run BLAST on NCBI

transcript from alignment at sc0000101:586239..600557-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010038 ID=TCONS_00010038|Name=TCONS_00010038|organism=Clytia hemisphaerica|type=transcript|length=14319bp|location=Sequence derived from alignment at sc0000101:586239..600557- (Clytia hemisphaerica)
TGAAATCACGTGAAAAGGCAAGACCTTTCACATGATCAAAACAAATAAAA
TTTTGAAACCCAAAAATATCACATACTTTTACACCAAGTTTCAAAATTCA
TCAATCATAATTTAACTTCACAGTATATTACTTGGAAACATGGCTCTTCA
AGCTCGTGGAAAGAATATCTTTATCCTGGTTTTATGTTTTGCTTTCTTTC
TGAATAATGTTTCTGGAGGTAAGAAAAAATTGTTCTCATATTTTTATAAA
ATTCAGTCTTGTGTCTGTCTTGTGAAGATCTTTGCCTTAATGATATAGAA
AGGAGGCTTGCCTCTATACTAACAAACAGATTAAACAATAGAATTTCTGT
TTGATTCCAACAATCGCAGCAGCTCACAAGTGAATGAACCTTCACCCAGC
AGGTCAACCCATAATGCCATGTGAGCAGGAGGGGAATAGGGTTAGGGTAC
CGTGAGATTGGGTAACTTGCATCAGTGGAGGCAAACATGCATAGCCCTTA
AATGAATAACCTGTCTGGTCATTAAAATACAAAGTTAAATCAAAACAAAA
ATGGTAAAGTAGTCTAATGTCTAAAGTCTATATGCGATCAGAGCTGTGTG
TAGTTCAACGTGTAGTTCATTTGTTTTGAAATTTTGCTGCTTTGATTGGT
CAGTCATTTGAGGTCATTTGATGGCTGTGCAAGTTCCCCTCCACTGATGC
AAGTTACCCGACTCACGATAGTCAGTCCAAGGTGCTAAAGGCAAAGGGGT
GCTCCATGAAAGCGTCTATAGTTGTGAAAATGGGCCTTAAAGCCTATTGC
CTGCAACTTAACGAAATAGATTGATAGAATAGTGTTGATGCCGAAGAAAC
TTATCTCAGGAAATCAGGAAATGGACTCAATCGCTACGATAAAACAATAT
ATTGAAACGATAGGCTAGAACATAAAAATACAAAACTACTTTAGAAAAAT
GTACAAAACTATAGAAAATCTCTAATCCAGTAAGACCAGCAGGTACTGTA
GAACAGAAAAAAGGCACTCAGAAAAACAAATGATGTGAATGAATGATTTC
TACTGACAACTCCTAGTTTTTATATTAATTACTAGATAATTACCGTATGT
ATAAATTAATTACTCTAATAAAAGAAAATGCGTAAAATAAACGGAACGTA
ATTCTCAAGACAAAATGAATGACACAAAAAACAAAGGAAACCAAGAACAA
CAGAAACGAGACAAAAGAGACACGGAACAAAAAACAAAAGACCAAAAGAT
GACGTAAACCAAGCACAAGAGCAGCCAGGTTTCCCTGCTGTGCCTCGGCA
GTTACAAACAGGATAAATTTATCTTGTCCCTAGGTAACAGCTGTGCACGA
TACCATTTATGTGGTAAAAAACCATTACTCAATGACTCCACACGATTGTA
GTCTGATTGTAGATCAATTTGCACATGTTTAATTTTAATTTGTACTGCTC
TGTATGTTGGTCTAATGTAGACATGTAATTCCAACACCCTTCCCCTTCCC
GGGGGGAGCCGCCCAACTTTCAACCCTTGGAAATTTTGTGAATTTTACGA
CCCTTACTGGGACAAATTTGACCAATTTCGACCAATTTTCAATCTTTCTG
ACAAAAAAATATTGAAATTTAAAAAGTTGAAATTTACCTATTTCTCCTAT
CCTTAGTGGGACTGAAATTTGATTTTTCCAAACCTTAGCAGGACGTTGGA
AATCCAAAAAAGGTACCCTTAAGGGTGGCACATAGCGTACCCTCCATTTG
CCTAAGTACCCCCGACCCTTTGTAGAGATAAGATCAAAAGGAAGGTCAAA
ATCACTGAACGAAAAAATAGNAAAAAGTTGAAATTTACCTATTTCTCCTA
CCCTTAGTGGGACTGAAATTTGAAAAAATATATGATCTTCTCTCTGATTG
CTATAATAATTAGTGATCAGCAATTCTGACTTTTCTATTATTCCCAGGTT
TAAAGAAGGGTTTCAGAATAAGATGTGGGATGTTGCCATTAGACCAACTT
ATGGTGTTAGGACTAGGGAAAGGTCTATTTGATTTCTTAATATTAACATT
GAGAGACATTATAATTGTCAGGCAATCTTTCTTTCGTTTTTCTAATGTAT
TTCCTGGTATAATAGACCTTTTGCTATTCATTATATACCATTTGGGCTCC
ATAAATTAGAGGCAAAAACATTACATTATAACACTCCAAAAAATTAGCAA
TGGATGAATTTCTACCTGTTTGGTTTTTATCTTACTGTATATCTTAAAAA
TGTGTCTAAACAGCGTGTCCAAAAGTATACATGCAATTAAAAGGTTACAA
AATGTGCCTATTTACTGTGTTTGTATTTTGTAGCTTAATATATACCTAGA
CACTTGTATTGCAAAATCAATGAAGATGAAAATTAAGTGCGAAGAAATCA
ATACGCATTTTTAGTAGCCTGCCAACTGGCTACCTGAACACACTTTTATA
TTAGGGTAAACCATATAAAAATCCCTTTGAATAGTATATCCACTGCATTA
ACCCTGGTGGAAAGAGTATGAATCTGACATTAGATTATAGGCTACATTCG
ATTCACAAATTTCCAAAAGTTATTGCCTAAATTCTAAAACATTACTTTTC
AAAAAAGGCGAAAAATGAGGGTATCAACTGTATCAAATCATCAAAGAAAG
CACTTCTATTATCAATTTATTAACGATCAAGTTTTTCTATGTTGTCCTTT
ATAAGGTAGACTACACAATAGACAGTAGCCTACCTTCAAGGTGCCTTTTG
CAGGAATTGTTAATCTTGTTGATTCGTGCCTTGGAAAAAATGGAAATACA
TTTCCTGATAGTAGGGGGAATTTTGTTCGATTTTTTGGAATCGCTTGACT
GTTTTGTTAGAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGGG
GAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGTCCGAAAAAAAATTGGAAACATAGTAATTTCGATTCCCCTA
CCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTCTAACAAAACAGTCG
AGTGATTTTACAAAATTCCCTCTACNGAAAAATGAGGGTATCAACTGTAT
CAAATCATCAAAGAAAGCACTTCTATTATCAATTTATTAACGATCAAGTT
TTTCTATGTTGTCCTTTATAAGGTAGACTACACAATAGACAGTAGCCTAC
CTTCAAGGTGCCTTTTGCAGGAATTGTTAATCTTGTTGATTCGTGCCTTG
GAAAAAATGGAAATACATTTCCTGATGAATAAAAATACATTTTTGTGTCT
TTGTCTTACAATAAATTTAATACCCTCATTTTTCGCGTTTTTTCGACTTT
TTTTAAAAGTAATTTTTTAGCATTTAGACCATAACTTTTTATCTAGTTGA
CTAAAAATGACCCCTCAAATTTTAAGTTTATCCTTCCTTTTTCCAATGCA
AAAGGATTGATGCTTTCAAAGTTCATAGAACTCGAGAAAATTCACTTCAA
AGAGGGGGACTTTTTTCTGGGACATCCAGGGACACCTGGTATTATTCACT
ACTAATGTATAGCTGACAACATAGTTATTTCAGGATAATCAAAGTAAGTA
AGTGAATTGAATTCTGCTTTTCATTTCAGCAGTTGAGATTATTGTCACAG
ATTGTCAGACTGTGGAATTGGAATTTCATGTTACCATGTTCACACTGAAA
CTCAGGTAAGAAACAATATGATAAGAACAAGTAGGCTAAACAGTGTCCTG
GAAATACCTGGAAAGTCCTGAAAATGCAACCTTTCCCAATGTCTTGGGAA
ATCCTGGAAGTTGAAAACTTTTGAATCATCTTTATTTCATACAAGTAATT
ATTTCGGAAAATCTTCTCAATTTTGGTGCTTGATGCAAATTATTTTATAC
TAACGGTTCAAATTGTTCTGTGTGTCAGCTACTCTTATAATTTCATTCAT
TCAATCCAATACATTAATTTCTTCCAGCCTAAAAGATAAGTGTAATCTAT
ATTATCCTGAAAAGTCCTAGAATTCGGTTTAAGTACCCTAAAAATCTTGG
AAAAAGGGTTTGAAAAGTCCTGGTAAATCACAATAATACCCTGGAAAATC
CTTGAAAGCCCTGGAATTCAAGTTTCATTTAAGGCTGGCAACCTTAAACT
AAAGATTTCAAAAACAAAAAATGTTCCATTAAGAATAAAGATATTGCCAA
ATAGATAAATAAATACTTTCCAAATAGAAATATCTAATTAAATAAAAGTG
GAAATGCTTAAATTGCTTAAATGCTTAAAGGGATAATCAGATGGTCTGAG
ATATTTTGCCTGCAGATAGCTTCTAGGATTTTAGGAAAAACCTCTAAATT
TTTCGGTGTATTTATTTTTATAACTCAAGTTATGCCAATTTGAAATCTCG
AAAAATGGGACTTTTCAGGGACTTTTCACACTTTTTTCTATTGTTTTCAA
GCAAAAGTTCAAAAGTGGTATAACTTTAGTTAGGAAAATAAGTACACCGA
AAAATTTAGAATTTTTTTCTAAAATCCTAGAAGCTATCTATAGGCAAAAT
ATCTCAAACCATCTGATTATCCCTTTAAATTCTCGCCCGGATCCCAATAT
ATTTCGACCATGCCATGATAGTATAGTGTCCAGAAACGTTTGCTGAAAGT
AAGGCTTGTAAGATTAAGAAACTAATAACTTTTTAAGCAATCAAAAATTA
TTTGCTTTCCTTGGGTGTTTTTGTCTCCTTCTGTTTTCGATTAATAGCCT
ATTTGTATCTGCACTTAGGACGGCAGAGAGACTGAAACGATTGTTGGAAC
AACCTGCAGCTCTGACCTGCAAAATCAAGGACAGAGAGGGTGCTGATTTA
CTGTCGTCCTTAGTCAGTATTCTAAACAAATCAAAAGTTTCTCCTTTGCG
GAAAACACAAAAAACTCGGCAATTTCTTGTTAGGTTCTTTTTGTATGTTT
TATTGACATTTAGCATCAGGTCTTAAAAGTTGAATTTCCTTTTTACATAT
GGACTTAAAAAACAATCTTTTGTGTTTCAGTGAAAATATCAACCACCAAG
CCATTCTATTGGTTAGAAGTGACGTAAAAATCGAACGTAACCAATAGGAT
GGCTGAGTTTCCTTTTTACACAAGAACTTGAAAAACAATATTTTACCTTT
CAGTGAAAACATCGATCAACCGATCAATTTGAAACTAGAGAGTGACGAGA
AAAGCATAGCATTCCCCTTGAAAAGTAATGTAAGTATAAAGATTATGCTA
CAAAAAAATTGTTTCCCTTCTTATATTCCCTATTACGTTCTTGTTTTACT
TTCTGAGGACATTTCTAGGTTTAAAACTCAAAAAGTTAAGAACATTCAAA
GGCTGATGTATGACAAGTGATTTCAATCATTTCGTTTTATACACAAGCAT
GGTTGAAATAAATTGAGAATTTTGGTTGTTCAAGATTTAAAGTTCCGGCG
AGAAAGTCGATTTTGGTCTCTTTAATTTAATCGAATATTTCAATTTGGGA
GAGGTTCAATTTCATGTTCAATGTTTTATAGATAAACGAGGTAGGTCCAT
AAAAAGTATCACTTGTTTCTTTCTTTAGTTCACATTTCTACCAGAACATG
GTACCATGCCACAGATAGTTTTTGTTTATGGGAACGAAGTTGGTTCAACA
CACATCAATGTTACGGATGGAAGAAATGTCTCCCTTCTACCGGACGGTAC
ACATCCAATTGCAAAGTACGTAAGTTCTAAGATTCTAAGAAATCTGACCG
AAGACTGCCTGAAACGGCACGAAACTCCAAGTATCGGAAAATAAATTTGT
CTCTATTCTTGACTGATAAATTCTAAGATAAATTCATTTACTTTCACTGA
GGCTGTTGGCTGAAAAGGCTGACGAAACGTTTCAAGTTTTGGCAATCGAG
GCTTTATGTTCTTATATAGTTTGTTCTTAAGTTGTTAAAAATGAGACTTG
TAGATTTAAAGTTTCATTTTTATTTGGCTGATGATTGTCGTCCATAAAAA
TGGCGTGAAACTTTATTTACCAAACACTACAATTCTCATTCTTAACAACT
AGATATCATCGAGCACTTTTGGAACTAAGAAGAACTAGAATTATGGTATA
TATAGTTTGTTCTTATAGAAAACGTGTATTTTTTCCCCTTGTTCTTATAA
AAAAGTGTACCTTAAGGGAAGAAATTTTGGTGGGAAGAAAATTTGACGGA
TTTGGTGGATTTGTCTGAAATCCGCCAAATATTAAGTTCCCGTCAAGTTA
AATTTTTTCGGTCATTCGCCAAATTAAATTCCTGCCAAATTTAATTTGTT
TCTTTTTATGTCCGATTTTTCACAATTTTTCCCCGATATCAATGATTTCA
GATTTAAAAATCCGTCATCCACCAAATTAAATTCCCGCCAAAATTTCTTC
CCTTGTGCTTATAAGCAACGTGTATTTTCCCCATGCTCTTATAAAAAACA
TGTAATTTTTCCTTCGCAGTAAAGAAGTGCAAGTGAGAGTCGTACATTCT
CTGACGTTACAATCTATCAACGTTGTGATTGGTTGGGTATATTTCTTGGC
ATGGTCAATCTCCTTCTACCCACAAACAATCGAAAATTTCCGTCGTAGAA
GGTTTGCTAATCATTTCTTTTTCTTTTTTCATTCATACACATTTGCCGAA
TTGTTATTCATGCTTTTTGACTTTTTGGTTTTAATGTTTGGGTGTTTCTA
TTTAGTTTCATAAAATTGTATGTTGCAAAACTAAACAAATAAAAAAAGAA
TTATGAAAAAAGCACTTCCGTTTCTTGAGTTATTTTGATTTGAAATTTCT
TTTTTATAAACAATAGAATTACAAACATGGAAACGAGGCCGGGCTGTATG
TTTCAATTTTTATAAGGGATTTCACCGTGAACAAAAACAGTTATAAAAGT
TGATAGAAAAAAGCTTTTGAGCTCAAATCTTCAGCATGCACTTGTCCTTA
TAGGAGGAATACAAATATATAGTTTTCAATATGGTTTGAAGACCTTCGAA
AAATACCAAACAATTCGGGAAAGGTGTATAGCAAACCTTTGAGAAATAAA
TTTCGCGAAGTGGAATTTCAGACATTTCGCCCAAAATTCAACAAATGTGG
TGTTAGTTAGTGTGCTATTCTTCAATTCACGACCGCTGGGGGGGGGGGGG
GNNNNNGCCCCCCCCCCCCCCCCCCCCATATTCAATTTTTTTCCGGAAAA
GCCCATTTCTCTTTTTCTTTTCATCCGACTCTCTGAATTACAGAAAGATT
CGAATTACAGATGGTATTTCATACGAATTTCCAGCTGATCGGACCCATAT
TTTAGTTCGAATTACAGAAAAATTCGGCAGTGAGGGAGTCTATCCCCTTT
TCTTTTTGCGCTAGACCTGGGAGATCGAATGCTGAGGTGGAGCAGCACAC
CTACTCTCAGCTCCCAGTAACTTACCGCCTAGATCAGATTACCCAATCTA
AGCTACTCATCCGCTGAGTTGGCGGTGACGGGGGATCGAACCTACAATCC
TTGGATTGTAAGGCGAATGCTCTCCCGACTAAGCTACCCGGCCACGATTG
ATATATGTAAAATTATATATCGATATATGTAAAATTAGTAAATATGTGAA
CGAGAAGATCCAATCTTTTACTTTGTCGACTTTCTTTCAGTGTTGTTGGA
TTGAATTTTGATTTTCTTTGCTACAATCTTACGGGCTTCTTGGCTTACTC
GTTCTTCAATGTTGGTCTCTTTTATGTCAAATCCGTCCAAGTAAGTACCG
TTATTGATACGTTTGTTTCAACGTTCACCTAACTTTCATGGCGTCCATAT
TACGTAGATATATCAGTTAGATGAACGTTGAAACAACGTTGTGTGACGCT
TGGTGATGAAGTACCGTATTAGGCAAATTCAGGACCCGCTCGCTTCGCTG
CAAAATGACGCTTTTAGGCACAAAAATCAAAGATGGCGCATTTTCACTTT
CGTTTTCGAGGATGCTCAAGGACAAAAGAGGAACTGATTTCACGCATTAA
AACATATCTCAAATACCCAAAGTTTACCCAAAAAACTGAAATTGAGAACA
AAACTCCAGTTTTATTAATAGCCTGATTAAGTCAAATGAAGTGCCCCACA
TCATGGCTATAACTTTGGCTATGATCTAAAAATCTTATGTCTTATGGACA
CACAAATTAGACCTGCTGTTCTTTTATTTTGAAAATATATCCCTGTAAAA
GTCTACTGTGACTGTCCCGTCGGTGGTAGTGCCTATTATACTGTCACGTG
TATTGTACTGTGTTATATTTGAAACATGTTTCCCAGACTGGTGAAACAAG
GCAAGGTGGATCAGTTCCTGAGTATGTTAAAATGAGCTAATCTAAAGCTT
AAATCTGAAGAAGGAAAAAGCTATCAGTGCAGGCTGTCCCAGATAATTCT
AATTTTAAACAAAATATAAATAATGAATACTATCATTAAAATTTGATACA
GTACGAACATGTTTATTCTTATTCGTGTTTGGTTTTAATTAGGTCTGCTC
ATATTTTGATTTGTGTTAAAATTTGTTCATAAAAAAACTTATAAATACAA
ATAGTGACGTATAAAATTGTTAAAAATGTTGCCTCATTCTTTCAGTCTTT
TGGCACAATCAGTGGTCGGGTTTCCCAGTGGTCACGTGAGATTTATTGTA
TGCCACAAAATATTTGCCAAACACAAGTGAGAATATCAACACGGTTCATT
TGCCAAATGTAATTTAAAAATTTCCATTTTCGAGCACAACCAATATAATG
TTCTACATGAATACACCTGTGTTGAGGCAATATTAAAATTTCTTTGATTA
TCAGTTTTTGAGAATTGATCGTTCTCTTGATTTTGACGTTCTGGTTCCAA
ATCAATTCTATTATTAAGTACCGTTTATCCAATTATTACCAAATGGTTGC
ATAGTTGTCAAGGATGTTCCCATTACAAATGACATAAAATCAAAATGCAA
CGAATGATGACAAATTGTTGTGGTTGCGCCATATATACTGTGTTTCCCAT
CCAAATTGTTTGGGTGTCGTAATTTTTCAAAACATTGATTATATGGAGAA
ACACATGACTCCATAGTCCATAAGCATTTGAAATCCCTCGACTGTAATTC
CACAGAGAAGTTTAAAGGTCTTTGGTTTATTAATCAGGTCTTCCTAAGTG
AAGAAGCTTCTTTAAAGATAGATGAATAATGATGCCCTGTCAGATCAGCC
TGCTGTAGCTTTATAATATACAAGGACTTGTATTTTTGTTCCTCAATCAA
CTCCAAAAGTTCATGGTTTTCTGAATTGCGATCAACATGTTCAGTAGTTG
GCTTGTCTTGCAGTCTTGAGTTCAAGTTTTTCATACTTTTTCACAAACTC
CACTCTGGTCCACTCCACAACACAAAATAAATAAATGTTCATGTTTCCAA
TTCGTAGGTCATTCACCAGTCATATACAAACTAATTTTTGTATATATGGA
TTGAGTTTTCTTCGATAAAGACAGTCTATATATTTATTAACACTGCATTT
ATTTTGGTCCTGACGTTGTTGAAGCAAAGTGATGAACTACAATTTACATC
TTCCATTTTCAACAGTTTTGCAGCCTTTTCCACCTAGAAAACTTAAACAA
ATATGGCTGCCGCTGAATTTTGTCCCTACAAACGCCGTTTTGCAGCGAAG
CGAGCGGCTCCTGAATTTGGCTAATAAGAGTGGCAAGAATGTTCTTTACT
TTTTGTCACTTTAATTTTTTTGACTCCTCTTTGCCTAGAATATCCTTTAT
CATGCTAAATCATGGGGGAAAAGTTGTGACCTCCCCTAACTTCAGGTAGA
TAGCCACAGAAAAGGGAGCTTTTGAGTCGCCTTTGACTTTTAAGTCGTAA
AACTGGACTATAATCTCAAACTTATTTCCTCTGAAGCTTCCCTTCCAAAC
TATAGGAACGCATTCAAATTTAAATCAAACACATCAAACTATCCCTTCTC
TTTCCACGCCGTAGGACGAATATTTTGCGCAATACGGCGGTTCGGTGATT
CCCGTTCAACCGAACGACGTTTTCTTCGCATTACACGCTGTCGTCCTCAC
CATTGTCACGATAACACAATGCTTCTTCTTCGATGTAAGTCAAACTTTTT
TACTTAAAGAAAAACCAAAATATAATAACCACATTCTTTTTCATCGTTCA
ACACACAATTTTTCTACTTCAGGTTTACAAATTTTCGCGGGCGAAAAGTT
TTGCGACGCCGTAAAATCGTGAATTTTTACGACATAAACTTTTGCGAATG
CAAGGAAAAATTGTTTCACGAATCAATACGAATCACAAGAACAATAGTTT
AGAGGAACATAAATACGGGTTGTAATTTTTGTCTTTTGACTTATGAGGCT
TAAACAGGCTAAAAAGTGCAATAAGTCTTACATTTTAACATTCGTGGAAA
AGCCCAAAACTCGTGCGAGAATTGCGAAACTTTATAAGCCTAAAGTGTTA
CTCTCGGGTACCTAATAGCCGGGGGGATTGGAAAAACTCTCAAAACTTAA
TAAGTTGGGGGTGGAATAAAAATGTCCTGGGTGGAAAATTTTTGAAAAGG
AGGCTAATATAGGAGAATTAGGACAAAAGAGGGGAACTTTCAAAAACATT
TTCCCAAAAATTAATAAGCGAAGGGGGGGGGGCTGGAATAAGAATGTCCT
GGGTGGAAAATTTTCGAAAAATTAACTAGCGGGGGGGATGGCTATTAGGC
ATTGAGTTTAAAGCCCGAAGGGCTAGAGTTCAATCTCTAACCTTTCTCAG
GCAAGAAAAAGTGAAGCCTTAAAAAATACGCCGTAATTTGGACGTCAGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGGCGAGCCGCTCAAGGCCGCGCAACTTTGGTAGGATTTGTTG
GCTTCAAATCCTACCAAAGAGATTGACTTCTAGCCCTTCGGGCTTATACT
TCATTGCTATTAGGTACCAGAGAGTAGTTTTTATCACAGATATTATATGC
CTTCACACACTAGATAGGCTAGTTGCATTGCTCACGTAATTTCCACCGGA
ACACTCACAACAAGATTTTCTCTTCACAGAGAGGTGATCAACGCATTTCG
AACATTTGTAAAGGATTGACGTCTGTAGCCTGGTTGTTTGCTGGTATTTC
CCTTGTGGTCACACTCACTGGAAAAATTAATTGGTACACCTATCTTAACT
TCTTCTCCTATATCAAGCTTGGAATCACACTTATAAAGTACATCCCGCAG
GTAAGCGAGTGAAAAACATGACAAATTCTCCTAATACCCAGAGCCACTTA
CACCACTTTTTGATTTTATAGATGGACGTAGGTACAACCGTTAGCGCTAT
CAGAATCATCATAAAGCGAACCAATGGACTTACTTACTTTAGTTACTTAA
ATATAAGCTTTAAAAAAGATTTTAAAAGACTATTAGAATATACATTTTTT
AGAATTTCCATTTCCTTAGCTACAATCATGGTTGAAATATATTGAGAATT
CCGATTATTTTAACGTTTTTCAAGATTTAAAGTTCCGGTGAGAAAGTCGA
TTTTGGGCTATCTCTTTAATTTAATCGAATATTTCAATTTGGGAGAGGTT
AGCAGACTTCCAGGCTATATTCTGAGCCTTATTGGACTATTTTTGAACTT
TTGGATCCTCGGATCCTAAGGTAAGATGTCTTAAGTCTAGTGTTAAAACT
CAGAGTTAAAACTCTACTCTTCGAACCTACTATATAGCACTTACAAATCG
ATTGATTTATTCAAAAATTCCTGCTGAATTTCCCTTTTTTCTCAAATATT
ATGACTTATATGAAAGTTTGGTGCCAATTCCGAATTGTGTGTGCAAAATG
CTTTGTATAAGCATTACTTTTCTTTGGTAGGCGGTGATGAACTACCGACG
TCAATCGACTGTTGGATGGAGTATCGGAAATGTTTTGTTGGACTTCACTG
GTGGTTCGTTCAGCTTAATCCAAATGTTCTTCCTCGCCTATAATAACAGT
AAGTTTGATAGATATCTTTAGGGTGGGTTTTGTTTCATAAGACATGTAAT
GATCGAAAGGAATCATGGGTAATCAGGACTGATTGCTCCCTTCATAATGG
TATTCTGTTTGTCTGAAATTTTGAATGTTTGGTATTTCAGTCTCAAGTGG
TGGAGATTTTTGTAAAATTCATAAAATTTAATCTTTTTGGTTTTCACAAA
CTTTCTCATCCTTTTTTTCAGATGAATGGAATTCAATCTTCGGAGATTTC
ACAAAGTTCGGTCTCGGATTTTTCTCCATTTTATTCGACATTCTATTTAT
GACTCAACATTACATATTGTACCGACATTCAAGAGAATACACCCCGATTG
AAGACAACGAAAAACAACATGACGATCATAAAGATGCAAATGTGAACAAA
CCCGTATCGGCAATTTGATTTAGGACCACATTTACATTGTCAATAACATT
TCTTATTTGGATTGGTAGTTAGATAGCAGATAATACACGCGGCATGTTTT
GTTCAAGTTGAAGATTTAAAGGTTAGCATGCAACATGGTTCACTTTGGGG
GAAATCGAGATTGTCTAAATGCACAGAGTAGAAATTCTTGATATGCGTAA
GTCAAGATGACGTCATATTTTTTAACGGAAGCACCCAAAAAAGCCGGTTT
TTGACCTCTGTGTTTCTATTTTTGGTAACAGAGAGAGGTCAAATCCCGGC
TTTTTTAGGGTGTTACCGCTAGAAAAATGACTTACGCATATCAAGAATGA
GACCACTTGGATCCAAAAATTAGACAATAGTTTGTTGACAAGATCCCATC
CATGTTGACAGATCAGACAGCACACAACATCCAATTAACGTTCAAATAAC
GTTAGATGAACGTTTTGATCGTACAAACAATGTTGTGCACGCCAGATGTG
GATTAATTAAGGATTTCGAGATTTTGAGTTTTTAAGGTCACATTAGGGCT
AGCATGGATATCCAAGTAGTGAATTTTTTTCTTTATTATACTTTTCCTGC
TCTTCCTGCTTCTATAACTTGTTCTATCTAGATGCTTGTAAACACAGTGT
CGGCGAATACTTAACTTTGCACAATATTTGAATTAATATAAGTCTGCCTT
CTGAAGTTGGAATGCAAATCAATTAGGGAAGACCAGGCGGTAAACCAGAA
GCATTAAAGATAAAAAAAATAGTGTTTACAGCCTGAATATCCAGACTTGA
AAATATGACTATTATCATATTGTTATTTGGAATTTAGCGAGAAGATGTGA
TATGTCAAACCCCTTTTTCATGCTTTACTTTAAGTCCCAATTTATGTTGT
CTTCCAATCTATAGGTTTTTTATGCATAATCAGTTTAAAGTTTATTTAAA
TTCTGCTGTTCAATTTGTTTTTATTTTTTTGTCAAATATACTGGGAAATT
TGGTATTTTAAAGAATGAAATTTTTTTATGTTTTGTATCACACTGTAGTT
AATATATATTTACAATTTTTTATAAATTTCTAGAAGTAGAAGCGATAAAG
AAAAAGTTAGGAACATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005626XLOC_005626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010038-exon-sc0000101-1575043694:600340..600557TCONS_00010038-exon-sc0000101-1575043694:600340..600557Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1575043694:596353..596425TCONS_00010038-exon-sc0000101-1575043694:596353..596425Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1575043694:594829..594904TCONS_00010038-exon-sc0000101-1575043694:594829..594904Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1575043694:594343..594479TCONS_00010038-exon-sc0000101-1575043694:594343..594479Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1575043694:593457..593588TCONS_00010038-exon-sc0000101-1575043694:593457..593588Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1575043694:592318..592417TCONS_00010038-exon-sc0000101-1575043694:592318..592417Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1575043694:589974..590093TCONS_00010038-exon-sc0000101-1575043694:589974..590093Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1575043694:588508..588678TCONS_00010038-exon-sc0000101-1575043694:588508..588678Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1575043694:587760..587877TCONS_00010038-exon-sc0000101-1575043694:587760..587877Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1575043694:586239..587536TCONS_00010038-exon-sc0000101-1575043694:586239..587536Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:600340..600557TCONS_00010038-exon-sc0000101-1510915933:600340..600557Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:596353..596425TCONS_00010038-exon-sc0000101-1510915933:596353..596425Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:594829..594904TCONS_00010038-exon-sc0000101-1510915933:594829..594904Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:594343..594479TCONS_00010038-exon-sc0000101-1510915933:594343..594479Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:593457..593588TCONS_00010038-exon-sc0000101-1510915933:593457..593588Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:592318..592417TCONS_00010038-exon-sc0000101-1510915933:592318..592417Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:589974..590093TCONS_00010038-exon-sc0000101-1510915933:589974..590093Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:588508..588678TCONS_00010038-exon-sc0000101-1510915933:588508..588678Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:587760..587877TCONS_00010038-exon-sc0000101-1510915933:587760..587877Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1510915933:586239..587536TCONS_00010038-exon-sc0000101-1510915933:586239..587536Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:600340..600557TCONS_00010038-exon-sc0000101-1491911889:600340..600557Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:596353..596425TCONS_00010038-exon-sc0000101-1491911889:596353..596425Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:594829..594904TCONS_00010038-exon-sc0000101-1491911889:594829..594904Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:594343..594479TCONS_00010038-exon-sc0000101-1491911889:594343..594479Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:593457..593588TCONS_00010038-exon-sc0000101-1491911889:593457..593588Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:592318..592417TCONS_00010038-exon-sc0000101-1491911889:592318..592417Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:589974..590093TCONS_00010038-exon-sc0000101-1491911889:589974..590093Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:588508..588678TCONS_00010038-exon-sc0000101-1491911889:588508..588678Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:587760..587877TCONS_00010038-exon-sc0000101-1491911889:587760..587877Clytia hemisphaericaexon
TCONS_00010038-exon-sc0000101-1491911889:586239..587536TCONS_00010038-exon-sc0000101-1491911889:586239..587536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:586239..600557 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.774369	1.96938e-06	5.56617e-05	3.41953e-10	4.65027	3.78462	0.796116	0.0475236	1.84177	1.95582	3.71517	0.563984	2.09509	4.20314	1.60364	3.99066	1.33165e-05	5.10143	8.15284	0.00262158	3.47891	1.41181	5.06772	3.24558	0.20218	6.02441	0	0	2.6706	5.5087
Blast
[Close]
BLAST of TCONS_00010038 vs. Swiss-Prot (Human)
Match: CTNS (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 2.494e-92
Identity = 141/253 (55.73%), Postives = 185/253 (73.12%), Query Frame = 2 
Query:  506 KEVQVRVVHSLTLQSINVVIGWVYFLAWSISFYPQTIENFRRRSVVGLNFDFLCYNLTGFLAYSFFNVGLFYVKSVQDEYFAQYGGSVIPVQPNDVFFALHAVVLTIVTITQCFFFDRGDQRISNICKGLTSVAWLFAGISLVVTLTGKINWYTYLNFFSYIKLGITLIKYIPQAVMNYRRQSTVGWSIGNVLLDFTGGSFSLIQMFFLAYNNNEWNSIFGDFTKFGLGFFSILFDILFMTQHYILYRHSREY 1264
              ++  V+ S  +  IN VIGW+YF+AWSISFYPQ I N+RR+SV+GL+FDF+  NLTGF+AYS FN+GL +V  +++++  +Y   V PV  NDVFF+LHAVVLT++ I QC  ++RG QR+S    G   +AWLFA ++++V   G   W  +L  FSYIKL +TL+KY PQA MN+  +ST GWSIGNVLLDFTGGSFSL+QMF  +YNN++W  IFGD TKFGLG FSI+FD++F  QH+ LYR    Y
Sbjct:  111 PRIRFLVIRSSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNGVNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLYRKRPGY 363
The following BLAST results are available for this feature:
BLAST of TCONS_00010038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTNS2.494e-9255.73Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
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