TCONS_00010041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010041
Unique NameTCONS_00010041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010041 ID=TCONS_00010041|Name=TCONS_00010041|organism=Clytia hemisphaerica|type=transcript|length=982bp
AATGAATGtaaggaaaaaaaataacatgaaGTTAATTTTGCaatgtaata
ttttcaaatctaaTACTGACAAATCTAAAAATATTGATATctaaaatgta
tataaaaaacCTGTTTATAAAACCCTACCTTTAAGAAAATGACGCACAAG
ctgcaaaaaaataacaaaacccAAGGAGTCTATAGATTCTCATTTGAACA
TTGCCATCTTATTGTTGATGTCACCTTTGAAACATTTCTCCGAAGCCATA
AACTCCTTGATTTCtggaacattttcaaaatttctcatgaaatttttcaa
attatcataTACATCAAAGatattatttgaaaacaatcgatgttGATCTA
AGAGCTCGTACATAATGAAGTCCACAAAGGTTAATTTGTCTCCTGCAAAC
CATTTGTGAGTAACCCCAAGGAAGCGGTCAAACATTCCGAGAACATTTTT
GACACTTTCAAGATACTGCtctgatttttctttgaaattagaTGCATTTG
AGCCATACACAAGCCGTGTGAAACCATTTCGGAAATCCATGGCTTGATTC
TCAATCATATCCATACAgacattttgtttttctgtttcaCCAACTAGACC
AAATTTGCGTCCCAAATAACGCATGATGGCATTACTCTGTGTGATCTTGA
CATCATCGTCAAGTAGGTATGGTAGGTTAGGGAAATCTAATCCAAAAGAT
TGCTTGACATTTGTCCAACAAGATCGGTCGTAATCTGGTGCATCACCACA
CTCATAATGGCGATCCTCAAAATCTGCTTTAGCATACCCAAGAACCATTC
TTGCTGGTTGGGCAAGCCCTCTAATTTTCCAATACGCAATAACAATAGGT
GccatgtttttagatttttcttaaTAATTTGACAAAGTTAAAATTAATGT
AATTGTCAATAAACATTCAGATTTCAGtcaattattaaaatttttaaact
ttgcaTATCTTCAGGCTTTTATAGGAATAGAA
Run BLAST on NCBI

protein sequence of TCONS_00010041-protein

>TCONS_00010041-protein ID=TCONS_00010041-protein|Name=TCONS_00010041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MAPIVIAYWKIRGLAQPARMVLGYAKADFEDRHYECGDAPDYDRSCWTNV
KQSFGLDFPNLPYLLDDDVKITQSNAIMRYLGRKFGLVGETEKQNVCMDM
IENQAMDFRNGFTRLVYGSNASNFKEKSEQYLESVKNVLGMFDRFLGVTH
KWFAGDKLTFVDFIMYELLDQHRLFSNNIFDVYDNLKNFMRNFENVPEIK
EFMASEKCFKGDINNKMAMFK
Run BLAST on NCBI

transcript from alignment at sc0000101:103577..104558

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010041 ID=TCONS_00010041|Name=TCONS_00010041|organism=Clytia hemisphaerica|type=transcript|length=982bp|location=Sequence derived from alignment at sc0000101:103577..104558 (Clytia hemisphaerica)
TTCTATTCCTATAAAAGCCTGAAGATAtgcaaagtttaaaaattttaata
attgaCTGAAATCTGAATGTTTATTGACAATTACATTAATTTTAACTTTG
TCAAATTAttaagaaaaatctaaaaacatggCACCTATTGTTATTGCGTA
TTGGAAAATTAGAGGGCTTGCCCAACCAGCAAGAATGGTTCTTGGGTATG
CTAAAGCAGATTTTGAGGATCGCCATTATGAGTGTGGTGATGCACCAGAT
TACGACCGATCTTGTTGGACAAATGTCAAGCAATCTTTTGGATTAGATTT
CCCTAACCTACCATACCTACTTGACGATGATGTCAAGATCACACAGAGTA
ATGCCATCATGCGTTATTTGGGACGCAAATTTGGTCTAGTTGGtgaaaca
gaaaaacaaaatgtcTGTATGGATATGATTGAGAATCAAGCCATGGATTT
CCGAAATGGTTTCACACGGCTTGTGTATGGCTCAAATGCAtctaatttca
aagaaaaatcagaGCAGTATCTTGAAAGTGTCAAAAATGTTCTCGGAATG
TTTGACCGCTTCCTTGGGGTTACTCACAAATGGTTTGCAGGAGACAAATT
AACCTTTGTGGACTTCATTATGTACGAGCTCTTAGATCaacatcgattgt
tttcaaataatatCTTTGATGTAtatgataatttgaaaaatttcatgaga
aattttgaaaatgttccaGAAATCAAGGAGTTTATGGCTTCGGAGAAATG
TTTCAAAGGTGACATCAACAATAAGATGGCAATGTTCAAATGAGAATCTA
TAGACTCCTTgggttttgttatttttttgcagCTTGTGCGTCATTTTCTT
AAAGGTAGGGTTTTATAAACAGgttttttatatacattttagATATCAAT
ATTTTTAGATTTGTCAGTAttagatttgaaaatattacattGCAAAATTA
ACttcatgttattttttttccttaCATTCATT

Coding sequence (CDS) from alignment at sc0000101:103577..104558

>TCONS_00010041 ID=TCONS_00010041|Name=TCONS_00010041|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000101:103577..104558 (Clytia hemisphaerica)
atggCACCTATTGTTATTGCGTATTGGAAAATTAGAGGGCTTGCCCAACC
AGCAAGAATGGTTCTTGGGTATGCTAAAGCAGATTTTGAGGATCGCCATT
ATGAGTGTGGTGATGCACCAGATTACGACCGATCTTGTTGGACAAATGTC
AAGCAATCTTTTGGATTAGATTTCCCTAACCTACCATACCTACTTGACGA
TGATGTCAAGATCACACAGAGTAATGCCATCATGCGTTATTTGGGACGCA
AATTTGGTCTAGTTGGtgaaacagaaaaacaaaatgtcTGTATGGATATG
ATTGAGAATCAAGCCATGGATTTCCGAAATGGTTTCACACGGCTTGTGTA
TGGCTCAAATGCAtctaatttcaaagaaaaatcagaGCAGTATCTTGAAA
GTGTCAAAAATGTTCTCGGAATGTTTGACCGCTTCCTTGGGGTTACTCAC
AAATGGTTTGCAGGAGACAAATTAACCTTTGTGGACTTCATTATGTACGA
GCTCTTAGATCaacatcgattgttttcaaataatatCTTTGATGTAtatg
ataatttgaaaaatttcatgagaaattttgaaaatgttccaGAAATCAAG
GAGTTTATGGCTTCGGAGAAATGTTTCAAAGGTGACATCAACAATAAGAT
GGCAATGTTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005629XLOC_005629Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010041-proteinTCONS_00010041-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010041-exon-sc0000101-1491911889:103577..104558TCONS_00010041-exon-sc0000101-1491911889:103577..104558Clytia hemisphaericaexon
TCONS_00010041-exon-sc0000101-1510915933:103577..104558TCONS_00010041-exon-sc0000101-1510915933:103577..104558Clytia hemisphaericaexon
TCONS_00010041-exon-sc0000101-1575043694:103577..104558TCONS_00010041-exon-sc0000101-1575043694:103577..104558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:103577..104558 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
73.9387	73.3998	22.7091	17.5909	58.4275	39.812	81.1343	87.3919	99.1648	88.3391	106.762	80.3902	69.0455	67.9956	111.256	126.582	109.805	97.4322	25.1749	25.2716	47.4813	43.1809	80.1984	76.3088	54.0073	62.0533	86.0291	55.6114	86.0396	68.7688
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003081GST_mu
IPR004045Glutathione_S-Trfase_N
IPR004046GST_C
IPR010987Glutathione-S-Trfase_C-like
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004364glutathione transferase activity
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0004364 glutathione transferase activity
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00010041 vs. Swiss-Prot (Human)
Match: GSTM3 (Glutathione S-transferase Mu 3 OS=Homo sapiens GN=GSTM3 PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 4.116e-69
Identity = 108/219 (49.32%), Postives = 143/219 (65.30%), Query Frame = -2 
Query:  196 APIVIAYWKIRGLAQPARMVLGYAKADFEDRHYECGDAPDYDRSCWTNVKQSFGLDFPNLPYLLDDDVKITQSNAIMRYLGRKFGLVGETEKQNVCMDMIENQAMDFRNGFTRLVYGSNASNFKEKSEQYLESVKNVLGMFDRFLGVTHKWFAGDKLTFVDFIMYELLDQHRLFSNNIFDVYDNLKNFMRNFENVPEIKEFMASEKCFKGDINNKMAMF 852
            + +V+ YW IRGLA   R++L +    +E++ Y CG+APDYDRS W +VK    LDFPNLPYLLD   KITQSNAI+RY+ RK  + GETE++ + +D+IENQ MDFR    RL Y S+    K    QYLE +   L  F  FLG    WFAG+KLTFVDF+ Y++LDQ+R+F     D + NLK FM  FE + +I  ++ S++  K  INNKMA +
Sbjct:    5 SSMVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSNAILRYIARKHNMCGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLK---PQYLEELPGQLKQFSMFLG-KFSWFAGEKLTFVDFLTYDILDQNRIFDPKCLDEFPNLKAFMCRFEALEKIAAYLQSDQFCKMPINNKMAQW 219
The following BLAST results are available for this feature:
BLAST of TCONS_00010041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSTM34.116e-6949.32Glutathione S-transferase Mu 3 OS=Homo sapiens GN=... [more]
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