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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010045 ID=TCONS_00010045|Name=TCONS_00010045|organism=Clytia hemisphaerica|type=transcript|length=3223bp
TGCCTGTACAAGGCTAAACCAAAAATGTATTttatcataaaaaagtttca
tagCTATAGTATATCAAGATTATGTACACTGCAAAggaaaatagaaagaa
aataactagtctaaaatgttaagaaaatgaaaaaagtctaaaatctAACA
GAAGCTTTGCCTAATTCAGATAGAGAACGAACGACACATACTCATGAATA
GTATGAATATGATAAGGACGGGTGAAAAGTTAGAGGGGTATGCTCGATAT
GCAGAAGGCCAATTATATGGTCTACAATTGTCTTGGGAGTGAGAAATAGG
CTTTGTTCtagatctgaaattttcaatcaaattgctTTGTTACGTAAAAA
AATTGTGGTACTCAAGCTTtcttcacatgcacgtaaaattttacgtaaTA
CCTTACGGTAAGtcgttcgtaaggctgtcttttgggaatttccccgacat
tatgtAGATTTTTTGTTAGttaagagggtcttacgtgacttttccctccg
ataaaaactttttgaacgtaagcaaactctacataaggccttaaaacact
acgtaagcttagggaaattccccacccttcaatttcaaaattttacgtac
atgtgaaaaaggCTTTAAGCAGGTTTATCAGCGTTGGAGGTTTTTGTAAC
GTGAAAGAGTTGAAAACGTGTTCGTAGACGAGAATTAAAATCACGAATAA
AATAGGTTAAACAATTCACGAAAGTCCAAATCTATTTCTTATTCATTGAT
AACAGTAGAGTCTATCATTCATACTCTCGTCCTGGTATTACATTTCCATC
AATGAAAGACACAGTGTAATCAACAAAAATAGAGCATATTCTAAATCTCA
AGTTCATCATCTTAAATTCAATCCATGAGAGGGGTAGACACGTTCATCAT
CTCTTATCACGCCTCGTGTAAGCCGCTTTATTTGATTCTTCTTTCTTCGT
AATCAGGGATTGTAAAGCGCGTGCACGAAATTCGAGTTCTTTTAAATTTC
CAACTGAACCTTTATTAGCTAAGGCGCGTTCGCGTTCACTTGAACTGTCT
CTTCGCTTCCTTCTCTTCGCTCCATCTCTGTCTCGCGACAATGACCGCTT
CAAGTCCTGTCTTCGATTTGATTTTACGCTCGATTCTCGGGATCGTCTAT
TGTAATTATCGTTTTCATTGGAAGGTGACCGAGGCTGTTGTTTGCCTCGA
TTATTGTAATCATAGTTTTTCTTATTGTTCATCTGCATTTTGTCTGCGTA
CATTTTGTTACGAATGACTGTTCGCTTGTCGTGCTGTTCGGGGAAATCTT
TGGCAGCTCCTCCACGTCGATCGGCGCCTATGTCCTGTCTGTCTGGACCC
ATGTCTCGGCGTTCGGGTCCGCCTTCATTTCGACGCCGCTCAAGCTCTCG
TTGACGCCTACGCTCGTCGTAGCCAGCCGGCTTTTCTTTATTCATCATTC
CAGCGGGACCGGGGCCGGGACCTGGGCCTGCACCTTGCGGTCGCACGGGC
ATTTGATTTTGGCGATCGAGCTTTCCACGGAGATCTCCTCCCTTCTTGTC
TTGTTCCATACGGAATTGTTTCTGCTTTAGGTAATTTTGGAAATCTCGAC
GATCGTGTTCGGGATGTTtccgttgttgttgttgtccgTAATGTTGTGGA
AGAGGAGGTTGAGGGGGCTGTGGTGGCTGCAAGGAAATGAAAACAACAGG
GATTATAACCACCCAAAACTCGCACCTTGAATTATGTAGAAGATACATTA
CATAAAATTACGACCTGACCTGTGAAATCGCGTTAATTAGACATGAAGAA
ATCCAACTCAGGGTTAAAATAGCGTTACATTGAACACACCATTCAAAGGC
ACAACTAGCACGCCACAAGTTTTATTCATGGGGAATACCGAAAGACTACC
CACACACGTTCGAGGTCTACACCCCAAATCTTTCTATGGTCTTGATTCCA
GTCCGAGCGGGTACATTCATAAAAAGATCAATTAAAGGAGGGAAGCTACA
ACATATAGACTNAAGTAGGTAAAAATGAACTGGATAGACATCAATTATGC
CTGTACAAGGCTAAACCAAAAATGTATTttatcataaaaaagtttcatag
CTATAGTATATCAAGATTATGTACACTGCAAAggaaaatagaaagaaaat
aactagtctaaaatgttaagaaaatgaaaaaagtctaaaatctAACAGAA
GCTTTGCCTAATTCAGATAGAGAACGAACGACACATACTCATGAATAGTA
TGAATATGATAAGGACGGGTGAAAAGTTAGAGGGGTATGCTCGATATGCA
GAAGGCCAATTATATGGTCTACAATTGTCTTGGGAGTGAGAAATAGGCTT
TGTTCtagatctgaaattttcaatcaaattgctTTGTTACGTAAAAAAAT
TGTGGTACTCAAGCTTtcttcacatgcacgtaaaattttacgtaaTACCT
TACGGTAAGtcgttcgtaaggctgtcttttgggaatttccccgacattat
gtAGATTTTTTGTTAGttaagagggtcttacgtgacttttccctccgata
aaaactttttgaacgtaagcaaactctacataaggccttaaaacactacg
taagcttagggaaattccccacccttcaatttcaaaattttacgtacatg
tgaaaaaggCTTTAAGCAGGTTTATCAGCGTTGGAGGTTTTTGTAACGTG
AAAGAGTTGAAAACGTGTTCGTAGACGAGAATTAAAATCACGAATAAAAT
AGGTTAAACAATTCACGAAAGTCCAAATCTATTTCTTATTCATTGATAAC
AGTAGAGTCTATCATTCATACTCTCGTCCTGGTATTACATTTCCATCAAT
GAAAGACACAGTGTAATCAACAAAAATAGAGCATATTCTAAATCTCAAGT
TCATCATCTTAAATTCAATCCATGAGAGCGGTAGACACANTTTCTCATTT
GTCTTCTGTAAGCCTCttcgtcttcattttcttcattttcactgCTGCTA
CTCgatgaagaggaagaagaaCTAGAACCATCGCTTTCGTCCGAGCTGTC
GTTCTCGTTCGACCGGCCGCGCGATTTCCGGTTGGTCGCTTCGGAGGTGC
GGTCTTTTTCTCGCTGCTGTCGCTCTTTCTCTTGGTAGTACCTGCGAAGA
AAATGATATGTGGATGTGATTTGGAGCTTAAAAAAGACAACTTGTCAAGC
TAATTCAAGAAGGAAagagagaa Run BLAST on NCBI protein sequence of TCONS_00010045-protein >TCONS_00010045-protein ID=TCONS_00010045-protein|Name=TCONS_00010045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MYLLHNSRCEFWVVIIPVVFISLQPPQPPQPPLPQHYGQQQQRKHPEHDR
RDFQNYLKQKQFRMEQDKKGGDLRGKLDRQNQMPVRPQGAGPGPGPGPAG
MMNKEKPAGYDERRRQRELERRRNEGGPERRDMGPDRQDIGADRRGGAAK
DFPEQHDKRTVIRNKMYADKMQMNNKKNYDYNNRGKQQPRSPSNENDNYN
RRSRESSVKSNRRQDLKRSLSRDRDGAKRRKRRDSSSERERALANKGSVG
NLKELEFRARALQSLITKKEESNKAAYTRRDKR Run BLAST on NCBI transcript from alignment at sc0000101:331870..335092 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010045 ID=TCONS_00010045|Name=TCONS_00010045|organism=Clytia hemisphaerica|type=transcript|length=3223bp|location=Sequence derived from alignment at sc0000101:331870..335092 (Clytia hemisphaerica)
ttctctctTTCCTTCTTGAATTAGCTTGACAAGTTGTCTTTTTTAAGCTC
CAAATCACATCCACATATCATTTTCTTCGCAGGTACTACCAAGAGAAAGA
GCGACAGCAGCGAGAAAAAGACCGCACCTCCGAAGCGACCAACCGGAAAT
CGCGCGGCCGGTCGAACGAGAACGACAGCTCGGACGAAAGCGATGGTTCT
AGttcttcttcctcttcatcGAGTAGCAGcagtgaaaatgaagaaaatga
agacgaaGAGGCTTACAGAAGACAAATGAGAAANTGTGTCTACCGCTCTC
ATGGATTGAATTTAAGATGATGAACTTGAGATTTAGAATATGCTCTATTT
TTGTTGATTACACTGTGTCTTTCATTGATGGAAATGTAATACCAGGACGA
GAGTATGAATGATAGACTCTACTGTTATCAATGAATAAGAAATAGATTTG
GACTTTCGTGAATTGTTTAACCTATTTTATTCGTGATTTTAATTCTCGTC
TACGAACACGTTTTCAACTCTTTCACGTTACAAAAACCTCCAACGCTGAT
AAACCTGCTTAAAGcctttttcacatgtacgtaaaattttgaaattgaag
ggtggggaatttccctaagcttacgtagtgttttaaggccttatgtagag
tttgcttacgttcaaaaagtttttatcggagggaaaagtcacgtaagacc
ctcttaaCTAACAAAAAATCTacataatgtcggggaaattcccaaaagac
agccttacgaacgaCTTACCGTAAGGTAttacgtaaaattttacgtgcat
gtgaagaAAGCTTGAGTACCACAATTTTTTTACGTAACAAagcaatttga
ttgaaaatttcagatctaGAACAAAGCCTATTTCTCACTCCCAAGACAAT
TGTAGACCATATAATTGGCCTTCTGCATATCGAGCATACCCCTCTAACTT
TTCACCCGTCCTTATCATATTCATACTATTCATGAGTATGTGTCGTTCGT
TCTCTATCTGAATTAGGCAAAGCTTCTGTTagattttagacttttttcat
tttcttaacattttagactagttattttctttctattttccTTTGCAGTG
TACATAATCTTGATATACTATAGctatgaaacttttttatgataaAATAC
ATTTTTGGTTTAGCCTTGTACAGGCATAATTGATGTCTATCCAGTTCATT
TTTACCTACTTNAGTCTATATGTTGTAGCTTCCCTCCTTTAATTGATCTT
TTTATGAATGTACCCGCTCGGACTGGAATCAAGACCATAGAAAGATTTGG
GGTGTAGACCTCGAACGTGTGTGGGTAGTCTTTCGGTATTCCCCATGAAT
AAAACTTGTGGCGTGCTAGTTGTGCCTTTGAATGGTGTGTTCAATGTAAC
GCTATTTTAACCCTGAGTTGGATTTCTTCATGTCTAATTAACGCGATTTC
ACAGGTCAGGTCGTAATTTTATGTAATGTATCTTCTACATAATTCAAGGT
GCGAGTTTTGGGTGGTTATAATCCCTGTTGTTTTCATTTCCTTGCAGCCA
CCACAGCCCCCTCAACCTCCTCTTCCACAACATTAcggacaacaacaaca
acggaAACATCCCGAACACGATCGTCGAGATTTCCAAAATTACCTAAAGC
AGAAACAATTCCGTATGGAACAAGACAAGAAGGGAGGAGATCTCCGTGGA
AAGCTCGATCGCCAAAATCAAATGCCCGTGCGACCGCAAGGTGCAGGCCC
AGGTCCCGGCCCCGGTCCCGCTGGAATGATGAATAAAGAAAAGCCGGCTG
GCTACGACGAGCGTAGGCGTCAACGAGAGCTTGAGCGGCGTCGAAATGAA
GGCGGACCCGAACGCCGAGACATGGGTCCAGACAGACAGGACATAGGCGC
CGATCGACGTGGAGGAGCTGCCAAAGATTTCCCCGAACAGCACGACAAGC
GAACAGTCATTCGTAACAAAATGTACGCAGACAAAATGCAGATGAACAAT
AAGAAAAACTATGATTACAATAATCGAGGCAAACAACAGCCTCGGTCACC
TTCCAATGAAAACGATAATTACAATAGACGATCCCGAGAATCGAGCGTAA
AATCAAATCGAAGACAGGACTTGAAGCGGTCATTGTCGCGAGACAGAGAT
GGAGCGAAGAGAAGGAAGCGAAGAGACAGTTCAAGTGAACGCGAACGCGC
CTTAGCTAATAAAGGTTCAGTTGGAAATTTAAAAGAACTCGAATTTCGTG
CACGCGCTTTACAATCCCTGATTACGAAGAAAGAAGAATCAAATAAAGCG
GCTTACACGAGGCGTGATAAGAGATGATGAACGTGTCTACCCCTCTCATG
GATTGAATTTAAGATGATGAACTTGAGATTTAGAATATGCTCTATTTTTG
TTGATTACACTGTGTCTTTCATTGATGGAAATGTAATACCAGGACGAGAG
TATGAATGATAGACTCTACTGTTATCAATGAATAAGAAATAGATTTGGAC
TTTCGTGAATTGTTTAACCTATTTTATTCGTGATTTTAATTCTCGTCTAC
GAACACGTTTTCAACTCTTTCACGTTACAAAAACCTCCAACGCTGATAAA
CCTGCTTAAAGcctttttcacatgtacgtaaaattttgaaattgaagggt
ggggaatttccctaagcttacgtagtgttttaaggccttatgtagagttt
gcttacgttcaaaaagtttttatcggagggaaaagtcacgtaagaccctc
ttaaCTAACAAAAAATCTacataatgtcggggaaattcccaaaagacagc
cttacgaacgaCTTACCGTAAGGTAttacgtaaaattttacgtgcatgtg
aagaAAGCTTGAGTACCACAATTTTTTTACGTAACAAagcaatttgattg
aaaatttcagatctaGAACAAAGCCTATTTCTCACTCCCAAGACAATTGT
AGACCATATAATTGGCCTTCTGCATATCGAGCATACCCCTCTAACTTTTC
ACCCGTCCTTATCATATTCATACTATTCATGAGTATGTGTCGTTCGTTCT
CTATCTGAATTAGGCAAAGCTTCTGTTagattttagacttttttcatttt
cttaacattttagactagttattttctttctattttccTTTGCAGTGTAC
ATAATCTTGATATACTATAGctatgaaacttttttatgataaAATACATT
TTTGGTTTAGCCTTGTACAGGCA Coding sequence (CDS) from alignment at sc0000101:331870..335092 >TCONS_00010045 ID=TCONS_00010045|Name=TCONS_00010045|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000101:331870..335092 (Clytia hemisphaerica)
ATGTATCTTCTACATAATTCAAGGTGCGAGTTTTGGGTGGTTATAATCCC
TGTTGTTTTCATTTCCTTGCAGCCACCACAGCCCCCTCAACCTCCTCTTC
CACAACATTAcggacaacaacaacaacggaAACATCCCGAACACGATCGT
CGAGATTTCCAAAATTACCTAAAGCAGAAACAATTCCGTATGGAACAAGA
CAAGAAGGGAGGAGATCTCCGTGGAAAGCTCGATCGCCAAAATCAAATGC
CCGTGCGACCGCAAGGTGCAGGCCCAGGTCCCGGCCCCGGTCCCGCTGGA
ATGATGAATAAAGAAAAGCCGGCTGGCTACGACGAGCGTAGGCGTCAACG
AGAGCTTGAGCGGCGTCGAAATGAAGGCGGACCCGAACGCCGAGACATGG
GTCCAGACAGACAGGACATAGGCGCCGATCGACGTGGAGGAGCTGCCAAA
GATTTCCCCGAACAGCACGACAAGCGAACAGTCATTCGTAACAAAATGTA
CGCAGACAAAATGCAGATGAACAATAAGAAAAACTATGATTACAATAATC
GAGGCAAACAACAGCCTCGGTCACCTTCCAATGAAAACGATAATTACAAT
AGACGATCCCGAGAATCGAGCGTAAAATCAAATCGAAGACAGGACTTGAA
GCGGTCATTGTCGCGAGACAGAGATGGAGCGAAGAGAAGGAAGCGAAGAG
ACAGTTCAAGTGAACGCGAACGCGCCTTAGCTAATAAAGGTTCAGTTGGA
AATTTAAAAGAACTCGAATTTCGTGCACGCGCTTTACAATCCCTGATTAC
GAAGAAAGAAGAATCAAATAAAGCGGCTTACACGAGGCGTGATAAGAGAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010045-exon-sc0000101-1491911889:331870..335092 | TCONS_00010045-exon-sc0000101-1491911889:331870..335092 | Clytia hemisphaerica | exon |
| TCONS_00010045-exon-sc0000101-1510915933:331870..335092 | TCONS_00010045-exon-sc0000101-1510915933:331870..335092 | Clytia hemisphaerica | exon |
| TCONS_00010045-exon-sc0000101-1575043694:331870..335092 | TCONS_00010045-exon-sc0000101-1575043694:331870..335092 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000101 | supercontig | sc0000101:331870..335092 . |
Blast
The following BLAST results are available for this feature:
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