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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010058 ID=TCONS_00010058|Name=TCONS_00010058|organism=Clytia hemisphaerica|type=transcript|length=1155bp
GAAGTGTTTCATATAAGTTTTGCAGAACTTTTGGCTGTCATTTTGTTGAG
AAAAGGAAACTTTTTGCTGATATTTTAATttgattaaaataaaatggtag
aAGAAAACTTTCCAATCATAGATATATCATCACTGGTACAAACTCAATGT
CAAGATGAAACCATTTTACAAGAAGCAGCCAATCAATTGATGGATGGTTT
TAGTAAATGgggatttatttatttgaaagGTCATCCTATTCCTGAAGAAT
CGATTGCAACATTATTCAAAGAAtctgaaaatttctttacacaACCTGTC
GATAAGAAACGAGAAGTAGAAATGGACGCAACAGATAGTGATTATATTAT
GGGGTATGTTCCATTCAAAATGGAAAGAATCGATCCTAGAAAACCCTTTG
ATCTCAAAGAAGCCTTTGATTACAAACACCATATCCGACAAGATATGAAA
CAAAAATTGCCACCGCAATTTACAAAAAGCCTCGAAAATTTCTTTGACGA
ATGTTATGATTTGTCATTGCTGCTGTTCAAATTACTCAATAAATCCTTGG
ATATTGAGGATGATCAATTTTTCCCAAATTGCCACCGAAAGTCTGGTTAT
TTTGGAAATGGGACCTTGTTAAGGTCTTTATATTATCCTGGTATAGATTC
TAAAGATATTCTTCCAGAGCAAAGTAGATGTGGAGTGCATGCAGATTATG
GAACACTAACTTTGTTGTTCCAAAACGCAGAGGGTTTAGAGGTTAAATCA
CCATCAGGGAATTTCATCAAAGCGAAATTGATCGAAGGAACAATTATAGT
GAATGCAGCTGATCTTTTAGAACGTTGGTCAAGTGGACGAAtcaaatcta
ctttacatcgtgTTTCCTTACCAAAAGATACAAACCAACCAAGACAATCG
ATTGCATTCTTTGTTAACCCAGATAACGAAACTTTGGTGGAATGCCTCGA
TGGTTCAAATACTTGCAAACCTATTCGTGCTTCTGATTGGTTAACAAAGA
GGTTTGGGGAGACTTTGAGTTAGAATACTCTGCTGACTTTATAActaata
atgttttacagattcCCAGGCCACCTTGCAAGCACATGgtgggcctctat
aaatcgctcatacattggtttggtttattaaagtttttataaagtTAGAA
TTTTA Run BLAST on NCBI transcript from alignment at sc0000102:39940..46776+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010058 ID=TCONS_00010058|Name=TCONS_00010058|organism=Clytia hemisphaerica|type=transcript|length=6837bp|location=Sequence derived from alignment at sc0000102:39940..46776+ (Clytia hemisphaerica)
GAAGTGTTTCATATAAGTTTTGCAGAACTTTTGGCTGTCATTTTGTTGAG
AAAAGGAAACTTTTTGCTGATATTTTAATttgattaaaataaaatggtag
aAGAAAACTTTCCAATCATAGATATATCATCACTGGTACAAACTCAATGT
CAAGATGAAACCATTTTACAAGAAGCAGCCAATCAATTGATGGATGGTTT
TAGTAAATGgggatttatttatttgaaagGTCATCCTATTCCTGAAGAAT
CGATTGCAACATTATTCAAAGAAtctgaaaatttctttacacaACCTGTC
GATAAGAAACGAGAAGTAGAAATGGACGCAACAGATAGTGATTATATTAT
GGGGTATGTTCCATTCAAAATGGAAAGAATCGATCCTAGAAAACCCTTTG
ATCTCAAAGAAGCCTTTGATTACAAACACCATATCCGACAAGATATGAAA
CAAAAATTGCCACCGCAATTTACAAAAAGCCTCGAAAATTTCTTTGACGA
ATGTTATGATTTGTCATTGCTGCTGTTCAAATTACTCAATAAATCCTTGG
ATATTGAGGATGATCAATTTTTCCCAAATTGCCACCGAAAGTCTGGTTAT
TTTGGAAATGGGACCTTGTTAAGGTCTTTATATTATCCTGGTATAGATTC
TAAAGATATTCTTCCAGAGCAAAGTAGATGTGGAGTGCATGCAGATTATG
GAACACTAACTTTGTTGTTCCAAAACGCAGAGGGTTTAGAGGTAAAACTA
TTCAGTGTTCAAAGTtttcgagtctgctaaattgcgtgggttgcgtgggt
gcgtgggtcaatatttttgcgtgggttgATATTTTTGcatgggtcatttt
tttgcgtgggtgcgtgggtcaaaatattttttgcgtgggtcaattttttt
gcgtgggtcaattttttttgcgtgggtcaaattttttgcgtgggtcattt
tttttgcgtgggtaaaaaattttgcgtgggccatatttttttgcatgggt
cattattttttgcgtgggtcatattttttgcgtgggtcattattttttgc
gtgggtcaaagtttttgagtgggtcactattttttggtgattttttagct
aactcgatttttttaccaaattaaaactttcgagttagcttagacgtttt
ttttgtcaaatcttggtcaagttaaaattttcaagttatcttatacaaaa
atgtgttgtgtataaatctacgaaaactaaacaaaagcacacagttttta
tgtagtaacaccttgtggtttattttacatagctgcacttatttactata
acattatacagaatcaacacacacccgcctaatttttgtagacacacttc
aggatcacacttttgaattttagcatgctatatttcaagattccagtgtc
atggaaataaacactataactttaattttctcCTCCCTTTTCtattgctt
tgaaaaaaagtacagcgtctttatttcgtccaattttttaaattggcctt
taatgtacttaaatcaaagaaattacaagtgGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGGTCG
CCTAATGAATAtaacttttgtagaaaaattttcagattttgtcgcCATTT
GCTTTGTTCTTTAACACTCAAAGGAAACCCAAAAGATTAAAGCGTTGCTA
TAAGAAGCTTTAAAGCTTCTAAAAAgattctacacgtttttttatataag
aacaaactatataaaaacataaggcttcaaatccaaaaaactaagaacat
ccaaaggcttcgaaaattgttgacgttcttataaaaaaaacgtgtataaa
gcttcctcttataaaaagacagcTACAGCTATgcaacataaacaaaataa
ccaaaacgtgttatgtaaaacacatccaacattttggatgtgaccagttc
gaatttcaagggaaggtattttttcgaattacagagagaatttcgaccca
cgcaaaaattttgacccacgcaaaaaatatgacccacgcaaaaaaaattg
acccacgcaaaaaatattttgacccacgcaaaaaatttgacccacgcaaa
atttttgacccacgcaaaaaatattttgacccacgcacccacgcaaaaaa
ttgacccacgcaaaaatatcgacccacgcacccacgcaacccacgcaatt
tagcagactcaaagTTTTcccgtctcagacggatttccgtctcagcgagg
tacaaaaaaagacttttccgtctccaaattcaacaaaattctgcaaaaca
tGAATAATATGGCCAGATTTGTTGTTCAAAGTCCATTTCCGTCTGTGatg
aaaattttgctttgaccactgctATATTTATGATCATTTCTAACTTTTTT
ACTGGCTTATACATTTGTATTAGAAGGTCGTATAAGAAGTAAATAGTGTC
CTCTAGTGGTGTCAGCCAGGACTTGTCCATTTAAGTCTTTTTTTAACAAC
TTACTTTTAATTCTAGCTTTTAAAGGACTTTGATGCAATGATATAACTAA
AAAATTAGTGTCATCTTTCCCTCAGGTTAAATCACCATCAGGGAATTTCA
TCAAAGCGAAATTGATCGAAGGAACAATTATAGTGAATGCAGCTGATCTT
TTAGAACGTTGGTCAAGTGGACGAAtcaaatctactttacatcgtgTTTC
CTTACCGAAGGATACAAACCAACCAAGACAATCAGTTGCATTCTTTGTGA
TGCCTGACAACGAATGTATAGTGGAATGTTTAGATGGCTCCAATACTTAC
GAACCAATCACAGCTTTCGATCATATTGACAATATGTACAAAGCCACATT
CAGAGATTGAAAATTAACAACAGACTTTGCACCCACATTCCTCTTGGTTT
GTTTTCATGATTTACTGACCGAAATTAACGTTTGTGTGGCATACTCTTTG
TTGTCAAAATAATTAGAAGATATTAAGTAATTAAAGTGGtgcatattcaa
tttttttaaatgttcttcTACACATCCATGCATGGACACTTGGACACAAT
TCCACAacacaaaatttagttttttataCTTAAAGCTTTggcatattttt
gttttctcttatatttatattttgataaaatttatattttgataaaacct
tttttttttacttgtttttatatttctcatatatatatttttttgattag
GAATTCATACAAATCTtgagtaccttaagggaactcgccaaaattcgcca
aaattagttcccgccaaaattaaatattttgctcactcgccaaaataagt
tcccgccaaaatttaaattttttgtttccttgcctattaataacccctga
aattcatcaaaattgctcaaaataaggcaaaataaaacatatttacgctg
tcattcgccaaaattagttcccgccaaaattaaaaaattcactattcacc
aaaataagttcccgccaaaattaattttttttaagattttcgccgctcgc
caaaattagttcccgccaaaataagttcccttaaggtacaggGATCCCAC
TCCTcctaaaattcctaaaaatcctaaaaTAAGACAAAACTCCTAAAATC
CTCCTAAAACTCAACAAATTCTCCTAAATTCATAAAGTCTGAAAACTTTA
TCAAGCACGACGGTAGCAAATTATGTTTGTATATTTGTATAATCAGACAG
GAAgctaagatttttttctcattaaagtcaaaacaaactggGAGTAGTAA
GCTACCTGACCTTGAAACAAcatgtttaaaatatatttttgcacTGAAAT
ATTTGGAACAAAAGCCTATGTTAATTGAAAGAGTGCAGACTGTGTTCAAC
AAAGAGGGCTCAAATGTTCAAGAACAAGGTTTGGTGGTTTGCGCCCTCAT
CTGTGAATTTTTTACTTGAgcatagaatgcaccccccTGAACttaggggg
ggggctaaaccatttttgcttgattggggactgtatttcaaaaaaagata
ctGGGACTAGCTTGCTAGGGGGTTGAGTGTTAAGTAATAGAACTGTGGTC
AGAGCTGATAggttacaaatattttaaattatgccaaaaatctatgctgt
ggggaaggttttgacccctcttaaaaaaatttatcttatCTTATTAAGAA
TTTGCATATAAAATTTCTAtgatattttgttttgtgaaaGTGGAGGCTAA
GTTTTAAGAGTTTTTCTGGGGCTTTTTTTCCTTCGCCtcccccctgaaaa
atgctgggggctggacccctctgcacactatggcaTAGGCTTTGTTAGAA
CGAATAATATAATACGTAAAGTAATTTTATTTCAGTCTTCCTGTgggtga
ttttttttcggtagAACATCTTTCTAATGGCTGACTTCAGGtcgatttta
gaaatttatttcttaaattttcctaaaatgctcctaaaaaattgaaaatt
ctcctaaaattctcctaaaatttggccaaaatcctCCTAAAATTTGTCCT
AAAATTAACATAATCAGGCGTGGGATCCCTGAAGGTACGCAATCACTGAA
ATGATCTAGATCTTCCTTTATATTTAGTTTATAAGGGCGTAACTTCTGAA
ACTATGAACCAAACATAAATATATCAATAAGTGCTTAAACTGACAGCCTT
TTGAGCTTTAGCCTTTTTCAGTGTCGCTTCTCAAGTTATGAGAATAAGTG
TACACTATTTCTGGGAGAATTTCTTCataaatctttttaaatttttaatt
tcagagAGAGTATATAATGGTAGAAGAAAACTTTCCAATCATAGATATTT
CATCACTGGTACAAACTCAATGTCAAGATGAACCCATTTTACAAGAAGCA
GCCAATCAATTGATGGATGGTTTTAGTAAATGGGGATTCATTTATTTGAA
AGGTCATCCTATTCCTGAAGAATCAATCGCAACATTATTCAAAGAAtctg
aaaatttctttacacaGCCTCTAGCAACTAAAAAAGAACTCTCAGTCGAT
ATCAACGATACTGATAATATTTCTGGTTACACTCCTTATAAAATGGAATC
ATTTGATTCATCCAAACCGTTCGATCTCAAAGAAGCATTCAACTATCTTC
ACCATGTACACCCAGAGATGAAGGACAAATTACCAAGCACTTTCCTACAA
TCGTTAAAAGACTTTTTCGATCGCTGCCATGAATTAACACTTTTGCTATT
CAAACTCCTGGCAATCTCATTGGACGTCAACGATTCAGATTACTTTCCAA
ACGCACATCAAAACATAGGCTTTCTTGGTAACACAACAGCATTGAGATCT
TTATATTATCCAGGTGTTGATTCTAAAGAGATTCTTCCTGAACAAATTAG
GTGTGGTGAACATACAGACTATGGAACGTTAACTTTGCTTTTCCCAAAAG
CTGAAGGTCTAGAGGTAAATATAATCAGCTTTTTCGAGAACCAAGAGAAT
CCTACTGTATTGATGCTTTCAAGTGAGGCTCCGCTGTTCCTTTTATTTCT
TGATTGTTTGGCTGGAGTTTTATTTTTAAGCCGTTCTTAACTGCTCTCGG
GTACcaaatagccggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcgggggggg
ggggttggaaaaaatctcggggagggggttggaataagaatgtcctgggt
ggaaaattttcgaaaaattaaatagcggcggggacggctattaagtaccc
caAAGTAATTTTCTTTACTCGAGAGCGTATAAGTACCTACTTGGTCGCCC
ATGTTTGAAATTGTAATCTTACATCTTACATCATCAATTTTACATCATAA
TCTTACAGATGTTCTTGTGCTTAGAATTGATCAATTGAGCCTCATGAGCC
TCGTTTTCTATTGAAGAGCCCCCTCCCCCATCGGACCTTcgattcacgca
atcacgcaaagttttttcgcaattcacgcaatatttgttcacgcaaagct
ttccaattcacgcatttacgcaagtcaaaaagcccattcacgcattcatg
caaacCGCTAGGGCTCCCATCGAAACTGTTCTTAACTTCAATTTGAATAG
GTATTCATTGTATGGAGATTACTAGGGCACTTACGGTttgtatttctatt
tctatcgtATTTTGATTAAGTTTTCTAAAGCTCAATATACAACATACAAA
AACGGCCTTTTTGGACGCGCTCTGAACTGTCTGGGGAACAAGATTGCATA
AGCATTAgcattttgtcatatttttttcGGTCAATTCATTATTGACGTAT
ATTCTTACTTATCTATCTGTCAGGTTAAATCACCATCAGGGAATTTCATC
AAAGCGAAATTGATCGAAGGAACAATTATAGTGAATGCAGCTGATCTTTT
AGAACGTTGGTCAAGTGGACGAAtcaaatctactttacatcgtgTTTCCT
TACCAAAAGATACAAACCAACCAAGACAATCGATTGCATTCTTTGTTAAC
CCAGATAACGAAACTTTGGTGGAATGCCTCGATGGTTCAAATACTTGCAA
ACCTATTCGTGCTTCTGATTGGTTAACAAAGAGGTTTGGGGAGACTTTGA
GTTAGAATACTCTGCTGACTTTATAActaataatgttttacagattcCCA
GGCCACCTTGCAAGCACATGgtgggcctctataaatcgctcatacattgg
tttggtttattaaagtttttataaagtTAGAATTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010058-exon-sc0000102-1491911889:39940..40680 | TCONS_00010058-exon-sc0000102-1491911889:39940..40680 | Clytia hemisphaerica | exon |
| TCONS_00010058-exon-sc0000102-1510915933:39940..40680 | TCONS_00010058-exon-sc0000102-1510915933:39940..40680 | Clytia hemisphaerica | exon |
| TCONS_00010058-exon-sc0000102-1575043694:39940..40680 | TCONS_00010058-exon-sc0000102-1575043694:39940..40680 | Clytia hemisphaerica | exon |
| TCONS_00010058-exon-sc0000102-1491911889:46363..46776 | TCONS_00010058-exon-sc0000102-1491911889:46363..46776 | Clytia hemisphaerica | exon |
| TCONS_00010058-exon-sc0000102-1510915933:46363..46776 | TCONS_00010058-exon-sc0000102-1510915933:46363..46776 | Clytia hemisphaerica | exon |
| TCONS_00010058-exon-sc0000102-1575043694:46363..46776 | TCONS_00010058-exon-sc0000102-1575043694:46363..46776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:39940..46776 + |
Blast
The following BLAST results are available for this feature:
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