|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010059 ID=TCONS_00010059|Name=TCONS_00010059|organism=Clytia hemisphaerica|type=transcript|length=1154bp
AAGTGTTTCATATAAGTTTTGCAGAACTTTTGGCTGTCATTTTGTTGAGA
AAAGGAAACTTTTTGCTGATATTTTAATttgattaaaataaaatggtaga
AGAAAACTTTCCAATCATAGATATATCATCACTGGTACAAACTCAATGTC
AAGATGAAACCATTTTACAAGAAGCAGCCAATCAATTGATGGATGGTTTT
AGTAAATGgggatttatttatttgaaagGTCATCCTATTCCTGAAGAATC
GATTGCAACATTATTCAAAGAAtctgaaaatttctttacacaACCTGTCG
ATAAGAAACGAGAAGTAGAAATGGACGCAACAGATAGTGATTATATTATG
GGGTATGTTCCATTCAAAATGGAAAGAATCGATCCTAGAAAACCCTTTGA
TCTCAAAGAAGCCTTTGATTACAAACACCATATCCGACAAGATATGAAAC
AAAAATTGCCACCGCAATTTACAAAAAGCCTCGAAAATTTCTTTGACGAA
TGTTATGATTTGTCATTGCTGCTGTTCAAATTACTCAATAAATCCTTGGA
TATTGAGGATGATCAATTTTTCCCAAATTGCCACCGAAAGTCTGGTTATT
TTGGAAATGGGACCTTGTTAAGATCTTTATATTATCCAGGTGTTGATTCT
AAAGAGATTCTTCCTGAACAAATTAGGTGTGGTGAACATACAGACTATGG
AACGTTAACTTTGCTTTTCCCAAAAGCTGAAGGTCTAGAGGTTAAATCAC
CATCAGGGAATTTCATCAAAGCGAAATTGATCGAAGGAACAATTATAGTG
AATGCAGCTGATCTTTTAGAACGTTGGTCAAGTGGACGAAtcaaatctac
tttacatcgtgTTTCCTTACCAAAAGATACAAACCAACCAAGACAATCGA
TTGCATTCTTTGTTAACCCAGATAACGAAACTTTGGTGGAATGCCTCGAT
GGTTCAAATACTTGCAAACCTATTCGTGCTTCTGATTGGTTAACAAAGAG
GTTTGGGGAGACTTTGAGTTAGAATACTCTGCTGACTTTATAActaataa
tgttttacagattcCCAGGCCACCTTGCAAGCACATGgtgggcctctata
aatcgctcatacattggtttggtttattaaagtttttataaagtTAGAAT
TTTA Run BLAST on NCBI protein sequence of TCONS_00010059-protein >TCONS_00010059-protein ID=TCONS_00010059-protein|Name=TCONS_00010059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MVEENFPIIDISSLVQTQCQDETILQEAANQLMDGFSKWGFIYLKGHPIP
EESIATLFKESENFFTQPVDKKREVEMDATDSDYIMGYVPFKMERIDPRK
PFDLKEAFDYKHHIRQDMKQKLPPQFTKSLENFFDECYDLSLLLFKLLNK
SLDIEDDQFFPNCHRKSGYFGNGTLLRSLYYPGVDSKEILPEQIRCGEHT
DYGTLTLLFPKAEGLEVKSPSGNFIKAKLIEGTIIVNAADLLERWSSGRI
KSTLHRVSLPKDTNQPRQSIAFFVNPDNETLVECLDGSNTCKPIRASDWL
TKRFGETLS Run BLAST on NCBI transcript from alignment at sc0000102:39941..46776+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010059 ID=TCONS_00010059|Name=TCONS_00010059|organism=Clytia hemisphaerica|type=transcript|length=6836bp|location=Sequence derived from alignment at sc0000102:39941..46776+ (Clytia hemisphaerica)
AAGTGTTTCATATAAGTTTTGCAGAACTTTTGGCTGTCATTTTGTTGAGA
AAAGGAAACTTTTTGCTGATATTTTAATttgattaaaataaaatggtaga
AGAAAACTTTCCAATCATAGATATATCATCACTGGTACAAACTCAATGTC
AAGATGAAACCATTTTACAAGAAGCAGCCAATCAATTGATGGATGGTTTT
AGTAAATGgggatttatttatttgaaagGTCATCCTATTCCTGAAGAATC
GATTGCAACATTATTCAAAGAAtctgaaaatttctttacacaACCTGTCG
ATAAGAAACGAGAAGTAGAAATGGACGCAACAGATAGTGATTATATTATG
GGGTATGTTCCATTCAAAATGGAAAGAATCGATCCTAGAAAACCCTTTGA
TCTCAAAGAAGCCTTTGATTACAAACACCATATCCGACAAGATATGAAAC
AAAAATTGCCACCGCAATTTACAAAAAGCCTCGAAAATTTCTTTGACGAA
TGTTATGATTTGTCATTGCTGCTGTTCAAATTACTCAATAAATCCTTGGA
TATTGAGGATGATCAATTTTTCCCAAATTGCCACCGAAAGTCTGGTTATT
TTGGAAATGGGACCTTGTTAAGGTCTTTATATTATCCTGGTATAGATTCT
AAAGATATTCTTCCAGAGCAAAGTAGATGTGGAGTGCATGCAGATTATGG
AACACTAACTTTGTTGTTCCAAAACGCAGAGGGTTTAGAGGTAAAACTAT
TCAGTGTTCAAAGTtttcgagtctgctaaattgcgtgggttgcgtgggtg
cgtgggtcaatatttttgcgtgggttgATATTTTTGcatgggtcattttt
ttgcgtgggtgcgtgggtcaaaatattttttgcgtgggtcaatttttttg
cgtgggtcaattttttttgcgtgggtcaaattttttgcgtgggtcatttt
ttttgcgtgggtaaaaaattttgcgtgggccatatttttttgcatgggtc
attattttttgcgtgggtcatattttttgcgtgggtcattattttttgcg
tgggtcaaagtttttgagtgggtcactattttttggtgattttttagcta
actcgatttttttaccaaattaaaactttcgagttagcttagacgttttt
tttgtcaaatcttggtcaagttaaaattttcaagttatcttatacaaaaa
tgtgttgtgtataaatctacgaaaactaaacaaaagcacacagtttttat
gtagtaacaccttgtggtttattttacatagctgcacttatttactataa
cattatacagaatcaacacacacccgcctaatttttgtagacacacttca
ggatcacacttttgaattttagcatgctatatttcaagattccagtgtca
tggaaataaacactataactttaattttctcCTCCCTTTTCtattgcttt
gaaaaaaagtacagcgtctttatttcgtccaattttttaaattggccttt
aatgtacttaaatcaaagaaattacaagtgGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGGTCGC
CTAATGAATAtaacttttgtagaaaaattttcagattttgtcgcCATTTG
CTTTGTTCTTTAACACTCAAAGGAAACCCAAAAGATTAAAGCGTTGCTAT
AAGAAGCTTTAAAGCTTCTAAAAAgattctacacgtttttttatataaga
acaaactatataaaaacataaggcttcaaatccaaaaaactaagaacatc
caaaggcttcgaaaattgttgacgttcttataaaaaaaacgtgtataaag
cttcctcttataaaaagacagcTACAGCTATgcaacataaacaaaataac
caaaacgtgttatgtaaaacacatccaacattttggatgtgaccagttcg
aatttcaagggaaggtattttttcgaattacagagagaatttcgacccac
gcaaaaattttgacccacgcaaaaaatatgacccacgcaaaaaaaattga
cccacgcaaaaaatattttgacccacgcaaaaaatttgacccacgcaaaa
tttttgacccacgcaaaaaatattttgacccacgcacccacgcaaaaaat
tgacccacgcaaaaatatcgacccacgcacccacgcaacccacgcaattt
agcagactcaaagTTTTcccgtctcagacggatttccgtctcagcgaggt
acaaaaaaagacttttccgtctccaaattcaacaaaattctgcaaaacat
GAATAATATGGCCAGATTTGTTGTTCAAAGTCCATTTCCGTCTGTGatga
aaattttgctttgaccactgctATATTTATGATCATTTCTAACTTTTTTA
CTGGCTTATACATTTGTATTAGAAGGTCGTATAAGAAGTAAATAGTGTCC
TCTAGTGGTGTCAGCCAGGACTTGTCCATTTAAGTCTTTTTTTAACAACT
TACTTTTAATTCTAGCTTTTAAAGGACTTTGATGCAATGATATAACTAAA
AAATTAGTGTCATCTTTCCCTCAGGTTAAATCACCATCAGGGAATTTCAT
CAAAGCGAAATTGATCGAAGGAACAATTATAGTGAATGCAGCTGATCTTT
TAGAACGTTGGTCAAGTGGACGAAtcaaatctactttacatcgtgTTTCC
TTACCGAAGGATACAAACCAACCAAGACAATCAGTTGCATTCTTTGTGAT
GCCTGACAACGAATGTATAGTGGAATGTTTAGATGGCTCCAATACTTACG
AACCAATCACAGCTTTCGATCATATTGACAATATGTACAAAGCCACATTC
AGAGATTGAAAATTAACAACAGACTTTGCACCCACATTCCTCTTGGTTTG
TTTTCATGATTTACTGACCGAAATTAACGTTTGTGTGGCATACTCTTTGT
TGTCAAAATAATTAGAAGATATTAAGTAATTAAAGTGGtgcatattcaat
ttttttaaatgttcttcTACACATCCATGCATGGACACTTGGACACAATT
CCACAacacaaaatttagttttttataCTTAAAGCTTTggcatatttttg
ttttctcttatatttatattttgataaaatttatattttgataaaacctt
ttttttttacttgtttttatatttctcatatatatatttttttgattagG
AATTCATACAAATCTtgagtaccttaagggaactcgccaaaattcgccaa
aattagttcccgccaaaattaaatattttgctcactcgccaaaataagtt
cccgccaaaatttaaattttttgtttccttgcctattaataacccctgaa
attcatcaaaattgctcaaaataaggcaaaataaaacatatttacgctgt
cattcgccaaaattagttcccgccaaaattaaaaaattcactattcacca
aaataagttcccgccaaaattaattttttttaagattttcgccgctcgcc
aaaattagttcccgccaaaataagttcccttaaggtacaggGATCCCACT
CCTcctaaaattcctaaaaatcctaaaaTAAGACAAAACTCCTAAAATCC
TCCTAAAACTCAACAAATTCTCCTAAATTCATAAAGTCTGAAAACTTTAT
CAAGCACGACGGTAGCAAATTATGTTTGTATATTTGTATAATCAGACAGG
AAgctaagatttttttctcattaaagtcaaaacaaactggGAGTAGTAAG
CTACCTGACCTTGAAACAAcatgtttaaaatatatttttgcacTGAAATA
TTTGGAACAAAAGCCTATGTTAATTGAAAGAGTGCAGACTGTGTTCAACA
AAGAGGGCTCAAATGTTCAAGAACAAGGTTTGGTGGTTTGCGCCCTCATC
TGTGAATTTTTTACTTGAgcatagaatgcaccccccTGAACttagggggg
gggctaaaccatttttgcttgattggggactgtatttcaaaaaaagatac
tGGGACTAGCTTGCTAGGGGGTTGAGTGTTAAGTAATAGAACTGTGGTCA
GAGCTGATAggttacaaatattttaaattatgccaaaaatctatgctgtg
gggaaggttttgacccctcttaaaaaaatttatcttatCTTATTAAGAAT
TTGCATATAAAATTTCTAtgatattttgttttgtgaaaGTGGAGGCTAAG
TTTTAAGAGTTTTTCTGGGGCTTTTTTTCCTTCGCCtcccccctgaaaaa
tgctgggggctggacccctctgcacactatggcaTAGGCTTTGTTAGAAC
GAATAATATAATACGTAAAGTAATTTTATTTCAGTCTTCCTGTgggtgat
tttttttcggtagAACATCTTTCTAATGGCTGACTTCAGGtcgattttag
aaatttatttcttaaattttcctaaaatgctcctaaaaaattgaaaattc
tcctaaaattctcctaaaatttggccaaaatcctCCTAAAATTTGTCCTA
AAATTAACATAATCAGGCGTGGGATCCCTGAAGGTACGCAATCACTGAAA
TGATCTAGATCTTCCTTTATATTTAGTTTATAAGGGCGTAACTTCTGAAA
CTATGAACCAAACATAAATATATCAATAAGTGCTTAAACTGACAGCCTTT
TGAGCTTTAGCCTTTTTCAGTGTCGCTTCTCAAGTTATGAGAATAAGTGT
ACACTATTTCTGGGAGAATTTCTTCataaatctttttaaatttttaattt
cagagAGAGTATATAATGGTAGAAGAAAACTTTCCAATCATAGATATTTC
ATCACTGGTACAAACTCAATGTCAAGATGAACCCATTTTACAAGAAGCAG
CCAATCAATTGATGGATGGTTTTAGTAAATGGGGATTCATTTATTTGAAA
GGTCATCCTATTCCTGAAGAATCAATCGCAACATTATTCAAAGAAtctga
aaatttctttacacaGCCTCTAGCAACTAAAAAAGAACTCTCAGTCGATA
TCAACGATACTGATAATATTTCTGGTTACACTCCTTATAAAATGGAATCA
TTTGATTCATCCAAACCGTTCGATCTCAAAGAAGCATTCAACTATCTTCA
CCATGTACACCCAGAGATGAAGGACAAATTACCAAGCACTTTCCTACAAT
CGTTAAAAGACTTTTTCGATCGCTGCCATGAATTAACACTTTTGCTATTC
AAACTCCTGGCAATCTCATTGGACGTCAACGATTCAGATTACTTTCCAAA
CGCACATCAAAACATAGGCTTTCTTGGTAACACAACAGCATTGAGATCTT
TATATTATCCAGGTGTTGATTCTAAAGAGATTCTTCCTGAACAAATTAGG
TGTGGTGAACATACAGACTATGGAACGTTAACTTTGCTTTTCCCAAAAGC
TGAAGGTCTAGAGGTAAATATAATCAGCTTTTTCGAGAACCAAGAGAATC
CTACTGTATTGATGCTTTCAAGTGAGGCTCCGCTGTTCCTTTTATTTCTT
GATTGTTTGGCTGGAGTTTTATTTTTAAGCCGTTCTTAACTGCTCTCGGG
TACcaaatagccggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcggggggggg
gggttggaaaaaatctcggggagggggttggaataagaatgtcctgggtg
gaaaattttcgaaaaattaaatagcggcggggacggctattaagtacccc
aAAGTAATTTTCTTTACTCGAGAGCGTATAAGTACCTACTTGGTCGCCCA
TGTTTGAAATTGTAATCTTACATCTTACATCATCAATTTTACATCATAAT
CTTACAGATGTTCTTGTGCTTAGAATTGATCAATTGAGCCTCATGAGCCT
CGTTTTCTATTGAAGAGCCCCCTCCCCCATCGGACCTTcgattcacgcaa
tcacgcaaagttttttcgcaattcacgcaatatttgttcacgcaaagctt
tccaattcacgcatttacgcaagtcaaaaagcccattcacgcattcatgc
aaacCGCTAGGGCTCCCATCGAAACTGTTCTTAACTTCAATTTGAATAGG
TATTCATTGTATGGAGATTACTAGGGCACTTACGGTttgtatttctattt
ctatcgtATTTTGATTAAGTTTTCTAAAGCTCAATATACAACATACAAAA
ACGGCCTTTTTGGACGCGCTCTGAACTGTCTGGGGAACAAGATTGCATAA
GCATTAgcattttgtcatatttttttcGGTCAATTCATTATTGACGTATA
TTCTTACTTATCTATCTGTCAGGTTAAATCACCATCAGGGAATTTCATCA
AAGCGAAATTGATCGAAGGAACAATTATAGTGAATGCAGCTGATCTTTTA
GAACGTTGGTCAAGTGGACGAAtcaaatctactttacatcgtgTTTCCTT
ACCAAAAGATACAAACCAACCAAGACAATCGATTGCATTCTTTGTTAACC
CAGATAACGAAACTTTGGTGGAATGCCTCGATGGTTCAAATACTTGCAAA
CCTATTCGTGCTTCTGATTGGTTAACAAAGAGGTTTGGGGAGACTTTGAG
TTAGAATACTCTGCTGACTTTATAActaataatgttttacagattcCCAG
GCCACCTTGCAAGCACATGgtgggcctctataaatcgctcatacattggt
ttggtttattaaagtttttataaagtTAGAATTTTA Coding sequence (CDS) from alignment at sc0000102:39941..46776+ >TCONS_00010059 ID=TCONS_00010059|Name=TCONS_00010059|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0000102:39941..46776+ (Clytia hemisphaerica)
atggtagaAGAAAACTTTCCAATCATAGATATATCATCACTGGTACAAAC
TCAATGTCAAGATGAAACCATTTTACAAGAAGCAGCCAATCAATTGATGG
ATGGTTTTAGTAAATGgggatttatttatttgaaagGTCATCCTATTCCT
GAAGAATCGATTGCAACATTATTCAAAGAAtctgaaaatttctttacaca
ACCTGTCGATAAGAAACGAGAAGTAGAAATGGACGCAACAGATAGTGATT
ATATTATGGGGTATGTTCCATTCAAAATGGAAAGAATCGATCCTAGAAAA
CCCTTTGATCTCAAAGAAGCCTTTGATTACAAACACCATATCCGACAAGA
TATGAAACAAAAATTGCCACCGCAATTTACAAAAAGCCTCGAAAATTTCT
TTGACGAATGTTATGATTTGTCATTGCTGCTGTTCAAATTACTCAATAAA
TCCTTGGATATTGAGGATGATCAATTTTTCCCAAATTGCCACCGAAAGTC
TGGTTATTTTGGAAATGGGACCTTGTTAAGATCTTTATATTATCCAGGTG
TTGATTCTAAAGAGATTCTTCCTGAACAAATTAGGTGTGGTGAACATACA
GACTATGGAACGTTAACTTTGCTTTTCCCAAAAGCTGAAGGTCTAGAGGT
TAAATCACCATCAGGGAATTTCATCAAAGCGAAATTGATCGAAGGAACAA
TTATAGTGAATGCAGCTGATCTTTTAGAACGTTGGTCAAGTGGACGAAtc
aaatctactttacatcgtgTTTCCTTACCAAAAGATACAAACCAACCAAG
ACAATCGATTGCATTCTTTGTTAACCCAGATAACGAAACTTTGGTGGAAT
GCCTCGATGGTTCAAATACTTGCAAACCTATTCGTGCTTCTGATTGGTTA
ACAAAGAGGTTTGGGGAGACTTTGAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010059-exon-sc0000102-1491911889:39941..40562 | TCONS_00010059-exon-sc0000102-1491911889:39941..40562 | Clytia hemisphaerica | exon |
| TCONS_00010059-exon-sc0000102-1510915933:39941..40562 | TCONS_00010059-exon-sc0000102-1510915933:39941..40562 | Clytia hemisphaerica | exon |
| TCONS_00010059-exon-sc0000102-1575043694:39941..40562 | TCONS_00010059-exon-sc0000102-1575043694:39941..40562 | Clytia hemisphaerica | exon |
| TCONS_00010059-exon-sc0000102-1491911889:45336..45453 | TCONS_00010059-exon-sc0000102-1491911889:45336..45453 | Clytia hemisphaerica | exon |
| TCONS_00010059-exon-sc0000102-1510915933:45336..45453 | TCONS_00010059-exon-sc0000102-1510915933:45336..45453 | Clytia hemisphaerica | exon |
| TCONS_00010059-exon-sc0000102-1575043694:45336..45453 | TCONS_00010059-exon-sc0000102-1575043694:45336..45453 | Clytia hemisphaerica | exon |
| TCONS_00010059-exon-sc0000102-1491911889:46363..46776 | TCONS_00010059-exon-sc0000102-1491911889:46363..46776 | Clytia hemisphaerica | exon |
| TCONS_00010059-exon-sc0000102-1510915933:46363..46776 | TCONS_00010059-exon-sc0000102-1510915933:46363..46776 | Clytia hemisphaerica | exon |
| TCONS_00010059-exon-sc0000102-1575043694:46363..46776 | TCONS_00010059-exon-sc0000102-1575043694:46363..46776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:39941..46776 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
|
