|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010060 ID=TCONS_00010060|Name=TCONS_00010060|organism=Clytia hemisphaerica|type=transcript|length=1067bp
ATATAATGGTAGAAGAAAACTTTCCAATCATAGATATTTCATCACTGGTA
CAAACTCAATGTCAAGATGAACCCATTTTACAAGAAGCAGCCAATCAATT
GATGGATGGTTTTAGTAAATGGGGATTCATTTATTTGAAAGGTCATCCTA
TTCCTGAAGAATCAATCGCAACATTATTCAAAGAAtctgaaaatttcttt
acacaGCCTCTAGCAACTAAAAAAGAACTCTCAGTCGATATCAACGATAC
TGATAATATTTCTGGTTACACTCCTTATAAAATGGAATCATTTGATTCAT
CCAAACCGTTCGATCTCAAAGAAGCATTCAACTATCTTCACCATGTACAC
CCAGAGATGAAGGACAAATTACCAAGCACTTTCCTACAATCGTTAAAAGA
CTTTTTCGATCGCTGCCATGAATTAACACTTTTGCTATTCAAACTCCTGG
CAATCTCATTGGACGTCAACGATTCAGATTACTTTCCAAACGCACATCAA
AACATAGGCTTTCTTGGTAACACAACAGCATTGAGATCTTTATATTATCC
AGGTGTTGATTCTAAAGAGATTCTTCCTGAACAAATTAGGTGTGGTGAAC
ATACAGACTATGGAACGTTAACTTTGCTTTTCCCAAAAGCTGAAGGTCTA
GAGGTTAAATCACCATCAGGGAATTTCATCAAAGCGAAATTGATCGAAGG
AACAATTATAGTGAATGCAGCTGATCTTTTAGAACGTTGGTCAAGTGGAC
GAAtcaaatctactttacatcgtgTTTCCTTACCAAAAGATACAAACCAA
CCAAGACAATCGATTGCATTCTTTGTTAACCCAGATAACGAAACTTTGGT
GGAATGCCTCGATGGTTCAAATACTTGCAAACCTATTCGTGCTTCTGATT
GGTTAACAAAGAGGTTTGGGGAGACTTTGAGTTAGAATACTCTGCTGACT
TTATAActaataatgttttacagattcCCAGGCCACCTTGCAAGCACATG
gtgggcctctataaatcgctcatacattggtttggtttattaaagttttt
ataaagtTAGAATTTTA Run BLAST on NCBI transcript from alignment at sc0000102:44801..46776+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010060 ID=TCONS_00010060|Name=TCONS_00010060|organism=Clytia hemisphaerica|type=transcript|length=1976bp|location=Sequence derived from alignment at sc0000102:44801..46776+ (Clytia hemisphaerica)
ATATAATGGTAGAAGAAAACTTTCCAATCATAGATATTTCATCACTGGTA
CAAACTCAATGTCAAGATGAACCCATTTTACAAGAAGCAGCCAATCAATT
GATGGATGGTTTTAGTAAATGGGGATTCATTTATTTGAAAGGTCATCCTA
TTCCTGAAGAATCAATCGCAACATTATTCAAAGAAtctgaaaatttcttt
acacaGCCTCTAGCAACTAAAAAAGAACTCTCAGTCGATATCAACGATAC
TGATAATATTTCTGGTTACACTCCTTATAAAATGGAATCATTTGATTCAT
CCAAACCGTTCGATCTCAAAGAAGCATTCAACTATCTTCACCATGTACAC
CCAGAGATGAAGGACAAATTACCAAGCACTTTCCTACAATCGTTAAAAGA
CTTTTTCGATCGCTGCCATGAATTAACACTTTTGCTATTCAAACTCCTGG
CAATCTCATTGGACGTCAACGATTCAGATTACTTTCCAAACGCACATCAA
AACATAGGCTTTCTTGGTAACACAACAGCATTGAGATCTTTATATTATCC
AGGTGTTGATTCTAAAGAGATTCTTCCTGAACAAATTAGGTGTGGTGAAC
ATACAGACTATGGAACGTTAACTTTGCTTTTCCCAAAAGCTGAAGGTCTA
GAGGTAAATATAATCAGCTTTTTCGAGAACCAAGAGAATCCTACTGTATT
GATGCTTTCAAGTGAGGCTCCGCTGTTCCTTTTATTTCTTGATTGTTTGG
CTGGAGTTTTATTTTTAAGCCGTTCTTAACTGCTCTCGGGTACcaaatag
ccggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcggggggggggggttggaaa
aaatctcggggagggggttggaataagaatgtcctgggtggaaaattttc
gaaaaattaaatagcggcggggacggctattaagtaccccaAAGTAATTT
TCTTTACTCGAGAGCGTATAAGTACCTACTTGGTCGCCCATGTTTGAAAT
TGTAATCTTACATCTTACATCATCAATTTTACATCATAATCTTACAGATG
TTCTTGTGCTTAGAATTGATCAATTGAGCCTCATGAGCCTCGTTTTCTAT
TGAAGAGCCCCCTCCCCCATCGGACCTTcgattcacgcaatcacgcaaag
ttttttcgcaattcacgcaatatttgttcacgcaaagctttccaattcac
gcatttacgcaagtcaaaaagcccattcacgcattcatgcaaacCGCTAG
GGCTCCCATCGAAACTGTTCTTAACTTCAATTTGAATAGGTATTCATTGT
ATGGAGATTACTAGGGCACTTACGGTttgtatttctatttctatcgtATT
TTGATTAAGTTTTCTAAAGCTCAATATACAACATACAAAAACGGCCTTTT
TGGACGCGCTCTGAACTGTCTGGGGAACAAGATTGCATAAGCATTAgcat
tttgtcatatttttttcGGTCAATTCATTATTGACGTATATTCTTACTTA
TCTATCTGTCAGGTTAAATCACCATCAGGGAATTTCATCAAAGCGAAATT
GATCGAAGGAACAATTATAGTGAATGCAGCTGATCTTTTAGAACGTTGGT
CAAGTGGACGAAtcaaatctactttacatcgtgTTTCCTTACCAAAAGAT
ACAAACCAACCAAGACAATCGATTGCATTCTTTGTTAACCCAGATAACGA
AACTTTGGTGGAATGCCTCGATGGTTCAAATACTTGCAAACCTATTCGTG
CTTCTGATTGGTTAACAAAGAGGTTTGGGGAGACTTTGAGTTAGAATACT
CTGCTGACTTTATAActaataatgttttacagattcCCAGGCCACCTTGC
AAGCACATGgtgggcctctataaatcgctcatacattggtttggtttatt
aaagtttttataaagtTAGAATTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010060-exon-sc0000102-1491911889:44801..45453 | TCONS_00010060-exon-sc0000102-1491911889:44801..45453 | Clytia hemisphaerica | exon |
| TCONS_00010060-exon-sc0000102-1510915933:44801..45453 | TCONS_00010060-exon-sc0000102-1510915933:44801..45453 | Clytia hemisphaerica | exon |
| TCONS_00010060-exon-sc0000102-1575043694:44801..45453 | TCONS_00010060-exon-sc0000102-1575043694:44801..45453 | Clytia hemisphaerica | exon |
| TCONS_00010060-exon-sc0000102-1491911889:46363..46776 | TCONS_00010060-exon-sc0000102-1491911889:46363..46776 | Clytia hemisphaerica | exon |
| TCONS_00010060-exon-sc0000102-1510915933:46363..46776 | TCONS_00010060-exon-sc0000102-1510915933:46363..46776 | Clytia hemisphaerica | exon |
| TCONS_00010060-exon-sc0000102-1575043694:46363..46776 | TCONS_00010060-exon-sc0000102-1575043694:46363..46776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:44801..46776 + |
Blast
The following BLAST results are available for this feature:
|
