TCONS_00010072 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010072
Unique Name	TCONS_00010072
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1730

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000102:207831..217649+
coding sequence from alignment at sc0000102:207831..217649+

transcript sequence

>TCONS_00010072 ID=TCONS_00010072|Name=TCONS_00010072|organism=Clytia hemisphaerica|type=transcript|length=1730bp
ggggaaaaagaaaaagaaaatgaataccATAGTAGGAATCACCTTCCTAT
GTACATTAATCAGGGGAATCGCCTCAAAGAGTGATGCTTTCACTTCGATA
CACGATATTAAACAAATTTTACACAAAGAACGAGTTCTTACCAGATATCT
AAATCTCGCTATCGAAGCGGAAAAAGAAAGGTTAGGTGAACTTGAAGGGA
TGAGAGATTCGATGAAAATGAAGTTACTGAATCTTAATATATCATCAATG
GACGACTACGTTGGAAACCCTTTGAATGCATTGCACACTATAAGAAGATT
TACAGCAGACTGGAACGAAATTACAAATACTTTAAATACAACCCGAGTGC
AAGAGTTCTTTAATGAATGGGATAGAAATGTCAAATTACCAACACTTGAA
GATCAAAAAGGTGCTGTCAGTGGTATATTGAGACTTCAAAACTTCTACAA
AATAAATACAAGAAACGTCTCTAGAGGTTTTCTATCGAGTACAAATCCAA
TAAGTAAAACCGAAGAAATTGGCGTTGGGTTGATGTGGGCAATGGGCTAT
GAAGCATTCAAACAAAAAGAGTGGTTTTTGATGAAAGAATGGCTCGACCT
TGCATTAGAACGAATCGGAGATTTGGAACAGAGTGATGGTTGTAAGCGCA
GTTGGATTGTTGACTTCTTATCATATGCTGAATTTCAGCTTGGTGATTAT
GAAAGATCGCTTGACCTAGCATACCAGTGCTTGGAATATTCACCGGATGA
TCAAAAGCATCATAATAACATTGAGCAATGCAAAAAGAAGATATCAAAAG
GCAGGAAGAAATCGTCAACAAAACCCGTTGAACAATTAAGATATCAGTTG
TGCAGAGGAGAGGGAATGAGAAAACCGACAATAGACGAGGAACTACAAAT
GGTGTGTTGGTATAAGAATGATCAACCCATACTTCGTTATAAACCACAAA
AGGTTGAACGTCTTTGGGCAAGACCAGAAATTGTGATGTTTAGAGAATTA
TTGAATGATGAACAAACTGGAACATTGATCGATCTCAGTCTTCAAAAGtt
gGTAAGAGCAGGACTGAATGGACAAGATGTCACTTCCGAAAAATATACCA
ACTCTCGAGTGGCCAAACATGCCTGGCTTAGTATGAAGGAGTCACCAATC
ATCAGAAACATGGGAAAACGTGCTCAAGCAATGACTAACCTGAATATGAA
ATATGCAGAGCATTTACAAATAGCAAATTATGGTATAGGGGGACACTACG
ACGCACACTATGATTATCAAACTGGTGAAAATGTTTTCCCAGACCTGAAA
ACGGGAAACAGAATAGCAACATTAATGTACTATTTATCAGATGTTGAAGC
AGGAGGTGGCACAGCTTTCACTTTTGGTAAAACGACCGTTTACCCATCTA
AGGGAGACGCAGTGTTCTGGTGGAATTTGAAGCAAAATGGAAAAGTTGAT
GAATCATCAAAACATGCAGGATGTCCTGTTCTCATGGGACAAAAGTGGAt
tGCTAACTGGTGGATACATGAGTATGGACAAGAATTTCGAAGACCGTGTC
CACTTGATAAAACATTGTAATGTGGTCAATGAGATAATCCGGGAAATCAT
TATTTGTTAGAAATGGCAATATGTATAGAACTAAAACATTCTACCGGAGC
CACGAGGaaacttttcttattttttctaaattatttcgtccctttctcaa
aaaaaaaactttcccaAAATTTGTTACTCG

Run BLAST on NCBI

protein sequence of TCONS_00010072-protein

>TCONS_00010072-protein ID=TCONS_00010072-protein|Name=TCONS_00010072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
GKKKKKMNTIVGITFLCTLIRGIASKSDAFTSIHDIKQILHKERVLTRYL
NLAIEAEKERLGELEGMRDSMKMKLLNLNISSMDDYVGNPLNALHTIRRF
TADWNEITNTLNTTRVQEFFNEWDRNVKLPTLEDQKGAVSGILRLQNFYK
INTRNVSRGFLSSTNPISKTEEIGVGLMWAMGYEAFKQKEWFLMKEWLDL
ALERIGDLEQSDGCKRSWIVDFLSYAEFQLGDYERSLDLAYQCLEYSPDD
QKHHNNIEQCKKKISKGRKKSSTKPVEQLRYQLCRGEGMRKPTIDEELQM
VCWYKNDQPILRYKPQKVERLWARPEIVMFRELLNDEQTGTLIDLSLQKL
VRAGLNGQDVTSEKYTNSRVAKHAWLSMKESPIIRNMGKRAQAMTNLNMK
YAEHLQIANYGIGGHYDAHYDYQTGENVFPDLKTGNRIATLMYYLSDVEA
GGGTAFTFGKTTVYPSKGDAVFWWNLKQNGKVDESSKHAGCPVLMGQKWI
ANWWIHEYGQEFRRPCPLDKTL

Run BLAST on NCBI

transcript from alignment at sc0000102:207831..217649+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010072 ID=TCONS_00010072|Name=TCONS_00010072|organism=Clytia hemisphaerica|type=transcript|length=9819bp|location=Sequence derived from alignment at sc0000102:207831..217649+ (Clytia hemisphaerica)
ggggaaaaagaaaaagaaaatgaataccATAGTAGGAATCACCTTCCTAT
GTACATTAATCAGGGGAATCGCCTCAAAGAGTGATGCTTTCACTTCGATA
CACGATATTAAACAAATTTTACACAAAGAACGAGTTCTTACCAGATATCT
AAATCTCGCTATCGAAGCGGAAAAAGAAAGGTTAGGTGAACTTGAAGGGA
TGAGAGATTCGATGAAAATGAAGTTACTGAATCTTAATATATCATCAATG
GACGACTACGTTGGAAACCCTTTGAATGCATTGCACACTATAAGAAGATT
TACAGCAGACTGGAACGAAATTACAAATACTTTAAATACAACCCGAGTGC
AAGGTATAGGATActtatcaaaagttttttttcacatgACGAAAGTCTGG
CCTCCATTCTAAATCTAagatcaatacaccttttcgaccgtagtcgtgcg
gtcaggcgcgtgtcaCTAagttatttaattatccccctcaactcgatcca
atccttttttgacacatttttctattgtctttaggtgcgaaaaaaggact
ggggcGAAAGCGGAAAAATAATGTCCGTGCagtaattggcggctacggtc
gaaaaggtgtattctgcCTCAAAGTAAAAAGGAACGAAAAAGAGCCGTAC
AGGAAATAGTTGAAATCAAAGTTGAAATAGTGGTCTGGAGAAATTGCTGG
CTTTTCTCAGTTTCAAGATTGTATatgcatatgccgacatgagcattttc
gatttctttgccgatttcgggatttgccgacatgggcactttccatttct
ttgccgatgtcgggatttgccgacatgggcactttccattcctttgccgc
aaaatttaacacttctacaaagattttgtattaaatggtttgaaatgaaa
aaagataacagttttaaaagcttttctatgttgaaaaataactattcaac
aatgttcaactcaaaattatagtccttggctgatacttcatatattattc
agaaaatggAGTCAAAATCggtcgaaccttctttttttcccgtggcaaaa
taggtcgaaccttaaaaaatacgaacggcagttaaagggaTAGACTAGCT
ATAAAAaagatcaaaagttttttctctaGCTTAAATACCGGATGATAAGA
GGTTATTAATAAGAGGCCCTCTTTAACTTGCGAATTCTTTTAGAGTTCTT
TAATGAATGGGATAGAAATGTCAAATTACCAACACTTGAAGATCAAAAAG
GTGCTGTCAGTGGTATATTGAGACTTCAAAACTTCTACAAAATAAATACA
AGAAACGTCTCTAGAGGTAATACAATttaattgaaaatctttttgcacTT
TCATAATTTCGTCCCTTTAAAGTAGTGAACCTCCCTTTCCCCCTACGAAA
ATTTTTCAACTATatggaattttcaattttcaattttcactaattttggA
GGTTTAAATGACAATCCTCTTACGAAATAggaaataagaaataaaaagac
CCCCGTACGGGAATGTTTAAAAACCACACTACTCCCTAGGGTAAAAACTA
TGATGGGCTAATGAGCCTCCTCCcatcgagtttaaagcccaaattggcta
gagtagaatctctaaccattcccaggcaagaaaaagtgaagccacttatt
tcccatccagaacgcaccTAGAACACGCCTTAATCATGACAacagattgt
atctagcggtttctttgtttttgaggactgcattctTTGAAATCTAGCCG
tagattttaatttcaatctggcttttgtgtaaaaaccacgcgcaggCGTt
aaaataagtggtttcatttcccatccaggagtctcgagtctagcaattca
ggcttggaagtcaatgccTCCTCCCTCTCCCTCGAGTTCATTACTGAAGC
ATTGTGTATATTATTATCGTCCCAGCCCTCCTGTTTAGTTACCACGATTA
TTAACTAAATTATTAAGTAAACATGATAGTAGTGTTCTTAGAGTcgtaat
aattaatttttctagGTTTTCTATCGAGTACAAATCCAATAAGTAAAACC
GAAGAAATTGGCGTTGGGTTGATGTGGGCAATGGGCTATGAAGCATTCAA
ACAAAAAGAGTGGTTTTTGATGAAAGAATGGCTCGACCTTGCATTAGAAC
GAATCGGAGATTTGGAACAGAGTGATGGTTGTAAGCGCAGTTGGATTGTT
GACTTCTTATCATATGCTGAATTTCAGGTGATGATGAAATCcgaattttt
tgaatattttttgcataaaactAACGCTCTAtgatttgattttcaaaggG
AATAGGGCtttcatcgaataatggagcgtatcgaatagtagagcgtcgtt
tataagCGTTTCTCATTGACGgtgtatttcaaaattatcGAGTAATGGAG
CATATTTAataatagaacgtcgaattaaagagcgtcaactgtacagAAGA
GCAATATAACCGAGCATTCGTTGACGCCTTCGTCAGAACCTCAAATCCTT
GCATGTTTCTTGTTTCATTCAGTTAAGTTTTGTTCATTGTGGCTGCCTAG
CCATTGGCCGGTTGCAAGCGCATTTGGATCATTGATATCTCAAAACATAA
GTGTACCTGTTGAATAGAGAGACTGAAGGGAAACTTTTAGATTACAGTTT
TTGTCCGGTGGCGAAATGGCCCTTTTTGCTTCAACCTTTACAAGAAGTAT
CTAGGTTATTCTCTAAATCAGTGTTTGCCGAACTTGAGCATTATGTGAAG
CATTAGAGAATTTAAGGGCTACGATCATCATGGTCTTTGGCCAATGTTCC
ATAGAAGATTTCCCCCAGATTTGCCAGCTCCCCATACTTGTCAAGGTTAA
CCAAGACAGCTCCTGGACTATTGGCAGACTAGTCATcaacaaaaatcttt
aaaatctggAGCATTCTAGAAACTACTGTTTTAGCAGGTTTCATTGTGAT
CAAGGGGTTTCAACGTATCTTTGTCTTTTGTTTTATAGCTTGGTGATTAT
GAAAGATCGCTTGACCTAGCATACCAGTGCTTGGAATATTGTAAGAAAGA
GAGCCTAGATATCTACTCTGTATTTCATAATTCTGATGTTTACTACTAGA
TGTTTGTTAACCCAGGGTCAGTAAATTCGTAGCTATGAATAATAATGGAA
TGTATAACAAGCTGTTCttaagttgttgttgttgaccGAAATTAATCTCG
CGTAGGTACTGTTTCaataaaaatccataaaatggggggggtgATTTTGA
GGTGGCGATTACGTCATCTCATCGATGtcgaaattttcaccaaagatgcc
aaTTTATATTTGATGCACACTTGCAAAATTTCCAGTTtttggataaatat
ttcaaaatttgaatatggatGTGTTATAGTTCTAAAATATTACCACAGCT
ACAattaactctctctaattcgaatctctgctattaaaatcattttataa
ttcgaactaaaatatggTCCTCTCAGCTATAGAAATTAGCATAAATTAGC
AttaatctttctctaattcgaagaaaattccaGGTCCctcgaagatcgaa
ttagagagagtcatcTGTATCTTTCTTTTAGCACCGGATGATCAAAAGCA
TCATAATAACATTGAGCAATGCAAAAAGAAGATATCAAAAGGCAGGAAGA
AATCGTCAACAAAACCCGTTGAACAATTAAGATATCAGTTGTGCAGAGGA
GAGGGAATGAGAAAACCGGTAAGTCTATATAGAAAGAAATatagaagaaa
atattttgtggATAGTTCCTATCGCAGAAAAGACATCGTTAAAAGCTGCA
ATTTATTTTGCTTATACcaaattctaaaaaagaattctCAAACTAACCGA
AAATCATTTGGTAAAAATATTCGTGTTTAAAAGATTTCGTCACCCAAACt
attttttcgtcacttttaaccctttaagtgccacttttttctaagttttt
ttaacgaaaatctcttgttcaaactttaaaggcttatatctccggatcta
gaaggagttagtaGCTCGTTTATAGTTCggtttttgcttgaccatgaagc
ccaatccaattcctacgagttataccaaaaatgacgatttctaacttaaa
actgggcattacaggagggcctCAATCTCCTACATaacccatgtctgata
tatacgacattgacacttaaagggttaactgGCGAATTTTCTAACGATAA
GTATGTCTAcgtcactgaaaaaaaaatgcaaagacCGTAGTCTAGTTTAA
ATACCTTATAGGGAAAAACttcatcggggaaaattttcgtcggtaaaaat
tcgtcacttgctggtagttggtaaacgcattaaggccgggggaaattttc
gtcggggagaatattcgtcacttgtccaaaatttcgccgtcacttttccc
cgacgaataAGGTATGCAAGATTGAGAACGGGGAATTACGGCCGTCGTTC
TGAATAGCAAGTTAGCCGCAGAAGGCACTAAATACAACTCGATGGTTAGT
CAAAATATGATACTTTAATGGAATAAGTTTTTgcgaggattaaattttgc
ggatttcctAATGGAAAATTGGAAAGGTCCTATCCGAGAAATATTTTTgg
tcaaaacagaaaaaatgtcaGATAATTACTTTCAAAAGGTTAactgacat
caaaaaagtttagaGTTGCGATAGTAAAGtaaagtttaaaaattgaaaag
tataTCACACTTTCCCGTTTCAGACAATAGACGAGGAACTACAAATGGTG
TGTTGGTATAAGAATGATCAACCCATACTTCGTTATAAACCACAAAAGGT
TGAACGTCTTTGGGCAAGACCAGAAATTGTGATGTTTAGAGAATTATTGA
ATGATGAACAAACTGGAACATTGATCGATCTCAGTCTTCAAAAGGTAACC
CTTAacaccttaagggaactaattttcttttttttgtcgcGAAAGCCGCA
ACAATTAGTTCCCACGAATTAccaattttgccatttttcatcaaaagatt
tgaaaaaatgaaagaaatgtgtccaaaatagggcaaaagcacgaaaatta
gtagaccttatcggagtttttgatttctctaaaaaaacgttgcattgtgg
gattgtttcgagtgtattaaaATAGAATTCCCTtaaggaattcctaagag
atttccattgtaatacactcgaaacaatcccacaatgcatcgctttttta
gaaaaatcaaaaactccgataaggtctattcccgcgaaatgcgaaaattg
tGATATCGCTTTTGTTTGTATTGATAAACATTTGGACGACGCAAAAGGCT
CATAAAACCTATTAGAATCAAACCTAGAAACGATGAAGATCAAACCTAAA
AACGATGAAGGATACTTAACTGATTCTATACCNCGGACGACGCAAAAGGC
TTATAAAACCTATTAGAATCAAACCTAGAAACGATGAAGGATACTTAACT
GATTCTATATCATGTTAGACTAttttcagacgttacggttccactccgtt
ccgaaacgaaacggtctcaacacaagtgtgaacgtcaaaaaagaagacgt
tacaaaacaaaacagatcgaaacggttttgcaccacttttttcatcggag
cAGAACTACTCCGAAACGTTCCGTAACctatatgaacacactcgatccgt
aacgaaaatcgtaccggagcgaaacggaacagtaacgtgtgaacatggtc
ttaagcTTGTAATAAGTATGACTTCCTCCCTAAATTGCGTAttgacaaaa
aacttttaattttcagttgGTAAGAGCAGGACTGAATGGACAAGATGTCA
CTTCCGAAAAATATACCAACTCTCGAGTGGCCAAACATGCCTGGCTTAGT
ATGAAGGAGTCACCAATCATCAGAAACATGGGAAAACGTGCTCAAGCAAT
GACTAACCTGAATATGAAATATGCAGGTATAAAAAATCCTCGCTAATTCG
ACTCTCTTTTAATCGAATCTATCTATGGAGGTTTTTTACATGTTTTGTCA
GTGATATTCACCATTATGGAAGAAAGCGTTCGAGGAAAATAAGAGGGGAA
TAAGTGTGGTTTTGGAATCCTACTGGTaaaaaccactgacctttatatat
ccatggaccaagctatatccgccatctttgatcgaagggATATATAAACA
GTGgtaaactagccgtattgtataagggttgcgaagcgatccagactcta
cctcaattcgcaagttgctagcaaaaatAAGAGCCACTTTGATAAAACCC
TAAAAGAGACAGGGTCTTAAGCCTTATAATACCCCAAACACACCATAAAA
AACCACAGcagcacaacacccgccgccccGCGAAACGCTCTTTCTTTCCT
TCTCTTAGTTCTTCtaatgtaaatggtgccttaaaaaATCGAACGACATT
CGTCGAACGTTCGAACATTTTGTTATTCTAATCGTCTGttgaaatcatca
aaagtaaacaaaagcaaaaaaaatctacaaaagatggcttgttgttgGTT
CTTGGCCAGTTTTGATTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNttttgcaaggtaagtttagtTCACTTA
AAAGAGCACCCCTCCCGCCCGCGCGACCTGCAAAAACTTCTCATTtttat
tgaccttatttgatacttaatagttacttttaaaagtcaaggaatgatga
agatcctttctgtaataagtattatttttatcaatatttcgtcgcatcaa
aataaaaaagctccaagtctatttttgttgttttgagaaaaaagacttta
aattatttttcattgaatcatgtaaaaaaccattaacatttgaaatattt
ttgtgttaaaaaggCCTTAAGTCCAAAATTGTTTCCACGCTGGACTTGAG
GCTTTTTTTGCCCTAAACTGATGTGACTTAATGCTTTTTtaccttgaaaa
taaaaaattcttatttttctaaaaaatggggtgtaaagcatcggtatggt
cataactcaattttcccaaaaaaatggacttaaagcttttttaatttGAT
GCGACGATTTATTTTAGAGCATTTACAAATAGCAAATTATGGTATAGGGG
GACACTACGACGCACACTATGATTATCAAACTGGTGAAAATGTTTTCCCA
GACCTGAAAACGGGAAACAGAATAGCAACATTAATGTACTATGTAAGTAT
AAATCATTCCCATATACTCTTCTATTATATTCgtatctttctataattcg
accTTATTCTCAGTTCCCGTCATGTACTCTCTTAAAATACTCTATGTAAT
TCAAATCTCTGTTATTCGggcaaataagattccccgtttTTGAGTTCGAA
TTACTGAGAGtcaaattgggcttttccagaaaaaaaccgtacaccccttg
ttgaggagtccatttccattccaagggggtatggtttgaaatgcagtgga
attccatagcagtagacaaaaatccgtcataaataagtggaattccatgg
gggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNATaagtggaattccatgggggt
aatgaatgaaaatctgtaaaaattcggaattccagaggggtatgatccta
aaattgcctggaattccaagggggtggTAATTTACAAAAGGTTGGAGCTC
CTCAACACggggtgtacggtttttttctggaaaagcccattgtcaTGACA
TGGATTATAAACGGCTTTAATGTACGGGTCCTGAGGGATGGTCCCTTACA
AAGAATTACCTCCATCcggaaaaataattaaaaaataaaacaattttttc
tttaatagTTATCAGATGTTGAAGCAGGAGGTGGCACAGCTTTCACTTTT
GGTAAAACGACCGTTTACCCATCTAAGGTAAGAAAACAGGCTATGTTTAT
TTTTCCGAACTAAGATTCAACTGGCAACTTTCCAACGAAAAAAGACTAAA
AGATTAAGGTAAGTCAAGGAAAAGTCTGCAGGATCGATGTCCGAGAAAGA
TTGATGAATAGAGAGtttttcgaataaaaaaattaacctTAATTATAACC
TTTAGTGTCCTTATGTAGAAGACCCCTAAAATGTAGATCatgtttgattg
gttcattATTTGAACAGTGGGTTCGACTGACAATTCCTGGATTAATAACA
TACAGGCGTGATTTATCGTTGTTTTAACTATGTAGTTAAAAGTCTCCGca
ataaacaaagaggaatctAAATATTGGGGGCAAACTATCCGGATCGGGGT
TGTAGATGGTATAATTTGTCGTTCCTTTTGAATTTTCTCGTTCTATGTGG
TCCTTTTTGTCTATTCTTAGTAAATGCTGGATTCTTAAGAATAAGCCAAT
CTAAATGACGACCTAAAGTTTTGGCACTCTTTACcgtaaatgaaaataaa
atctacaaATACTAGATATTCATAAAATTTACGATGTAATGTTTTATGTG
GAAGCACAAAATAGCCCGGATAATTGCCACTAGTtatattgtttaaattc
aaaattattggTAAACACCCGGGTATTTTTATGGGTGCCTCCGTATTAAA
CAATACGTCATGAAAATCACAATTTAGAGTGACATCCATGCAATTGGTAc
tacaatctcggtcaaaatatattgagaattttggctaattcctcgttttt
agcaacTTAAAGTTCGGGGGAGAAAGTCGcgtttgggctaattgataaat
ttattcaaatatttcaattcgagaggggtttatagacttccaggctatat
tctgagccctattggatcattcttggacttttggatcctcagatcctaag
gtcataagtcttaagtctagcgttaaaactcagagttaaaactctaccct
tcgaacctaatttaaatcgtttgtggttgtaagattttgtgggaatttcc
cttttttctcaaatattacaacTTTGATTGTAGGGAGACGCAGTGTTCTG
GTGGAATTTGAAGCAAAATGGAAAAGTTGATGAATCATCAAAACATGCAG
GATGTCCTGTTCTCATGGGACAAAAGTGGAGTAGgtaatttttgtaagaa
aactgAGATTGAGTGAGAAGGGAGTTTGTCCCGGGAGATGTATCGTTGAA
AAgcttaatttttttcaacagTGCCAGTGTTATGATTAGGGTTCCATAAA
GACGACATTAAAAAATTCTCACCCTTGTAGTGTCTGGACCTTTTTTGTAA
AGATTTAGGaataaatagaaaattttgagaGCATTTAGCCCAAGGGATAC
TAGTTTGATTTATATCAAGTTTCTGGATAACAAAGATACATGCAGATCAT
TATAATGTTGCATTTCAtatatcttttttatattttagttGCTAACTGGT
GGATACATGAGTATGGACAAGAATTTCGAAGACCGTGTCCACTTGATAAA
ACATTGTAATGTGGTCAATGAGATAATCCGGGAAATCATTATTTGTTAGA
AATGGCAATATGTATAGAACTAAAACATTCTACCGGAGCCACGAGGaaac
ttttcttattttttctaaattatttcgtccctttctcaaaaaaaaaactt
tcccaAAATTTGTTACTCG

Coding sequence (CDS) from alignment at sc0000102:207831..217649+

>TCONS_00010072 ID=TCONS_00010072|Name=TCONS_00010072|organism=Clytia hemisphaerica|type=CDS|length=1569bp|location=Sequence derived from alignment at sc0000102:207831..217649+ (Clytia hemisphaerica)
gggaaaaagaaaaagaaaatgaataccATAGTAGGAATCACCTTCCTATG
TACATTAATCAGGGGAATCGCCTCAAAGAGTGATGCTTTCACTTCGATAC
ACGATATTAAACAAATTTTACACAAAGAACGAGTTCTTACCAGATATCTA
AATCTCGCTATCGAAGCGGAAAAAGAAAGGTTAGGTGAACTTGAAGGGAT
GAGAGATTCGATGAAAATGAAGTTACTGAATCTTAATATATCATCAATGG
ACGACTACGTTGGAAACCCTTTGAATGCATTGCACACTATAAGAAGATTT
ACAGCAGACTGGAACGAAATTACAAATACTTTAAATACAACCCGAGTGCA
AGAGTTCTTTAATGAATGGGATAGAAATGTCAAATTACCAACACTTGAAG
ATCAAAAAGGTGCTGTCAGTGGTATATTGAGACTTCAAAACTTCTACAAA
ATAAATACAAGAAACGTCTCTAGAGGTTTTCTATCGAGTACAAATCCAAT
AAGTAAAACCGAAGAAATTGGCGTTGGGTTGATGTGGGCAATGGGCTATG
AAGCATTCAAACAAAAAGAGTGGTTTTTGATGAAAGAATGGCTCGACCTT
GCATTAGAACGAATCGGAGATTTGGAACAGAGTGATGGTTGTAAGCGCAG
TTGGATTGTTGACTTCTTATCATATGCTGAATTTCAGCTTGGTGATTATG
AAAGATCGCTTGACCTAGCATACCAGTGCTTGGAATATTCACCGGATGAT
CAAAAGCATCATAATAACATTGAGCAATGCAAAAAGAAGATATCAAAAGG
CAGGAAGAAATCGTCAACAAAACCCGTTGAACAATTAAGATATCAGTTGT
GCAGAGGAGAGGGAATGAGAAAACCGACAATAGACGAGGAACTACAAATG
GTGTGTTGGTATAAGAATGATCAACCCATACTTCGTTATAAACCACAAAA
GGTTGAACGTCTTTGGGCAAGACCAGAAATTGTGATGTTTAGAGAATTAT
TGAATGATGAACAAACTGGAACATTGATCGATCTCAGTCTTCAAAAGttg
GTAAGAGCAGGACTGAATGGACAAGATGTCACTTCCGAAAAATATACCAA
CTCTCGAGTGGCCAAACATGCCTGGCTTAGTATGAAGGAGTCACCAATCA
TCAGAAACATGGGAAAACGTGCTCAAGCAATGACTAACCTGAATATGAAA
TATGCAGAGCATTTACAAATAGCAAATTATGGTATAGGGGGACACTACGA
CGCACACTATGATTATCAAACTGGTGAAAATGTTTTCCCAGACCTGAAAA
CGGGAAACAGAATAGCAACATTAATGTACTATTTATCAGATGTTGAAGCA
GGAGGTGGCACAGCTTTCACTTTTGGTAAAACGACCGTTTACCCATCTAA
GGGAGACGCAGTGTTCTGGTGGAATTTGAAGCAAAATGGAAAAGTTGATG
AATCATCAAAACATGCAGGATGTCCTGTTCTCATGGGACAAAAGTGGAtt
GCTAACTGGTGGATACATGAGTATGGACAAGAATTTCGAAGACCGTGTCC
ACTTGATAAAACATTGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005649	XLOC_005649	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010072-protein	TCONS_00010072-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000102	supercontig	sc0000102:207831..217649 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0233253	0.0454916	0	0	1.03242	1.27937	0.164045	0.138706	2.26615	1.2359	0.176535	1.37519	1.98381	3.08449	1.97657	8.28064	1.28544	0.969159	1.95883	1.8422	0.496148	0.528008	0.0802329	0.145887	0.275476	0.37996	0.0639672	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006620	Pro_4_hyd_alph
IPR005123	Oxoglu/Fe-dep_dioxygenase
IPR011990	TPR-like_helical_dom
IPR013547	Pro_4_hyd_alph_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0031418	L-ascorbic acid binding
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491	oxidoreductase activity
GO:0005515	protein binding
GO:0004656	procollagen-proline 4-dioxygenase activity
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0031418	L-ascorbic acid binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0004656	procollagen-proline 4-dioxygenase activity
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00010072 vs. Swiss-Prot (Human)
Match: P4HA1 (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 1.100e-80
Identity = 168/515 (32.62%), Postives = 284/515 (55.15%), Query Frame = 2

Query:   89 FTSIHDIKQILHKERVLTRYLNLAIEAEKERLGELEGMRDSMKMKLLNLNISSMDDYVGNPLNALHTIRRFTADWNEITNTLNTTRVQEFFNEWD-RNVKLPTLEDQKGAVSGILRLQNFYKINTRNVSRGFLSSTNPISKTEEIGVGLMWAMGYEAFKQKEWFLMKEWLDLALERIGDLEQSDGCKRSWIVDFLSYAEFQLGDYERSLDLAYQCLEYSPDDQKHHNNIEQCXXXXXXXXXXXXXX---------------------PVEQLRYQLCRGEGMRKPTIDEELQMVCWYK--NDQPILRYKPQKVERLWARPEIVMFRELLNDEQTGTLIDLSLQKLVRAGLNGQDVTSEKYTNSRVAKHAWLSMKESPIIRNMGKRAQAMTNLNMKYAEHLQIANYGIGGHYDAHYDYQTGE--NVFPDLKTGNRIATLMYYLSDVEXXXXXXXXXXXXXVYPSKGDAVFWWNLKQNGKVDESSKHAGCPVLMGQKWIANWWIHEYGQEFRRPCPL 1555
            FTSI  +  ++H E+ L   L   I+AE+++L +++   + +  +L +      + +VG+P+NA   ++R   +W+E+ N +       F +    +    P  EDQ GA   +LRLQ+ Y ++T  +S+G L     +     +     + +G  A+ + +++  + W++ AL ++ + E S   K S ++D+LSYA +Q GD +++L L  + LE  P+ Q+ + N++  +  ++K +  + +                      P  Q    LCRGEG+ K T   + ++ C Y   N  P     P K E  W +P I+ F ++++D +   + DL+  +L RA ++       +  + R++K AWLS  E+P++  +  R Q +T L++  AE LQ+ANYG+GG Y+ H+D+   +  + F +L TGNRIAT ++Y+SDV AGG T F     +V+P KG AVFW+NL  +G+ D S++HA CPVL+G KW++N W+HE GQEFRRPC L
Sbjct:   22 FTSIGQMTDLIHTEKDLVTSLKDYIKAEEDKLEQIKKWAEKLD-RLTSTATKDPEGFVGHPVNAFKLMKRLNTEWSELENLVLKDMSDGFISNLTIQRQYFPNDEDQVGAAKALLRLQDTYNLDTDTISKGNLPG---VKHKSFLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVS-VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEKDVNKSASDDQSDQKTTPKKKGVAVDYLPERQKYEMLCRGEGI-KMTPRRQKKLFCRYHDGNRNPKFILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRPCTL 530

The following BLAST results are available for this feature:

BLAST of TCONS_00010072 vs. Swiss-Prot (Human)

BLAST of TCONS_00010072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
P4HA1	1.100e-80	32.62	Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie...	[more]

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TCONS_00010072 (transcript) - C. hemisphaerica