TCONS_00010075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010075
Unique NameTCONS_00010075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1950

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010075 ID=TCONS_00010075|Name=TCONS_00010075|organism=Clytia hemisphaerica|type=transcript|length=1950bp
CCAGTTTCTTTTGCCAGTTCGAGAAACAATTCTTTTAAGTATTTTTTGCG
ACAATCATGCGACAATACATAGACCTTTTTATAAACTACGTCACGagcat
cacttgcctcgtattcaaacaatttccatgttgatcatatcccttgagat
attaaatgattttttttaatgaacagGGAAAGTGGTTGTAATAAAATCAT
CTGGGAGTtcatcaccatggcaataattttaaaacaaggcaagtgatgtt
cgtgacgtgatttatgaaaaggcctacactttttttttataagaacaatt
ttataagaacaatgaggctcaaaaatgccaaaaaataagaataatttaag
aacaatggagaggctgaagttatagagagttatagcaaaaagaatcactg
gtttcgaaaatcctctaaatagtaaagtaaatagccaaaacttatttttt
accttagaaaaaataagaacaaaataaggctcaaagtgccaaaaaaataa
gaacagccgagcctcagcaaaaatttactgttttttataataaaaaaagt
gtataccATACCATATGTGGGTATAAATATGTGGGTATTTAATAAAGATT
CAGAAGTTGCGAAGACAAATGCCTTATTAATTACAGTAATCATTCAAACT
TGTAAGAAGTAATTTGACACGGACGTTTATTATGAAAAAAAGTGTCTTGt
agtttttaagttttatttttttatttgactgaCATCACAGTGTAAGAAAT
ATTATGGAAAGAATGTACTTGTTTTCTCTAGTAGACCCTAAGAGAGATTT
TCTACGTATACTCAGTCCACATTGTTGTTTCCCTCGCAGGTTAAGGTTTT
AAATGGTACATTATCTAGCCGAGGTGACTTTTTTCGCACCGAGGCTCGAA
GTTTTGGCCGACCAAGTAAGAATGAACACTAATAATAGCAACGAGGCACA
AGAGATCCATGCCGAACTAATCCATGATGAAGATGTTTTGAAAGTAAGGA
ATCAGTCAATTGATGATGAACTTCACAATCTATCCATCATTCATCCATAT
GGATACACTTTACCAGAAAGATATGTCCAATACCATCAAAGGATACAAGA
ATTTGATATCCTCGATGATGATGTCTTCATTGCAACTCATCAAAAATGTG
ggaCAACGTGGATGACAGAGCTTGTGTGGCGTGTAAGAAATGATCCTGAA
TTCAAAGAAACGAAAGCTTCACTGAAAGAACGTGTTCCATTCTTAGATGA
CACCATTATTGACCATAAAGATCGTTTATCAGTTTCCTCTTTCGAGCTCA
CAGAGCAATTAAATCGACCAAGAACCATCAAGACGCATCTTCCTTTTGAC
CTTTTACCAAGACAACTACAACAGAACAAAGCCAAGATCGTATGTGTTAT
CAGGAACCCAAGAGACACATGCCAGTCTCTTCTCAACCATTACCGAGTCC
TCGAGAAGTACACCGGGGACTTTGAAACCATTGCTAACGTTTTCTTAAAA
GATTTGGGATTCAACTGGGGACCTTTCTTTAAGAATGTATTGAGTTACTG
GGAGCGACGTCACCAAGATAATATACTTCTAGTATCTTATGAAGAAATGC
AACAAGATTTGGGCTTGGTGATCAAGAAAGTTGCCAAGTTTGTTGATGTC
TCAATGGATGAGAACCAAGTTATATCGTTGGTCGAGAAGTTATCCTTCAA
AAGCATGAAACAGAACGCAGTCAACAGTTACAAAGGAGGACCACATGATT
TGAGCAAGCTATACAACAAAGGAAAAACAGGaagttggaaagatattttt
acaCCTAGTAtgatcgaaaagtttgaaaaatgggaAGAAAAATGGTTGAC
AGATACAGATTTGACATTCACCTACGAATAGGACAtattagatttttaaa
aaaactagaaAGGGAActgtttaaaatgaaattttatgaaataaaatgag
Run BLAST on NCBI

transcript from alignment at sc0000102:304432..311585+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010075 ID=TCONS_00010075|Name=TCONS_00010075|organism=Clytia hemisphaerica|type=transcript|length=7154bp|location=Sequence derived from alignment at sc0000102:304432..311585+ (Clytia hemisphaerica)
CCAGTTTCTTTTGCCAGTTCGAGAAACAATTCTTTTAAGTATTTTTTGCG
ACAATCATGCGACAATACATAGACCTTTTTATAAACTACGTCACGagcat
cacttgcctcgtattcaaacaatttccatgttgatcatatcccttgagat
attaaatgattttttttaatgaacagGGAAAGTGGTTGTAATAAAATCAT
CTGGGAGTtcatcaccatggcaataattttaaaacaaggcaagtgatgtt
cgtgacgtgatttatgaaaaggcctacactttttttttataagaacaatt
ttataagaacaatgaggctcaaaaatgccaaaaaataagaataatttaag
aacaatggagaggctgaagttatagagagttatagcaaaaagaatcactg
gtttcgaaaatcctctaaatagtaaagtaaatagccaaaacttatttttt
accttagaaaaaataagaacaaaataaggctcaaagtgccaaaaaaataa
gaacagccgagcctcagcaaaaatttactgttttttataataaaaaaagt
gtataccATACCATATGTGGGTATAAATATGTGGGTATTTAATAAAGATT
CAGAAGTTGCGAAGACAAATGCCTTATTAATTACAGTAATCATTCAAACT
TGTAAGAAGTAATTTGACACGGACGTTTATTATGAAAAAAAGTGTCTTGt
agtttttaagttttatttttttatttgactgaCATCACAGTGTAAGAAAT
ATTATGGAAAGAATGTACTTGTTTTCTCTAGTAGACCCTAAGAGAGATTT
TCTACGTATACTCAGTCCACATTGTTGTTTCCCTCGCAGGTTAAGGTTTT
AAATGGTACATTATCTAGCCGAGGTGACTTTTTTCGCACCGAGGCTCGAA
GTTTTGGCCGACCAAGTAAGGTAAGGTAAGGCTTTAACTTTAAGCGGGAT
TtctgatgttttgaaaaatagtcAGAAATCTAGTATCTTATCGGTTCCGG
ACGAATGTTCCGGCATGCGAATTATTGAGCATGCGCATAAAAGGAGAGAA
GTTATCACTCGTGTCATCTCGCGTCAAACGTAAGGTCGCGTTCCAAAATG
GCAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTGCGTTACGAAGATAGTCCAAATGT
CTCCAGAAATGACATGTGTCTACAATTTATTGTTTGAATCCTTTTGATAA
CTGATAAGGAGGAAAAGTTAAGATAGACATTTTTCAACCAGGTTCTTGTA
TTGATAGTGTCACCAGTAGACTAAAGCATCAATATAGCTATTGTTTTATT
CTACCTAGTctgagatccatactctctaacAAAACATTACCCAGTGAGGT
GAGAGTACGGTCGTAATACTCGGCCTACTACTGTCTTTCCTCTGTTTTCC
GTTAGGTCCGGTACACActtcgaaatttttttatatagcAGTGTAGAGTC
ACTCAGCTATATTCTATCACCCTCCAGCGGTGCTGTGATACAGAAGTGTC
TGAAGACTGAATAGGCTAACTCAGGTACGGGAAGATAAAACACGTTTCTC
TCTAATAAGCCCCTATTTTAGTTGCTTATCATCTAAATGTGGCAGTGTTA
TTTAATTGTTATAGAATGAACACTAATAATAGCAACGAGGCACAAGAGAT
CCATGCCGAACTAATCCATGATGAAGATGTTTTGAAAGTAAGGAATCAGT
CAATTGATGATGAACTTCACAATCTATCCATCATTCATCCATATGGATAC
ACTTTACCAGAAAGATATGTCCAATACCATCAAAGGATACAAGAATTTGA
TATCCTCGATGATGATGTCTTCATTGCAACTCATCAAAAATGTGGTAAGA
CTGTACCTATATTTACAATTCATACAACAGGAGCTTAAAGGGAAGTAAGG
CATCAGGTTAGTCTCAATGATATATCCTTGCCTCCTCACAGAATCTTTGA
GAACGATCTTGTCacaattaatttcaaaaattgacttcaaatatGTTTGA
ATTTCTTCTCAGTAAGAGtggatttttataaatttcagtattttgatact
taaaaaagtttaaaatcagctgttttaagcaaaataaGGTTTAGGCTTTA
CCCTAAAAGAGTTACTTTCAATTTAGCTatttctctcaaaattttgaagg
gaCAACGTGGATGACAGAGCTTGTGTGGCGTGTAAGAAATGATCCTGAAT
TCAAAGAAACGAAAGCTTCACTGAAAGAACGTGTTCCATTCTTAGAGTAA
GTCATTCGTTGCAAAATTGAGCATTtgattaaagtctgtctcgaaataat
ttgcagctggagacaaaaatggctgtaacttttgatagaattcgaatcaa
gttgcgattaagtgcttgttaaaaagatNTGATGATGCGGCGAAAATTCA
ATTTCGATCTACGAGATACGAAGAAGTCTTAAAGATCTTCTTGAGTCTCC
GTAACGACTGCCCAAGCGGCTACGATGGAATAACTATCAAATACCTCAAA
CCGGTCAGTGACTACTACAATTAATAAAACCCAGTATCTTTCCGGATAAG
ttgtaggctgctggcatccactaactgATTCGTGATCCTTATAGATTCTA
CTACTAACTGAGATTTTGTAGAGATTCAGACTACCTAGACAAGTGGAAAA
CCCTACGCTTGCAAAGAACTTTCGACCCGTTTCTTTTCTACCTGTACTGT
CAAAGGTTTTCACAGAAAATCATCCTCATACATATCCTTGAGCTCATCGA
GTCATCCTTATACAATCAAACGCAATCCGGTTTCCAGAAGGGCCATTCTA
CATCGACCATTCTCCTTAAATTGAGGAGATGCCATCAAGAAATCTAtgaa
caaaaatgaagaaacgTAGAATTGTGAGGgataatagcgaggttaagcaa
gaaacTATCTACAACGTACAGAATCTACGACGTGAGTTTTTCGCAAGCTA
GTGCCCGAATCTCAAGGCTAAGCTCTATCTCGTAAAGTTTGACCTGTACG
TTGTAATTTGGAGCCTGGGTTTATTATAAATATGCCAAATCTCACGTCAT
AGATTCCGTACGCCGTAGATAAGCTTCTTGCTTAACTCGCTAATGACTAA
AAGGAGAATTCTCAATtgctttccattttttttttattatattaagCGTC
TAATTTTGTAATAATTTCAGCACATGCGATCGTTTCTTTCTCATTATCAG
CATTGACAACTCGTAGTTTCAGCCAGTATTTAccctaaaagaaaaagaaa
atattttgataaaatttacaccgcttttcttttttgataatatttcacTC
GGAactatctttttaacgagcacaaaatcgtaacttgatttgaattctat
caaaagttacagccatttttttctccagctgcaaattatttcgagacaga
ctttaggtaGGCAAATCGTCTACTGCATACTCTAACGGGGAgggtttgaa
aatgttttgaaaattaatgAGAAGGGGGGAGACGTTTATTCGGGACCTAG
AGTAACAGGCTTTTGCTTAAACTCTAATGAACAAGCTTTTATACATTAAG
TATAAAATGTTGTATTgttctaaaaacattttaatcaaGATTCAGTAAAT
CAGATGCATGGATGGCAACCTCCTGTCTCATATTTGTTAGCCAGTGAACG
TAATATAAAGAAGATAGATGTCAATAGGGATGGAAAATCTGATGTCTTCA
ATGGTTAGGGAATTCTAACAATGTTTCTGTCCTCACAAAACCAATCCTCC
TAGCATCAcggtatttgttttttttaagaaagtttgATGTAATAGGACGG
TTTTTCCGAAAAGTATTGTGATTGATCGAGGTTGTCAGATGAGTCTTAAG
ATTGTTGGTTCAACcctcagccgggtcataccaaagattctcaaaatggt
acttaatgcctctctgcttgatgctcagcaatttaaaaaaagaatcaagg
gtaagtggagaaattcaGGGAGAAAGAGCGGCACCCTCCCCTTCCTTCCG
GTAGATAGCtattgaaagaggagccttcgggtcacctccgactgcggtcg
cagacttacttacttaaggTAAAATTTAAACTTATTTATATTATAGTGAC
ACCATTATTGACCATAAAGATCGTTTATCAGTTTCCTCTTTCGAGCTCAC
AGAGCAATTAAATCGACCAAGAACCATCAAGACGCATCTTCCTTTTGACC
TTTTACCAAGACAACTACAACAGAACAAAGCCAAGGCTAGTACCATTGTA
ATTTTAGGTTAATTTCTACTCGGTCGGACAAAAAAATCTAGATTGCTTCC
TTCAGGATCTGTCACAaaccaataataaaaaaattacctcTTCAGTCCTC
CCTCGGGTCGCGTTCTGGTTTTCGTACCAAAAAAAATTGCATAATAAAGC
AATACTACTTGTCTCAAAATGTCTCTGGttttagaatattttaagactta
aaaaattgagaaagattttaaattttattctttTGTCATCTTTCCTAGGA
TTATCATATACAGTTGACGATacactccattattcgataaaatataaagt
ccccgtcaacaagaaactctcgtaaacgacgctcccttattcgaaaAGCT
CCCGATAATCCAAtcccccttgaagatcgaattagggAGCGTCAACTCTA
CAGAGAAAACATTATTACAGAGACCGTTCATTATAATTTTCAGATCGTAT
GTGTTATCAGGAACCCAAGAGACACATGCCAGTCTCTTCTCAACCATTAC
CGAGTCCTCGAGAAGTACACCGGGGACTTTGAAACCATTGCTAACGTTTT
CTTAAAAGATTTGGGATTCAACTGGGGACCTTTCTTTAAGAATGTATTGA
GTTACTGGGAGCGACGTCACCAAGATAATATACTTCTAGTATCTTATGAA
GAAATGCAACAAGATTTGGGCTTGGTGATCAAGAAAGTTGCCAAGTTTGT
TGATGTCTCAATGGATGAGAACCAAGTTATATCGTTGGTCGAGAAGTTAT
CCTTCAAAAGCATGAAACAGAACGCAGTCAACAGTTACAAAGGAGTAAGT
TCTTTTACCACCTGAATATTATCGGAGTAATTTCGCTTCGCTAGATTAAC
TTTATCAATTTGGTCATTAGTCATTAAAAATAGTCCGCTAACTTACTACA
TTTTAAAGGGATAGTCatatgttttagatttttcggTCGGTATTTATTTC
CAGTCCTTTTATGCAAAGCCAATGTAAAcacattttcagaatttgtcaTT
TGGAAGCTAGATAGGCTAAACGATTTTAAATCGGTTAAGCTTCACAAAAC
TCATTATATTTCGAAACTTAAATGCTTTAATGAAACTAACCCTCTTATCT
AcgtaatttcaaaatttagtcaAGGTCTATTTCTTTTACAGGGACCACAT
GATTTGAGCAAGCTATACAACAAAGGAAAAACAGGaagttggaaagatat
ttttacaCCTAGTAtgatcgaaaagtttgaaaaatgggaAGAAAAATGGT
TGACAGATACAGATTTGACATTCACCTACGAATAGGACAtattagatttt
taaaaaaactagaaAGGGAActgtttaaaatgaaattttatgaaataaaa
tgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005651XLOC_005651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010075-exon-sc0000102-1491911889:304432..305351TCONS_00010075-exon-sc0000102-1491911889:304432..305351Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1510915933:304432..305351TCONS_00010075-exon-sc0000102-1510915933:304432..305351Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1575043694:304432..305351TCONS_00010075-exon-sc0000102-1575043694:304432..305351Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1491911889:307596..307825TCONS_00010075-exon-sc0000102-1491911889:307596..307825Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1510915933:307596..307825TCONS_00010075-exon-sc0000102-1510915933:307596..307825Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1575043694:307596..307825TCONS_00010075-exon-sc0000102-1575043694:307596..307825Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1491911889:308131..308227TCONS_00010075-exon-sc0000102-1491911889:308131..308227Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1510915933:308131..308227TCONS_00010075-exon-sc0000102-1510915933:308131..308227Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1575043694:308131..308227TCONS_00010075-exon-sc0000102-1575043694:308131..308227Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1491911889:310078..310216TCONS_00010075-exon-sc0000102-1491911889:310078..310216Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1510915933:310078..310216TCONS_00010075-exon-sc0000102-1510915933:310078..310216Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1575043694:310078..310216TCONS_00010075-exon-sc0000102-1575043694:310078..310216Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1491911889:310675..311025TCONS_00010075-exon-sc0000102-1491911889:310675..311025Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1510915933:310675..311025TCONS_00010075-exon-sc0000102-1510915933:310675..311025Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1575043694:310675..311025TCONS_00010075-exon-sc0000102-1575043694:310675..311025Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1491911889:311373..311585TCONS_00010075-exon-sc0000102-1491911889:311373..311585Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1510915933:311373..311585TCONS_00010075-exon-sc0000102-1510915933:311373..311585Clytia hemisphaericaexon
TCONS_00010075-exon-sc0000102-1575043694:311373..311585TCONS_00010075-exon-sc0000102-1575043694:311373..311585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:304432..311585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15906	1.1198	0.743016	0.991246	0.791259	0.895675	0.223373	0.257492	0.00186804	0.31841	0.353392	0.192597	3.26963	2.92641	0.819172	0.850315	0.378473	1.1973	0.585587	0.283792	0.320971	0.835833	0.487077	1.02805	0	0	2.10355	1.06575	1.59797	1.47521
Blast
[Close]
BLAST of TCONS_00010075 vs. Swiss-Prot (Human)
Match: ST1C4 (Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 8.973e-38
Identity = 96/297 (32.32%), Postives = 151/297 (50.84%), Query Frame = 1 
Query: 1015 DELHNLSIIHPYGYTLPERYVQYHQRIQEFDILDDDVFIATHQKCGTTWMTELVWRVRNDPEFKETK-ASLKERVPFLDDTIIDHKDRLSVSSFELTEQLNRPRTIKTHLPFDLLPRQLQQNKAKIVCVIRNPRDTCQSLLNHYRVLEKY---TGDFETIANVFLKDLGFNWGPFFKNVLSYWERRHQDNILLVSYEEMQQDLGLVIKKVAKFVDVSMDENQVISLVEKLSFKSMKQNAVNSYKGGP-----HDLSKLYNKGKTGSWKDIFTPSMIEKFEKWEEKWLTDTDLTFTYE 1878
            D    LS+ +  G   P        +I  F    DD+ I+T+ K GTTW  E+V  ++N+ + +++K A   +R PFL+  I         S  E    +  PR +KTHLPF LLP  L +   KI+ V RNP+D   S   H++ + K     G +E     FL      WG + ++V  +WE + +  IL + YE+M+++    I+K+A+F+   +D+  +  +V   SF  MKQN + +Y   P     H +S    KG  G WK  FT +  E+F++  +K +TDT LTF ++
Sbjct:   12 DGTKRLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPS-----LGSGLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYY-HFQRMNKALPAPGTWEEYFETFLAG-KVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKMTDTRLTFHFQ 301
The following BLAST results are available for this feature:
BLAST of TCONS_00010075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1C48.973e-3832.32Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE... [more]
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