TCONS_00010127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010127
Unique NameTCONS_00010127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010127 ID=TCONS_00010127|Name=TCONS_00010127|organism=Clytia hemisphaerica|type=transcript|length=236bp
CAAATATTGATGGCAACAATAATAGCCCTAATAATAATGGACTTTCGAAC
GGGCCAGCCTCGTTTCCATGTTCTGGCCAatcatcaggaaatggttgcCA
ACAGCAACCAACGCAACCTCCTGCAACTACagtgaaagcgaaagtgaaag
tgccgCTGAGTAAAAGACCGAACGATGAAGAATGCAGAATGAAAAAATTG
GCGAAAAGAGTAAAATGTCATTCATGCAAAACTCAC
Run BLAST on NCBI

transcript from alignment at sc0000102:320697..320932

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010127 ID=TCONS_00010127|Name=TCONS_00010127|organism=Clytia hemisphaerica|type=transcript|length=236bp|location=Sequence derived from alignment at sc0000102:320697..320932 (Clytia hemisphaerica)
GTGAGTTTTGCATGAATGACATTTTACTCTTTTCGCCAATTTTTTCATTC
TGCATTCTTCATCGTTCGGTCTTTTACTCAGcggcactttcactttcgct
ttcactGTAGTTGCAGGAGGTTGCGTTGGTTGCTGTTGgcaaccatttcc
tgatgatTGGCCAGAACATGGAAACGAGGCTGGCCCGTTCGAAAGTCCAT
TATTATTAGGGCTATTATTGTTGCCATCAATATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005681XLOC_005681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010127-exon-sc0000102-1491911889:320697..320932TCONS_00010127-exon-sc0000102-1491911889:320697..320932Clytia hemisphaericaexon
TCONS_00010127-exon-sc0000102-1510915933:320697..320932TCONS_00010127-exon-sc0000102-1510915933:320697..320932Clytia hemisphaericaexon
TCONS_00010127-exon-sc0000102-1575043694:320697..320932TCONS_00010127-exon-sc0000102-1575043694:320697..320932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:320697..320932 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.02224	3.69985	5.77293	0.808352	0	1.94372	1.91659	8.29368	10.6007	6.53641	14.0291	2.16034	2.95238	0	0	0.92747	1.35716	1.09987	1.99989	5.14959	1.83835	1.31534	0	4.25883	1.08477
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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