TCONS_00010132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010132
Unique NameTCONS_00010132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010132 ID=TCONS_00010132|Name=TCONS_00010132|organism=Clytia hemisphaerica|type=transcript|length=455bp
TCTCAAACGAGAGAGAAAAGTCCACACTCTTTGGCAATCTTTGTCTTCTT
AAGGGTATTGAAAAATATAGGGCAGTCAGTATCACTGAAGATCTAACACC
CGACGAAAGAAaccaattaaaaaaactttcgaacCAAGCTAAAGAACGTA
ACGCAAATAATAactctgaaaataaaaagtggAGAGTGCGGGGAAATTCA
AAAAACGGATTCTTCCTCATCAAGATCAAGACGGAAACCCAAATAGAGAA
TGCAACCAAGAAAGTTGTGTTCAAAAATCTCACtcaaacacaaaaaacaa
aagaacaataaatcaaaaaagtcTGAATCAAGTCCCTCGCCATGATCTAA
CAATGAATGGTATCAAGTTTTATTACTGCAACGCTGATATTCTAACATTA
GGCAAAAAGAAAGAACTTATACAAAACGTAGAGAAACAACAACCACACAT
TGTTG
Run BLAST on NCBI

protein sequence of TCONS_00010132-protein

>TCONS_00010132-protein ID=TCONS_00010132-protein|Name=TCONS_00010132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
SNEREKSTLFGNLCLLKGIEKYRAVSITEDLTPDERNQLKKLSNQAKERN
ANNNSENKKWRVRGNSKNGFFLIKIKTETQIENATKKVVFKNLTQTQKTK
EQ
Run BLAST on NCBI

transcript from alignment at sc0000102:362395..362849

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010132 ID=TCONS_00010132|Name=TCONS_00010132|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at sc0000102:362395..362849 (Clytia hemisphaerica)
CAACAATGTGTGGTTGTTGTTTCTCTACGTTTTGTATAAGTTCTTTCTTT
TTGCCTAATGTTAGAATATCAGCGTTGCAGTAATAAAACTTGATACCATT
CATTGTTAGATCATGGCGAGGGACTTGATTCAgacttttttgatttattg
ttcttttgttttttgtgtttgaGTGAGATTTTTGAACACAACTTTCTTGG
TTGCATTCTCTATTTGGGTTTCCGTCTTGATCTTGATGAGGAAGAATCCG
TTTTTTGAATTTCCCCGCACTCTccactttttattttcagagtTATTATT
TGCGTTACGTTCTTTAGCTTGgttcgaaagtttttttaattggtTTCTTT
CGTCGGGTGTTAGATCTTCAGTGATACTGACTGCCCTATATTTTTCAATA
CCCTTAAGAAGACAAAGATTGCCAAAGAGTGTGGACTTTTCTCTCTCGTT
TGAGA

Coding sequence (CDS) from alignment at sc0000102:362395..362849

>TCONS_00010132 ID=TCONS_00010132|Name=TCONS_00010132|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000102:362395..362849 (Clytia hemisphaerica)
ttattgttcttttgttttttgtgtttgaGTGAGATTTTTGAACACAACTT
TCTTGGTTGCATTCTCTATTTGGGTTTCCGTCTTGATCTTGATGAGGAAG
AATCCGTTTTTTGAATTTCCCCGCACTCTccactttttattttcagagtT
ATTATTTGCGTTACGTTCTTTAGCTTGgttcgaaagtttttttaattggt
TTCTTTCGTCGGGTGTTAGATCTTCAGTGATACTGACTGCCCTATATTTT
TCAATACCCTTAAGAAGACAAAGATTGCCAAAGAGTGTGGACTTTTCTCT
CTCGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005686XLOC_005686Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010132-proteinTCONS_00010132-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010132-exon-sc0000102-1491911889:362395..362849TCONS_00010132-exon-sc0000102-1491911889:362395..362849Clytia hemisphaericaexon
TCONS_00010132-exon-sc0000102-1510915933:362395..362849TCONS_00010132-exon-sc0000102-1510915933:362395..362849Clytia hemisphaericaexon
TCONS_00010132-exon-sc0000102-1575043694:362395..362849TCONS_00010132-exon-sc0000102-1575043694:362395..362849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:362395..362849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52222	2.40961	2.56847	2.89769	0.388973	0.153686	0.435056	0.520752	0.24306	0.903208	0	0.288146	0.287746	0	0.245676	0.897806	0.324793	0.221935	0.306615	0.409724	0.623457	0.940589	0.603237	0.150334	0	0	0.593256	0	0.320143	0.326175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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