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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010133 ID=TCONS_00010133|Name=TCONS_00010133|organism=Clytia hemisphaerica|type=transcript|length=2090bp
NAAAATCAAGCTCGACAAATTCTGTGGGTATGAATCACCTATTGACTTTT
ATACTTTCAAATCGAACTTTGAGAAATTATATATCAAATCAACTCCTTCA
AGCTACTTACCTGATCTTCTCAAAAACAATCATCTTGGTGAGCCAGCCAT
CACTCTCGTTCGAAGCCTTGACAATATCGATGATATTTGGCAAAGTCTAA
AAGTAGCTTTTGTGGATTAGAGAACTCTTCTAACGAAAAGACTTCAGACA
CTCAGTAAATCTGAAATCGCCAAAAGTCGTGATCCTGAAAAACTCGTCAT
CACACTCAGCAAGTTCTCAAATATCATTCCTGAAGTGATGCAACTTGCTC
ACAAACATCAAATTGAAGACAATCTTTACTTTGGAGAGTCACTTCCACGA
ATTTACCAACAACTCGGTGAGGGTCGTCTCACAAGATTCTTGTCAAGCAT
CAGCGATGATGAATTCACTCCAAAACAAACTTGGGGAAAGTTGCTAACTT
TTCTTGAGAAAGAGGAAAAGCTGAATCAACAAAAAGTCAGCAATCAAACT
CGACGTACTAACGAGAAGAAGGATCCACCTCAAACAAATCAAATTCCAAA
GAAGAAGACATTCCTTGGCAACCAAAACGATCCAGTCAAATGTCAACTAT
GTGGAGAAGCTCCATCATCATCAGAGCACATGGTATCAAATGGTCCAAAT
GGTTCCAAGATCGTCCAATACTATACATACAAAGATTTCGTCGAGAAGAA
ACCTGCAGCTCGTCTAGCAATCATCAATAAAAAGGGATTCTGCACTCAAT
GTCTTCTGCCAGGTGCTGACGCATCCAAAGAAAAGCACTCTGATGGTCGA
TGCCAGAGGGACTTTACATGTCCACACCCCAGTCACCACCAGTATACCAT
CAAGAAACATGTCCTATTATGCTAAGAGCACAAGGACaatcaatcaaatc
aagatATTCTAGATCGGTTCAAGTCTAGATTCATGCGAAGTTCACACCTA
CCAGATTTCGTGAAGCAAATCAAACTGTCATTCCACTCTTTATTCAAGTC
TGATGTATCAGCCACCGAAAAGGGAATCTATCTTCTTCAGAAAATTACTG
TCAATGGCAATAGAGTCAACATCTTTTACGACAATGGTTGTTCTGATTTC
ATACTATCAACCAAAGCTGTTCAACTTCTTGGATCATCAGCCATCAAATT
CAGTAGCGAATCAATCAACATTGGAGGTGTTGGAAACACAGCCACTGTAT
CTTCAGGAAGCTACAAAGTCAATCTTCCACTTCAGGATGGAAGAATCGTC
ACCCTCTCAGGAATCTGCTTGGATCAAATCACATCAAACTTTCCCATCTA
CCCACTCATTGAGGTTGAGAAGGACATAACTACCCACTACAAATCATCAG
GAGGAATTGATCCTCTACCCAAACTACCACCTCATGTTGGAGGAGAAGTC
CACTTGATGATTGGTGTCAAGTATCTGCGCTATCATCCAAAGCTTGTTCA
CCAATTGGATTCTGGATTATCTATATATAAATCTTCATTCATCAACTCAG
ACGGAGGAAGAGGTGTCATCGGAGGTCCGCATAAACTCTTTACTGAAATT
CACAACAGCTTCTTTACGTCATCAACAGCCTTCTTTATTAATAGAGGAAG
GTACTTATTCAACAATCCATCAATACTTGGTTATCAGGAAGAACAACTGC
TTCTTGACGATCAGAATCACTCAGATGTCCATCTCACACATCAACAGCGA
CTGTTCGAACAAGTCGAGTCTACTGGTTGTGAAGTGTCCTACAGATGTCC
ATCTTGCAGAACGTGCAAGGATTGCAAGCACTTCGACCAATACCAAACAA
TCAGCTTGAGGGAGGAAGTGGAGCAAAGCCTAATCAATGCATCTGTCACC
ATCAATCTGGAAACATCAACTACAACAGCCTCACTTCCATTCATCTCAAG
CCTAAATCGCCTTGTTGCCAACAAAGATCGTGCAATGAAAACCTTCAAGT
AACAACTCAGAAAGCTGAACAACCCATCCAATATCAAAGACAAGCAAGAC
ATTTTGGATTCGGAATCGAAGCTTCAGCAACTCAATTATG Run BLAST on NCBI protein sequence of TCONS_00010133-protein >TCONS_00010133-protein ID=TCONS_00010133-protein|Name=TCONS_00010133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MRSSHLPDFVKQIKLSFHSLFKSDVSATEKGIYLLQKITVNGNRVNIFYD
NGCSDFILSTKAVQLLGSSAIKFSSESINIGGVGNTATVSSGSYKVNLPL
QDGRIVTLSGICLDQITSNFPIYPLIEVEKDITTHYKSSGGIDPLPKLPP
HVGGEVHLMIGVKYLRYHPKLVHQLDSGLSIYKSSFINSDGGRGVIGGPH
KLFTEIHNSFFTSSTAFFINRGRYLFNNPSILGYQEEQLLLDDQNHSDVH
LTHQQRLFEQVESTGCEVSYRCPSCRTCKDCKHFDQYQTISLREEVEQSL
INASVTINLETSTTTASLPFISSLNRLVANKDRAMKTFK Run BLAST on NCBI transcript from alignment at sc0000102:377357..379446 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010133 ID=TCONS_00010133|Name=TCONS_00010133|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at sc0000102:377357..379446 (Clytia hemisphaerica)
CATAATTGAGTTGCTGAAGCTTCGATTCCGAATCCAAAATGTCTTGCTTG
TCTTTGATATTGGATGGGTTGTTCAGCTTTCTGAGTTGTTACTTGAAGGT
TTTCATTGCACGATCTTTGTTGGCAACAAGGCGATTTAGGCTTGAGATGA
ATGGAAGTGAGGCTGTTGTAGTTGATGTTTCCAGATTGATGGTGACAGAT
GCATTGATTAGGCTTTGCTCCACTTCCTCCCTCAAGCTGATTGTTTGGTA
TTGGTCGAAGTGCTTGCAATCCTTGCACGTTCTGCAAGATGGACATCTGT
AGGACACTTCACAACCAGTAGACTCGACTTGTTCGAACAGTCGCTGTTGA
TGTGTGAGATGGACATCTGAGTGATTCTGATCGTCAAGAAGCAGTTGTTC
TTCCTGATAACCAAGTATTGATGGATTGTTGAATAAGTACCTTCCTCTAT
TAATAAAGAAGGCTGTTGATGACGTAAAGAAGCTGTTGTGAATTTCAGTA
AAGAGTTTATGCGGACCTCCGATGACACCTCTTCCTCCGTCTGAGTTGAT
GAATGAAGATTTATATATAGATAATCCAGAATCCAATTGGTGAACAAGCT
TTGGATGATAGCGCAGATACTTGACACCAATCATCAAGTGGACTTCTCCT
CCAACATGAGGTGGTAGTTTGGGTAGAGGATCAATTCCTCCTGATGATTT
GTAGTGGGTAGTTATGTCCTTCTCAACCTCAATGAGTGGGTAGATGGGAA
AGTTTGATGTGATTTGATCCAAGCAGATTCCTGAGAGGGTGACGATTCTT
CCATCCTGAAGTGGAAGATTGACTTTGTAGCTTCCTGAAGATACAGTGGC
TGTGTTTCCAACACCTCCAATGTTGATTGATTCGCTACTGAATTTGATGG
CTGATGATCCAAGAAGTTGAACAGCTTTGGTTGATAGTATGAAATCAGAA
CAACCATTGTCGTAAAAGATGTTGACTCTATTGCCATTGACAGTAATTTT
CTGAAGAAGATAGATTCCCTTTTCGGTGGCTGATACATCAGACTTGAATA
AAGAGTGGAATGACAGTTTGATTTGCTTCACGAAATCTGGTAGGTGTGAA
CTTCGCATGAATCTAGACTTGAACCGATCTAGAATatcttgatttgattg
attGTCCTTGTGCTCTTAGCATAATAGGACATGTTTCTTGATGGTATACT
GGTGGTGACTGGGGTGTGGACATGTAAAGTCCCTCTGGCATCGACCATCA
GAGTGCTTTTCTTTGGATGCGTCAGCACCTGGCAGAAGACATTGAGTGCA
GAATCCCTTTTTATTGATGATTGCTAGACGAGCTGCAGGTTTCTTCTCGA
CGAAATCTTTGTATGTATAGTATTGGACGATCTTGGAACCATTTGGACCA
TTTGATACCATGTGCTCTGATGATGATGGAGCTTCTCCACATAGTTGACA
TTTGACTGGATCGTTTTGGTTGCCAAGGAATGTCTTCTTCTTTGGAATTT
GATTTGTTTGAGGTGGATCCTTCTTCTCGTTAGTACGTCGAGTTTGATTG
CTGACTTTTTGTTGATTCAGCTTTTCCTCTTTCTCAAGAAAAGTTAGCAA
CTTTCCCCAAGTTTGTTTTGGAGTGAATTCATCATCGCTGATGCTTGACA
AGAATCTTGTGAGACGACCCTCACCGAGTTGTTGGTAAATTCGTGGAAGT
GACTCTCCAAAGTAAAGATTGTCTTCAATTTGATGTTTGTGAGCAAGTTG
CATCACTTCAGGAATGATATTTGAGAACTTGCTGAGTGTGATGACGAGTT
TTTCAGGATCACGACTTTTGGCGATTTCAGATTTACTGAGTGTCTGAAGT
CTTTTCGTTAGAAGAGTTCTCTAATCCACAAAAGCTACTTTTAGACTTTG
CCAAATATCATCGATATTGTCAAGGCTTCGAACGAGAGTGATGGCTGGCT
CACCAAGATGATTGTTTTTGAGAAGATCAGGTAAGTAGCTTGAAGGAGTT
GATTTGATATATAATTTCTCAAAGTTCGATTTGAAAGTATAAAAGTCAAT
AGGTGATTCATACCCACAGAATTTGTCGAGCTTGATTTTN Coding sequence (CDS) from alignment at sc0000102:377357..379446 >TCONS_00010133 ID=TCONS_00010133|Name=TCONS_00010133|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0000102:377357..379446 (Clytia hemisphaerica)
TTACTTGAAGGTTTTCATTGCACGATCTTTGTTGGCAACAAGGCGATTTA
GGCTTGAGATGAATGGAAGTGAGGCTGTTGTAGTTGATGTTTCCAGATTG
ATGGTGACAGATGCATTGATTAGGCTTTGCTCCACTTCCTCCCTCAAGCT
GATTGTTTGGTATTGGTCGAAGTGCTTGCAATCCTTGCACGTTCTGCAAG
ATGGACATCTGTAGGACACTTCACAACCAGTAGACTCGACTTGTTCGAAC
AGTCGCTGTTGATGTGTGAGATGGACATCTGAGTGATTCTGATCGTCAAG
AAGCAGTTGTTCTTCCTGATAACCAAGTATTGATGGATTGTTGAATAAGT
ACCTTCCTCTATTAATAAAGAAGGCTGTTGATGACGTAAAGAAGCTGTTG
TGAATTTCAGTAAAGAGTTTATGCGGACCTCCGATGACACCTCTTCCTCC
GTCTGAGTTGATGAATGAAGATTTATATATAGATAATCCAGAATCCAATT
GGTGAACAAGCTTTGGATGATAGCGCAGATACTTGACACCAATCATCAAG
TGGACTTCTCCTCCAACATGAGGTGGTAGTTTGGGTAGAGGATCAATTCC
TCCTGATGATTTGTAGTGGGTAGTTATGTCCTTCTCAACCTCAATGAGTG
GGTAGATGGGAAAGTTTGATGTGATTTGATCCAAGCAGATTCCTGAGAGG
GTGACGATTCTTCCATCCTGAAGTGGAAGATTGACTTTGTAGCTTCCTGA
AGATACAGTGGCTGTGTTTCCAACACCTCCAATGTTGATTGATTCGCTAC
TGAATTTGATGGCTGATGATCCAAGAAGTTGAACAGCTTTGGTTGATAGT
ATGAAATCAGAACAACCATTGTCGTAAAAGATGTTGACTCTATTGCCATT
GACAGTAATTTTCTGAAGAAGATAGATTCCCTTTTCGGTGGCTGATACAT
CAGACTTGAATAAAGAGTGGAATGACAGTTTGATTTGCTTCACGAAATCT
GGTAGGTGTGAACTTCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010133-exon-sc0000102-1491911889:377357..379446 | TCONS_00010133-exon-sc0000102-1491911889:377357..379446 | Clytia hemisphaerica | exon |
| TCONS_00010133-exon-sc0000102-1510915933:377357..379446 | TCONS_00010133-exon-sc0000102-1510915933:377357..379446 | Clytia hemisphaerica | exon |
| TCONS_00010133-exon-sc0000102-1575043694:377357..379446 | TCONS_00010133-exon-sc0000102-1575043694:377357..379446 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:377357..379446 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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