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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010143 ID=TCONS_00010143|Name=TCONS_00010143|organism=Clytia hemisphaerica|type=transcript|length=1631bp
GTTTGGGTGGTTTTGAGTTATTGCTTATtcgaaaatgacgtcatagacGC
GGGAAAATTCGTAGTGGCGCGAAATTCGAAATTTGAGGAAATGAGAGCAT
GGAAAAGCTTCTATTTAAACGTATGACCATAGAATGGTCCAAGGAATGTA
TAAAAGGTAACACCTGAagactttttcctttttcatatTCACACAGACAC
TACTTACAGCACAGGTATGTACACAATAAAATATAACACCGTAAATGTat
gtaaattttaaaaacaataagACAAAGGATGATATTTACAAAGCTAAGAA
AGTTTTTAACGCAACAAAACTGTATGTCTACGGCTTGGTACCTGACCAGC
TGCTAAGTGAAGCTTTATCTATATCTTGTAGTTCGCACCTTTTAGCACAA
AGCCATGGAGATACCAGCAAAGCCCAGCAAACTACCACCCTTGTTTTCAA
GACAAGACCGCATGACGTATCTTGTCACGTACAGTCAAGCTGATTTGTTT
CTTTGAGGAAAATTCGAATTTGGAAAACTCTTTGGCTCCAGCAGACCGCC
CCGAACCCCGGGCCAGAATCTAGGTATTGCGGGAGGTTTTAAGAGGATCA
TGTGTACCGGGTTTCGAGCAACGTTGGTTTCGCTCGGCCATTGAAATTTT
GGAGCACAACAGGATTGATGTTTAACCTATGCTCAATCGATGCGCGTTCT
TTTAGAAAAGGGTAGGGGTAAGCATCGCAATATTATGATCATTGGACCGA
AAGACTCCGGTAAGACTTTCCTTATGGACCCTATCAGATTTATattcaaa
acctttttgaacCCAGCGGATGATAAGTACACCTGGCAGGACGCTGAACA
CTGCGAAGCCATGTTCTTCAATGACTTTAGGTGGTCAAAGAGCATGATAA
GATGGAATGATCTCCTTGTTTTGCTTGAGGGTCACCCTGTTAGATTTCCT
GTCCCTAAAAATCAACGTGCCAAAGACATCCTTTTCACGCGGGACGTCCC
AATTTTTGGTACAAGCCGGTGTCGTGTGACTTATGGGAAAGATGACAATG
ATGAGGATGACAAAACAAAAGGGGTTGGAATGGAAAATGGCACGATGAAA
GTATGTTGGGTTGTTTATCATCTCCCATTTTCAATTCCAAATATTGTTGA
AATGGACCCTTGCCCAAGATGCTATGCTAATTTGGTGTTTTACGGGGATC
CCACTGCATGAAGAGTAAAGTTTATTAGTTGTTAGTGTAAATGACCTAAA
GTTAACCACACTTAACCACAGttaaccgaaaaaaaaaatcttaatttttt
tttaaaggagcACTGGTTAACTGTGGTTAACTGTGGTTAACTGTGGTTAA
CTGTGGTTAATTGTGTTTGTTAGGAACCAGAAGCGCCGTAGACCCCCCAA
ACAACAATAAAAGTTATAAATTTAGCTAATACCGCAGTCTGCCACAACGT
CGTTTCACAATCTTTAGCATGCGATTGGGCATTGATTTAATGATACGGTC
CACCATGCGCTTATCAAAGTTTTCAATTGTGCTTTTGACTCGTGCACTGA
ACtcctcaaaattttcctttgtgaTGCGGTTTTTCAAAGCATCTTCCGAT
AATTGACGTGCAAccaagttgaaaatatttt Run BLAST on NCBI protein sequence of TCONS_00010143-protein >TCONS_00010143-protein ID=TCONS_00010143-protein|Name=TCONS_00010143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MRVLLEKGRGKHRNIMIIGPKDSGKTFLMDPIRFIFKTFLNPADDKYTWQ
DAEHCEAMFFNDFRWSKSMIRWNDLLVLLEGHPVRFPVPKNQRAKDILFT
RDVPIFGTSRCRVTYGKDDNDEDDKTKGVGMENGTMKVCWVVYHLPFSIP
NIVEMDPCPRCYANLVFYGDPTA Run BLAST on NCBI transcript from alignment at sc0000102:531324..532954 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010143 ID=TCONS_00010143|Name=TCONS_00010143|organism=Clytia hemisphaerica|type=transcript|length=1631bp|location=Sequence derived from alignment at sc0000102:531324..532954 (Clytia hemisphaerica)
aaaatattttcaacttggTTGCACGTCAATTATCGGAAGATGCTTTGAAA
AACCGCAtcacaaaggaaaattttgaggaGTTCAGTGCACGAGTCAAAAG
CACAATTGAAAACTTTGATAAGCGCATGGTGGACCGTATCATTAAATCAA
TGCCCAATCGCATGCTAAAGATTGTGAAACGACGTTGTGGCAGACTGCGG
TATTAGCTAAATTTATAACTTTTATTGTTGTTTGGGGGGTCTACGGCGCT
TCTGGTTCCTAACAAACACAATTAACCACAGTTAACCACAGTTAACCACA
GTTAACCACAGTTAACCAGTgctcctttaaaaaaaaattaagattttttt
tttcggttaaCTGTGGTTAAGTGTGGTTAACTTTAGGTCATTTACACTAA
CAACTAATAAACTTTACTCTTCATGCAGTGGGATCCCCGTAAAACACCAA
ATTAGCATAGCATCTTGGGCAAGGGTCCATTTCAACAATATTTGGAATTG
AAAATGGGAGATGATAAACAACCCAACATACTTTCATCGTGCCATTTTCC
ATTCCAACCCCTTTTGTTTTGTCATCCTCATCATTGTCATCTTTCCCATA
AGTCACACGACACCGGCTTGTACCAAAAATTGGGACGTCCCGCGTGAAAA
GGATGTCTTTGGCACGTTGATTTTTAGGGACAGGAAATCTAACAGGGTGA
CCCTCAAGCAAAACAAGGAGATCATTCCATCTTATCATGCTCTTTGACCA
CCTAAAGTCATTGAAGAACATGGCTTCGCAGTGTTCAGCGTCCTGCCAGG
TGTACTTATCATCCGCTGGgttcaaaaaggttttgaatATAAATCTGATA
GGGTCCATAAGGAAAGTCTTACCGGAGTCTTTCGGTCCAATGATCATAAT
ATTGCGATGCTTACCCCTACCCTTTTCTAAAAGAACGCGCATCGATTGAG
CATAGGTTAAACATCAATCCTGTTGTGCTCCAAAATTTCAATGGCCGAGC
GAAACCAACGTTGCTCGAAACCCGGTACACATGATCCTCTTAAAACCTCC
CGCAATACCTAGATTCTGGCCCGGGGTTCGGGGCGGTCTGCTGGAGCCAA
AGAGTTTTCCAAATTCGAATTTTCCTCAAAGAAACAAATCAGCTTGACTG
TACGTGACAAGATACGTCATGCGGTCTTGTCTTGAAAACAAGGGTGGTAG
TTTGCTGGGCTTTGCTGGTATCTCCATGGCTTTGTGCTAAAAGGTGCGAA
CTACAAGATATAGATAAAGCTTCACTTAGCAGCTGGTCAGGTACCAAGCC
GTAGACATACAGTTTTGTTGCGTTAAAAACTTTCTTAGCTTTGTAAATAT
CATCCTTTGTcttattgtttttaaaatttacatACATTTACGGTGTTATA
TTTTATTGTGTACATACCTGTGCTGTAAGTAGTGTCTGTGTGAatatgaa
aaaggaaaaagtctTCAGGTGTTACCTTTTATACATTCCTTGGACCATTC
TATGGTCATACGTTTAAATAGAAGCTTTTCCATGCTCTCATTTCCTCAAA
TTTCGAATTTCGCGCCACTACGAATTTTCCCGCgtctatgacgtcatttt
cgaATAAGCAATAACTCAAAACCACCCAAAC Coding sequence (CDS) from alignment at sc0000102:531324..532954 >TCONS_00010143 ID=TCONS_00010143|Name=TCONS_00010143|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0000102:531324..532954 (Clytia hemisphaerica)
TCATGCAGTGGGATCCCCGTAAAACACCAAATTAGCATAGCATCTTGGGC
AAGGGTCCATTTCAACAATATTTGGAATTGAAAATGGGAGATGATAAACA
ACCCAACATACTTTCATCGTGCCATTTTCCATTCCAACCCCTTTTGTTTT
GTCATCCTCATCATTGTCATCTTTCCCATAAGTCACACGACACCGGCTTG
TACCAAAAATTGGGACGTCCCGCGTGAAAAGGATGTCTTTGGCACGTTGA
TTTTTAGGGACAGGAAATCTAACAGGGTGACCCTCAAGCAAAACAAGGAG
ATCATTCCATCTTATCATGCTCTTTGACCACCTAAAGTCATTGAAGAACA
TGGCTTCGCAGTGTTCAGCGTCCTGCCAGGTGTACTTATCATCCGCTGGg
ttcaaaaaggttttgaatATAAATCTGATAGGGTCCATAAGGAAAGTCTT
ACCGGAGTCTTTCGGTCCAATGATCATAATATTGCGATGCTTACCCCTAC
CCTTTTCTAAAAGAACGCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010143-exon-sc0000102-1491911889:531324..532954 | TCONS_00010143-exon-sc0000102-1491911889:531324..532954 | Clytia hemisphaerica | exon |
| TCONS_00010143-exon-sc0000102-1510915933:531324..532954 | TCONS_00010143-exon-sc0000102-1510915933:531324..532954 | Clytia hemisphaerica | exon |
| TCONS_00010143-exon-sc0000102-1575043694:531324..532954 | TCONS_00010143-exon-sc0000102-1575043694:531324..532954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:531324..532954 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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