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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010145 ID=TCONS_00010145|Name=TCONS_00010145|organism=Clytia hemisphaerica|type=transcript|length=1566bp
NATGCAACTCAAGTTGATCTTTGTGGACCATTCGATTCATACTCAGCACA
CCACAAACGCACTACAGTCAAGATATGGCTTCTCGTTTTCTGCTGTGCCA
CAACTTCAACAacaaacataaaagttatggACGATTACAGCACTCAGTCG
TTCATCCTTGGCTTCACAAGATTTTCATGTGAAGTAGGATATCCGAAAAC
CCTACTTTGCGACGCTGGCAGTCAACTCATTAGAGGCTGTCAAGACATGC
GGTTCAGCTATCTCGATGTCAAACATCGACTCTTCATCAATCATCAAGTT
GATTTCGAAGTTTGTTCTGTTGGTGCTCATAACGAACACGGCAAAGCTGA
ACGAAAGATCCGTGAAATCAATTCATCCATCAATGTTGCACACCGACAAA
AGTTATCTACACTTCAGTGGGAGACACTTGCTTCCTCTATCGCCAACAGC
ATCAATAACATGCCCTTAGCCATCAAGGGTACAACCGGAGATCTGGAAAA
CCTTGATATTCTAACGCCAAATCGCCTCAAGCTTGGTCGAAACAATGAAA
GATCGCCAGTCGAACCAGTTCAGCTTGTAAGCAATCCGAGCAAGCTTGTT
GATGAAAATTGTAAGATATTCAATTCATGGTTTGAGAATTGGCTTTTGTC
ACACGTCCCAAAATTACTGAAACAGGAGAAATGGTTTACTACGAGTCATG
AAATCAAAATTGGagatattgttttatttttgaaaaatgattcgAAAATA
TCTTCAACGTATCAGTATGGAAAGGTTGTTAATGTTGAATTTAGTTCCGA
TGGTTTGGCTCGTCATGCTAGTGTACGTTATATGAATGCTAATGAGAAAG
TATTTCGTGAGACACGTCGTTCCACACGAAATTTACTTAACATCAATCAT
GTCGATGAAGTTGATTTGTTTTATGAATTGGGAAAGAACactttaaagaa
cttttcaaaaatcaaataacATTTTTTTTTGTCTTTATGGGGGGAGTGTA
GAAAAATCAGTCAATTTTCATATTATATAATacacacaaaaaatttattc
aggttattttcattttcattaaatttatcatatttgttCAATGCAGGTCA
TTTTGTCAATGTTTACATTTATACTCAATGTAGGTCATTTTtgtcaatgt
ttacattttatactCAATGTAGGTCATTTTGgtaatgtttattttcaatg
taGGTCTGTATTTTATATATTGTTTACATTTCTACCATTTTGATGAGTTA
TCACTTTTTGGTGTCCAGTCCACATGAGGCTAGACTAGGGCTTGCATGCT
TCTTCGTGTCATTCACAATCAAGCTCACAAGGAGTAAGGAGCTCAAATTA
AAactcaaatattttcaatatgGTCAACATTCAATACTTTCAATAGTCAA
ATTCAGACTTTGAAAATCAGACAAAAATTCACAAGGCTTTCATGCTGGCA
GGCTGGTAGGTTTTGCTTatttgttttgcttttctttctgCCTTTTGCTT
TTTGCCTGTCAGTTGTGGCCATTTGTTTTCATAGCATGCTTTGGCGGCCA
TCTTGGATTTTCAGCA Run BLAST on NCBI protein sequence of TCONS_00010145-protein >TCONS_00010145-protein ID=TCONS_00010145-protein|Name=TCONS_00010145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
XATQVDLCGPFDSYSAHHKRTTVKIWLLVFCCATTSTTNIKVMDDYSTQS
FILGFTRFSCEVGYPKTLLCDAGSQLIRGCQDMRFSYLDVKHRLFINHQV
DFEVCSVGAHNEHGKAERKIREINSSINVAHRQKLSTLQWETLASSIANS
INNMPLAIKGTTGDLENLDILTPNRLKLGRNNERSPVEPVQLVSNPSKLV
DENCKIFNSWFENWLLSHVPKLLKQEKWFTTSHEIKIGDIVLFLKNDSKI
SSTYQYGKVVNVEFSSDGLARHASVRYMNANEKVFRETRRSTRNLLNINH
VDEVDLFYELGKNTLKNFSKIK Run BLAST on NCBI transcript from alignment at sc0000102:580243..581808 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010145 ID=TCONS_00010145|Name=TCONS_00010145|organism=Clytia hemisphaerica|type=transcript|length=1566bp|location=Sequence derived from alignment at sc0000102:580243..581808 (Clytia hemisphaerica)
TGCTGAAAATCCAAGATGGCCGCCAAAGCATGCTATGAAAACAAATGGCC
ACAACTGACAGGCAAAAAGCAAAAGGcagaaagaaaagcaaaacaaatAA
GCAAAACCTACCAGCCTGCCAGCATGAAAGCCTTGTGAATTTTTGTCTGA
TTTTCAAAGTCTGAATTTGACTATTGAAAGTATTGAATGTTGACcatatt
gaaaatatttgagtTTTAATTTGAGCTCCTTACTCCTTGTGAGCTTGATT
GTGAATGACACGAAGAAGCATGCAAGCCCTAGTCTAGCCTCATGTGGACT
GGACACCAAAAAGTGATAACTCATCAAAATGGTAGAAATGTAAACAATAT
ATAAAATACAGACCtacattgaaaataaacattacCAAAATGACCTACAT
TGagtataaaatgtaaacattgacaAAAATGACCTACATTGAGTATAAAT
GTAAACATTGACAAAATGACCTGCATTGaacaaatatgataaatttaatg
aaaatgaaaataacctgaataaattttttgtgtgtATTATATAATATGAA
AATTGACTGATTTTTCTACACTCCCCCCATAAAGACAAAAAAAAATgtta
tttgatttttgaaaagttctttaaagtGTTCTTTCCCAATTCATAAAACA
AATCAACTTCATCGACATGATTGATGTTAAGTAAATTTCGTGTGGAACGA
CGTGTCTCACGAAATACTTTCTCATTAGCATTCATATAACGTACACTAGC
ATGACGAGCCAAACCATCGGAACTAAATTCAACATTAACAACCTTTCCAT
ACTGATACGTTGAAGATATTTTcgaatcatttttcaaaaataaaacaata
tctCCAATTTTGATTTCATGACTCGTAGTAAACCATTTCTCCTGTTTCAG
TAATTTTGGGACGTGTGACAAAAGCCAATTCTCAAACCATGAATTGAATA
TCTTACAATTTTCATCAACAAGCTTGCTCGGATTGCTTACAAGCTGAACT
GGTTCGACTGGCGATCTTTCATTGTTTCGACCAAGCTTGAGGCGATTTGG
CGTTAGAATATCAAGGTTTTCCAGATCTCCGGTTGTACCCTTGATGGCTA
AGGGCATGTTATTGATGCTGTTGGCGATAGAGGAAGCAAGTGTCTCCCAC
TGAAGTGTAGATAACTTTTGTCGGTGTGCAACATTGATGGATGAATTGAT
TTCACGGATCTTTCGTTCAGCTTTGCCGTGTTCGTTATGAGCACCAACAG
AACAAACTTCGAAATCAACTTGATGATTGATGAAGAGTCGATGTTTGACA
TCGAGATAGCTGAACCGCATGTCTTGACAGCCTCTAATGAGTTGACTGCC
AGCGTCGCAAAGTAGGGTTTTCGGATATCCTACTTCACATGAAAATCTTG
TGAAGCCAAGGATGAACGACTGAGTGCTGTAATCGTccataacttttatg
tttgtTGTTGAAGTTGTGGCACAGCAGAAAACGAGAAGCCATATCTTGAC
TGTAGTGCGTTTGTGGTGTGCTGAGTATGAATCGAATGGTCCACAAAGAT
CAACTTGAGTTGCATN Coding sequence (CDS) from alignment at sc0000102:580243..581808 >TCONS_00010145 ID=TCONS_00010145|Name=TCONS_00010145|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at sc0000102:580243..581808 (Clytia hemisphaerica)
ttatttgatttttgaaaagttctttaaagtGTTCTTTCCCAATTCATAAA
ACAAATCAACTTCATCGACATGATTGATGTTAAGTAAATTTCGTGTGGAA
CGACGTGTCTCACGAAATACTTTCTCATTAGCATTCATATAACGTACACT
AGCATGACGAGCCAAACCATCGGAACTAAATTCAACATTAACAACCTTTC
CATACTGATACGTTGAAGATATTTTcgaatcatttttcaaaaataaaaca
atatctCCAATTTTGATTTCATGACTCGTAGTAAACCATTTCTCCTGTTT
CAGTAATTTTGGGACGTGTGACAAAAGCCAATTCTCAAACCATGAATTGA
ATATCTTACAATTTTCATCAACAAGCTTGCTCGGATTGCTTACAAGCTGA
ACTGGTTCGACTGGCGATCTTTCATTGTTTCGACCAAGCTTGAGGCGATT
TGGCGTTAGAATATCAAGGTTTTCCAGATCTCCGGTTGTACCCTTGATGG
CTAAGGGCATGTTATTGATGCTGTTGGCGATAGAGGAAGCAAGTGTCTCC
CACTGAAGTGTAGATAACTTTTGTCGGTGTGCAACATTGATGGATGAATT
GATTTCACGGATCTTTCGTTCAGCTTTGCCGTGTTCGTTATGAGCACCAA
CAGAACAAACTTCGAAATCAACTTGATGATTGATGAAGAGTCGATGTTTG
ACATCGAGATAGCTGAACCGCATGTCTTGACAGCCTCTAATGAGTTGACT
GCCAGCGTCGCAAAGTAGGGTTTTCGGATATCCTACTTCACATGAAAATC
TTGTGAAGCCAAGGATGAACGACTGAGTGCTGTAATCGTccataactttt
atgtttgtTGTTGAAGTTGTGGCACAGCAGAAAACGAGAAGCCATATCTT
GACTGTAGTGCGTTTGTGGTGTGCTGAGTATGAATCGAATGGTCCACAAA
GATCAACTTGAGTTGCATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010145-exon-sc0000102-1491911889:580243..581808 | TCONS_00010145-exon-sc0000102-1491911889:580243..581808 | Clytia hemisphaerica | exon |
| TCONS_00010145-exon-sc0000102-1510915933:580243..581808 | TCONS_00010145-exon-sc0000102-1510915933:580243..581808 | Clytia hemisphaerica | exon |
| TCONS_00010145-exon-sc0000102-1575043694:580243..581808 | TCONS_00010145-exon-sc0000102-1575043694:580243..581808 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:580243..581808 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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