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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010172 ID=TCONS_00010172|Name=TCONS_00010172|organism=Clytia hemisphaerica|type=transcript|length=862bp
GGAAGATGGTATGCTGCCGAATATTGAGCTGTACGATGACTTAGCAAATG
GCCTTTTCAGAAATGCGGGAAAGCTCTTTGCATATTCGATCTGTGAAAAT
GGACCTGCGCCAAATTTTCTATCTCCTTGGGTCTATGATTACATAGCTGG
TGGTTTGGGTATGGTTCTCAACAGATTGCCAGAGAAAATAGAAGATAAAA
CATACCAAAAGATCTATAAAATTCGAACAGAAGAAGAGCTGAAGGATTTT
TGTACATCAGATGAAGGCACCGATGTTCTATCAGAAATAAAATATCGAAG
TGTACCAAGTTCAATAAAACTAAAATCAGAAGAATTTATTTTAAGATCTC
TATTTGCAAAATGGTTAAATCCCTACGTTCCTTTCATTCAAGAAATTGCA
ATTGGTTTGGAGCAATATGGTTTTCTACAAAAGATAAAGGAACATCCTCA
AAGCCTGAAAACCTTATTTTGTTTACATACTGATTTTGATTGGACATTTG
ATGAGGTTTTTGAACTCCTGGAGCCCGATTTCAGCCCGGAAAACAATACT
TACAGATATAAAGAAATCAACACTTTCAAAGCTTTGTCAGACGCTTTGTC
AgattgttatgatttgaaaggtgaagaaaacgCTCTTACACTTTCAGAAG
TAATGAAGTTCATCACCGGTTGTTCTTCAAAACCAGCGTCTGGGTTACCA
GGGAAAATCACTGTGATATTTGAGAAATATTGTCCCGAAAATTGCAGATG
TAAACCCACAACTTCTAGCTGCGATATTCAAATCGAAGTTGCTTTGCGCT
ACACTACCAAACGTGACATGATGATAGCTTTAACAGATGCATGCCGCGAG
AGTAAAGGAATG Run BLAST on NCBI transcript from alignment at sc0000103:259015..263986+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010172 ID=TCONS_00010172|Name=TCONS_00010172|organism=Clytia hemisphaerica|type=transcript|length=4972bp|location=Sequence derived from alignment at sc0000103:259015..263986+ (Clytia hemisphaerica)
GGAAGATGGTATGCTGCCGAATATTGAGCTGTACGATGACTTAGCAAATG
GCCTTTTCAGAAATGCGGGAAAGCTCTTTGCATATTCGATCTGTGAAAAT
GGACCTGCGCCAAATTTTCTATCTCCTTGGGTCTATGATTACATAGCTGG
TGGTTTGGGTATGGTTCTCAACAGATTGCCAGAGAAAATAGAAGATAAAA
CATACCAAAAGGTTAGAACTGTTCAATATTGTGTATATGTATCTTCATTG
TTAACTCTAATGCTAACAATGCTAACAAAAGTTCCTACGACGTTTATTTT
AGAGGTTAAAGTATAATTATTTCGATAAAGACAAGTTATTACAAGatgaa
tgttaaaaaagacAGAGCACTGTACTGCTCAGTAAAATTAATATCGTGCA
AATATCTTTGTTATTATTCACATTGCGCTGGAGCTCTTATTTGAAGGCTA
AAGCACTtgatattttatcattttaaatctctttgatctTTTGTAATTTA
AACTATACTTGTTTACTTGAAATCATGTTTACTTGCTCCCAAAAACTgat
taatttcaatattttaaaggGTATGCTCGTGTTATGCATAAAAACGAATT
TTGAATGAACGCCTCTGCTAGAGCTCTTTCCATACACCATCGTGCATCAT
ACATGATAAATTGAACTACTTTTCAAATCTATACCCCCTGGTACAAGTAG
AAAACCACCATGCAAAAATATTCACTTATTTCATTCTCGTCCCTGAATTA
CATGTGAATTAATTACAGGTGTCCAATAATCAACCAAAAATTAGGGCCCC
AATTTGGGCTCCCTACCTTTTTGACCAAATCGTTTTAAAAAGggcaaatt
ttaaaagtttgaaaccTTAAAACGATCAATATcagatagagcatgaaatt
tatcaaatatcAGAGTTTGGTAGGAAATTATTGTCCCATTTCCATTTATG
TTTTTTGTTTCTCCCTCTAGAAGACCTAGAAGTTATTAGAAAATATTCAC
TAGGTATTTATTAactaaaaattcttattttttcttactCAGATCTATAA
AATTCGAACAGAAGAAGAGCTGAAGGATTTTTGTACATCAGATGAAGGCA
CCGATGTTCTATCAGAAATAAAATATCGAAGTGTACCAAGTTCAATAAAA
CTAAAATCAGAAGAATTTATTTTAAGGTAAGCAAAATCTAGATTTAAAGT
GCAATTCCCTTATAATCTGTTTTCCAcaaatttaagaatattcttTTTGA
TatctagatttttattttttgaataaattttcttgTAGCTTCTTGTTACT
TCACGATTCTTAAGTTTCAGGGAAATTAGGATCAAACAGGGAACTTGAAG
CAAATATGTTAAGTAGAGTTTTAGTTTTGAATTCTTTAGCCTTCTAGTGT
AGAACAAGCTAGTTTGCGTCTTAATAAGAgacatttatataaaaaattag
gCAAAATCAGGTGGGCTGAGGCAGAGTTTGCTTATTTTGGATATTTATCC
CGCTATATGCAAATAAGGAAcatgtcaagaatttttcatgAGCTATCGCC
CCCTAAAATTTGAGATAATTTGCCCGAAAAATGCACTTCAGGTAACTCGA
GACCAATAtagaagaaattgaaattctGTTTAAAAGTTTATACATCTAAt
tatatatcaaaatcaaattccaCAAAAACGTTTCCTCATGAAAAACTATA
AAGTTCCACGCAACTGAACTCTTTGAATCCTTTTATCAGCTGACAAAATG
TTTATCTATAGCTTTCATGTCAAATTAGTAAGTTTGTTATTGTTCGCTAG
ACAAGGCAAGGACCCCTTTGGATTTATCATTTCCTCTTTTTACTTTAGAT
CTCTATTTGCAAAATGGTTAAATCCCTACGTTCCTTTCATTCAAGAAATT
GCAATTGGTTTGGAGCAATATGGTTTTCTACAAAAGATAAAGGAACATCC
TCAAAGCCTGAAAACCTTATTTTGTTTACATACTGATTTTGATTGGACAT
TTGATGAGGTTTTTGAACTCCTGGAGCCCGATTTCAGCCCGGAAAACAAT
ACTTACAGATATAAAGAAATCAACACTTTCAAAGCTTTGTCAGACGCTTT
GTCAgattgttatgatttgaaagGTAATTTTTAATTTCGGTTTGTGCAGA
AAAAGAGGGCAAAAAGCCGACTTTAAGGACTTTAAGGTTTTTAATGGTTT
CAGAAAAGATATCTATACCTCAATGGGCttaaaaattaggaaaaaatggC
TCAGTTAGCcgaaagtatttcaaaatgctACCTGTTGGCATTTCTTTTGG
TGTAATTAGCTGTCAATTAAATGctattaactctttttgtaaaaaagtta
aacctacagcacctgaccccgagaatgtaggtgaaatttgaatcagacct
gagagatgtagatttgcatttaaaaaaatattttttatttatNcagcggg
tctgggacacgtcgtaaaagcttaaaatgccaacattaattatctctcag
gtaatactttcatgttatgaaagtacaacaaaaaaagtttatataatttg
acagactttttaagTCGGGTTACGNtgaactcccaaaatcctttcccagg
ggttagtttcattacttttgatagataggctaatttttttggtccttgaa
gttgactcccattttcattataacccccagaattttatggctttaaatct
agtaatagtaaaatgttgatattttttcgattgaattaattataacagga
aattttagaaatatttgatgccaaaacaatattctaaagagcttttgtta
ttctgaaaattgcattttttcgctttttaacccccataatgtaggtgaaa
agattcgattgctgagagcgaaatttcagtattcatcggaaatttttgtt
ctctaagtgaaattcatactttagaaatatactctgacaNtaccctatca
tcataacttaattccaatagatttcgatttagagaggatttatttaaaaa
atgtctcaattcgagtagtatccaatcaactttgattcagattttcgcct
gaaaaaatcaattcaagttaaaattttatgtctagaaataatcagtaata
tgtaatagtatgctctgaaacaactttttatgaagttgaactatcgttag
ggctaccatgctaaaaaatgagaaacctacattctcgggttttactacat
tctcggggtcaggtgctgtatatACCATCTTAAAGAAGTTAATTAAACTA
CCAAAAAACATAATTATGGCCAATTGGATTTTATTCATTGTTTTCAGAAC
CCTTTTTTGACTTTGAAGccgattttctcaaaaagtaATCCTTTTAAAGA
CAAAGTGAGACATGTTTTTCGGCTCAGCCTTTCTTCTTTACAATGATGTA
ATTCTCAAATTCACCAATCAAAACGTGTACGTACGTTAACTCTCTGAAAA
TAGTTGgtattgaattttttagaaaaaaattatgatccTAATTGTACTAA
ACTCTTATCCAATTTGCcattgaaagatttttgttaTACTGTTAAAAGAG
ACAAAACAAAATTCTTTATTTACATGAGAGGGCCTGAATGTACACGACTA
GATGTAGATCCATAAtggcaaattttaattttgatgcgTCCTATTGTATG
CCCTATATGTAATTGTATGGCAATCATTCAGAACTTTTCTCTTGCTCACT
TTTGATATGTAAACATTGGATCTAAAAACATTTCTACAACGAGATTTATA
GGAaacagctgcccccccccctaaacgaaaatctttgataatttttgaaa
gacTTGTCCAATCGACATGAAATTTTCTCAGTGTGTACCAAATATGGATT
GGCATCTTCAGTAAAAGCTCCGGcatcatcgatgacgtcattaccacctg
atgacgtcattaaaaatgCCACAAATTGGAACCCCTTTTAACTATATTTC
TTACTCAAATTTTGTGTGGCAACTCCATACGACATATAACTTTGGggggt
catttttttgccacCTGAGTATTTACAGACCGGCCTAAAAGAGCCTTTTT
AGCCTAAATTCGGACTTAACATTCTCAGGATTGAGAAATGGTAAGATCTT
GATTTTGACCAGTGGTTAGGAATTGATTATAGAAGCTTGCTGCCTTAATT
TCAACGAAATCGGACATGTGGTTGTCCagaaagtgagcattttaggtAAA
TTATTGACTGTTCTCTAAAATAGGAACCACGCAGGTGGcttacttgaaat
tttccacATTCCTCAGATGGTCAGTCAATGCCTATCACTCGTCAAAATTT
CGGTAGTTCATGAGTTCCGGAGGGGGGCTATGTGTATTttgcagaccggt
ctgtaaagtATTAAATATCAATgggacaaaattttgttggtcaCTTGTTG
CACTTGTTACTTTTAgttgaaaaattatgattttagcCAATTTGACGTTC
TtatctgtaaaataccaaccaaacaggtcaacttgaaattttgcaagtcA
TCCCGTTTGTCTTTTCAAGTCATCAGCATTTTATAGATATTGAGATTTCA
GACCCAACCCTCCCCCAAAATGCTTCCTCTATTAAAAATATAAGAAGATG
CATGAAAGGTTAACCCTCTCCCTTGTCAAATCCCTCAATTTTCTCATCGG
TTCTTCTCAGGCCTTAGTTGTGTATACTTTGctttcatataaaaatatat
cttttCACAATTCTTGTCATTacattttaggtgaagaaaacgCTCTTACA
CTTTCAGAAGTAATGAAGTTCATCACCGGTTGTTCTTCAAAACCAGCGTC
TGGGTTACCAGGGAAAATCACTGTGATATTTGAGAAATATTGTCCCGAAA
ATTGCAGATGTAAACCCACAACTTCTAGCTGCGATATTCAAATCGAAGTT
GCTTTGCGCTACACTACCAAACGTGACATGATGATAGCTTTAACAGATGC
ATGCCGCGAGAGTAAAGGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010172-exon-sc0000103-1491911889:259015..259225 | TCONS_00010172-exon-sc0000103-1491911889:259015..259225 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1510915933:259015..259225 | TCONS_00010172-exon-sc0000103-1510915933:259015..259225 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1575043694:259015..259225 | TCONS_00010172-exon-sc0000103-1575043694:259015..259225 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1491911889:260057..260190 | TCONS_00010172-exon-sc0000103-1491911889:260057..260190 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1510915933:260057..260190 | TCONS_00010172-exon-sc0000103-1510915933:260057..260190 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1575043694:260057..260190 | TCONS_00010172-exon-sc0000103-1575043694:260057..260190 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1491911889:260863..261137 | TCONS_00010172-exon-sc0000103-1491911889:260863..261137 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1510915933:260863..261137 | TCONS_00010172-exon-sc0000103-1510915933:260863..261137 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1575043694:260863..261137 | TCONS_00010172-exon-sc0000103-1575043694:260863..261137 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1491911889:263745..263986 | TCONS_00010172-exon-sc0000103-1491911889:263745..263986 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1510915933:263745..263986 | TCONS_00010172-exon-sc0000103-1510915933:263745..263986 | Clytia hemisphaerica | exon |
| TCONS_00010172-exon-sc0000103-1575043694:263745..263986 | TCONS_00010172-exon-sc0000103-1575043694:263745..263986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:259015..263986 + |
Blast
The following BLAST results are available for this feature:
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