|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010174 ID=TCONS_00010174|Name=TCONS_00010174|organism=Clytia hemisphaerica|type=transcript|length=3696bp
AATCAATATAACAAACAAAAGCAGATCATAACCAAATGGAGAAGGTATCA
ATAGAGCTTGATGTTGATGTTAGTAATGCACTTGAAGAAATCAGAAACAT
TTTTGCTGGTTCTAGTGACACAGAGGAATTATTTCAATGTGTTCAAGAAT
TGATCCCCTTGGAACATGATAGATACAAAATAAAATCTGTAAATGGAAAA
GTCACCTGTTTTAAAGCACACGTCCAGTGTGACATAAAATCTGTGACAGA
AGTTGAAAAGTTTGTTGGATCGTACATGGAAAGATCAAATGAAACACTTC
GTAAATTAACACCTAAAAGACCTGGGGCAAAAAGCATTTACGAGGTTATT
TATTATTATCGTTGTCACTTCAAAACTTATCATCAGCCAACAATGAACCA
TGCACAAGTGATAAAAGCCAAACCAAATAAAAGATTCAAAAACACAGACT
GTCCTTTCAGTCTTGCAATCAAATTAAGGAAAGACAAAGACAATGAGCAT
CCTTGTGATATTGAAATTGAGCACCAGCACAACCATAGTAATGATTCACT
TCAGTCACTAACCTTTAAAGATATTTCACCTGATGTTTGTGCTAAAATAA
AGGAAATGTTTGACAGAGGTTTGACTCCAGGTTTAGCATATCGTGAGATG
CTACATAATGTAAAACAATACGCTAAAAATGACATACAACTTCACATCAA
CCTTGCTGATCGATCCAAAATGCCCAGGAGAAGGGATTTCAATAATCTTT
ACACGCAATTTCACCGAGAAANCTTGCTGATCGATCCAAAATGCCCAGGA
GAAGGGATTTCAATAATATTTACACGCAATTTCACCGAGAAAAATTTGGC
tctgaaaatttggaaacaaTGTTTAATTGCTTTGAAGAACGGATTTCGAA
TTTCAAAGCTAACAATCCTGATCACCTTATGACCTATCAACGTTTCGAGG
AAAAGGATGATACGCCGTTTATATTTTGTTTGCTAACTCCGCTAATGAAA
CGTGTTCATGAGCAGGTCAAAACATCAGCAGAACTCGCTTTTCTTGACTC
CAGCTCCAACATGGAAGAATTCAATTTGCGGGTGTTCCTTATGGTTTGCC
ATAATCCAATTGGAGCATTGCCATTGGGAATCATCATAACGAGTGATGAA
ACCACCGACACACTTGTTAGAGCTTTGGATATGTTCATAAGCATTTTGCC
AAAATCATCCTTCTTTGGTCGTGGGAATGATGCTGGTCCAAAAATTATTA
TGACCGATAACTGTTCGGAACTGCGAGATGCATTGAAACATGCATGGCCA
AACGCAATCTTGTTGTTTTGTTCCTTTCACATCCTCCAGCAGGTATGGAG
ATGGCTGTTTGAGAAAAAACATAATGTCGCAGAATGTGACAGGCAATTCA
TAATGAATGCTTTTAAAGCAATTCTATATGAGAGATCAATCTATGAATTT
GAAAGTAAATTTGAGGAGTTTCGCGAGGATGAAATTGTTTCGAATCACGT
GGCCTTATTGTGTTACATGGAAAACCTTTATGAAATGAGAGGAAGCTGGG
CCCATTGTTACCGAAAGAATCTGATTATTCGAGGAAACAATACAAATAAC
CCAGTTGAGGCTCAATTCTTAGTATTGAAAGACAGTGTCTTACTGAGACA
AAAGGAAATTAATATCAATGGATTGNACCAATTTACTATATCGCGCGCAC
ATTTTACCAAACGAGATACGCGCTGCGCGCGCAATCAATGGATTACTTGA
CAAACTTCTCGAAGACTTTAATGAACATTACAAGGTTAAACTGTTAAATG
TTGCATCAGGGAGCTTTGACGGTGTTTAtccaaaattggcaaaaatgaaa
aagaaagttaATCTAACCAATGCTAAACTTTGTTCAATTATAAATAGAAT
TGAAAAGATTGGTATATCAACCTACAAGTGCCCTAGTTTTGAGAAAgcag
gatatttttatttcattggcACAGATATTGGTGTTTGCAGCTGTCCAGTT
GGAGTTGACGGTAGTCCATGCAAGCATCAATATGTTATATGGGCACATGT
TGACCACAATTCATCAAACTTTCTACCCTTTTTTTCTGCTGAAGACAGGA
AAAATTATGCATCAATTGCTATTGGTGAAAGCTTGCCAATAGAACTTTAC
GCTGGTATTCACGGTTCAACAGAACTAACTCATGTTGCAACAGAACCCCC
TCCTGCCGATCAAAACAGTTCTACCGACCTTGCAATACCTGATTATATGA
TGATTCAAAATGATCAAACGTACTCTTCTCGAAATCACACCATAGATGTC
ATTACACCAGAAGAGTGTAagatcaaaatacaaaaagctGCCGAATCGTT
AATTGCTAAAATTGACCAAAGAAGTAAAGATACAAACTTTTTAACTGGGG
TTTCTAAGTTTTGTGACAGAATCGAAAAATTACCAACATCCCGCCTGGCA
TCTGCCTTTCATTCATTTGCAGGATCCTCAGTTGAATCAATAACAGCAGG
CCAGGTCAAGAAAGTCACTAAATCCAAACGTGGCAAGATACACGTAGGTC
CTGAAGCTGTTAAGCGTAGAAAGAAAGTGTCTGGAAGCCGAAGTGCCCGT
GTTAAAGGAATGACAGTAAAAAACAACCCTTTTGAGCTTAAACAATCGAA
AAAGAGAGAGCattgtttttccaaaaatgtgaATGATAATGTTGCAGTTC
CTAGGAAAGCTAGAAAATTCATGGCTTCCAAAACACAGCATCCTACTAAA
AGATGTTCCACGACTTCATCTACGGATTCTATAagcaaatgaaattttta
gcaTCAAGTTTTTATGACAGTATTGtattatattatataatatTACTTCC
ACGTGTCTGATGCGCTTTACCCTTGGGAGAGTCTGATTTTAGAACAATAT
CATTGGCCATataaatggccaaaaaaatggGAGGAGGTCTAGCTAATATT
GATGAAGAGATGTGTTTTTATTACACCTTTATGTTCACAAGTTTTAGACC
AAAAGTTTGGTCAAGACAGCCATGGCGGCTGCAGGCTCTGCCTAATTACA
TTAAATCGCCATATAATGAAAACTACTGGGGCAatttgggctgaaatttt
gcaaagtAGCTCGTTTGGGTATAAGGATGGCGACTACATACAGAAAATTA
GCAATTTCAAAATAGTTCTGATGGTCATGTTGGCAGGAGAGGCCGATAAG
TCGTTTTTGAATTCTCAgtcaaaaaagtccaaaatggtagcttattttga
tattttttgattttattttgaaatactcATTATAATCAAACtctgtacaa
aatttcaactCCATATGATGGCTTACCAATTATGGccaaaagtatttcaa
aatttaaaaaaagtcaccGCAAAATTGATTGACCGGAACAAAAGccgttt
tgattgaaaaattgaaatttcataaaaacctTTTTACTTAGTACCCCCTC
TGGGGTTTCACCAGAGCAAAAAAGCcccagattttttttctgaaaaagcc
ctTTTTTAGTATCATAAATTATATCATATTTATTCAGGGTGAACACTTAA
ATCTACAGGGCTATCCGTACAATTAGCTGCCAAGAGGTGTAAATGTCCCC
TTCCCCCGTTTAGTTTCAAAAATACTTTCTGCTGTTATTAGAAATGTCCT
TGATTTTAGCCTTTTTACCCCTGATACTTTTTGCTGTGTATTTCAG Run BLAST on NCBI protein sequence of TCONS_00010174-protein >TCONS_00010174-protein ID=TCONS_00010174-protein|Name=TCONS_00010174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
MDXTNLLYRAHILPNEIRAARAINGLLDKLLEDFNEHYKVKLLNVASGSF
DGVYPKLAKMKKKVNLTNAKLCSIINRIEKIGISTYKCPSFEKAGYFYFI
GTDIGVCSCPVGVDGSPCKHQYVIWAHVDHNSSNFLPFFSAEDRKNYASI
AIGESLPIELYAGIHGSTELTHVATEPPPADQNSSTDLAIPDYMMIQNDQ
TYSSRNHTIDVITPEECKIKIQKAAESLIAKIDQRSKDTNFLTGVSKFCD
RIEKLPTSRLASAFHSFAGSSVESITAGQVKKVTKSKRGKIHVGPEAVKR
RKKVSGSRSARVKGMTVKNNPFELKQSKKREHCFSKNVNDNVAVPRKARK
FMASKTQHPTKRCSTTSSTDSISK Run BLAST on NCBI transcript from alignment at sc0000103:283873..288655+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010174 ID=TCONS_00010174|Name=TCONS_00010174|organism=Clytia hemisphaerica|type=transcript|length=4783bp|location=Sequence derived from alignment at sc0000103:283873..288655+ (Clytia hemisphaerica)
AATCAATATAACAAACAAAAGCAGATCATAACCAAATGGAGAAGGTATCA
ATAGAGCTTGATGTTGATGTTAGTAATGCACTTGAAGAAATCAGAAACAT
TTTTGCTGGTTCTAGTGACACAGAGGAATTATTTCAATGTGTTCAAGAAT
TGATCCCCTTGGAACATGATAGATACAAAATAAAATCTGTAAATGGAAAA
GTCACCTGTTTTAAAGCACACGTCCAGTGTGACATAAAATCTGTGACAGA
AGTTGAAAAGTTTGTTGGATCGTACATGGAAAGATCAAATGAAACACTTC
GTAAATTAACACCTAAAAGACCTGGGGCAAAAAGCATTTACGAGGTTATT
TATTATTATCGTTGTCACTTCAAAACTTATCATCAGCCAACAATGAACCA
TGCACAAGTGATAAAAGCCAAACCAAATAAAAGATTCAAAAACACAGACT
GTCCTTTCAGTCTTGCAATCAAATTAAGGAAAGACAAAGACAATGAGCAT
CCTTGTGATATTGAAATTGAGCACCAGCACAACCATAGTAATGATTCACT
TCAGTCACTAACCTTTAAAGATATTTCACCTGATGTTTGTGCTAAAATAA
AGGAAATGTTTGACAGAGGTTTGACTCCAGGTTTAGCATATCGTGAGATG
CTACATAATGTAAAACAATACGCTAAAAATGACATACAACTTCACATCAA
CCTTGCTGATCGATCCAAAATGCCCAGGAGAAGGGATTTCAATAATCTTT
ACACGCAATTTCACCGAGAAANCTTGCTGATCGATCCAAAATGCCCAGGA
GAAGGGATTTCAATAATATTTACACGCAATTTCACCGAGAAAAATTTGGC
tctgaaaatttggaaacaaTGTTTAATTGCTTTGAAGGTAAGCAAATAGG
ACTTAgcataaaatataatttttgattggTTATCTCCCATACCTTATTAA
TAAAAGCTAGTTTGGAGAATGACCAAAATGTCTTTCATGGTTTTTTTGAT
TGCAGGATAGATAGGTCTGTTAATTTGGCATACATTTTCTAATTGTTGAA
TTCGCCTCTTGTATCATTTTCAGATGTGTTAAAaaggtaaataaatactt
acttacttacttacttaattaCCATTAGTAACTGTCTGTTCAATCATGAA
ATTCTCTCTTTAATATTTTTAGAACGGATTTCGAATTTCAAAGCTAACAA
TCCTGATCACCTTATGACCTATCAACGTTTCGAGGAAAAGGATGATACGC
CGTTTATATTTTGTTTGCTAACTCCGCTAATGAAACGTGTTCATGAGCAG
GTATAGTAAtgatattttcagcttttgattCTAtgacattttgatatttt
tggctTGTAGATACCTTCTACTGAGCAAAACCCTAAAATGTTTTTACCAC
TTATTTTTCAAAGTGGAGATATGTTATGATTTGAAACTTCTGAAAATGGG
TTCAGGGTTCCTGCGTTAAAATTCttattgtttttttgcaaatagtcaaa
aatttcaaacttaaattATTTCAACTTTGGAAAATAATGGCAAAATAGGC
AAAAAGATTTGGAGGTTTACCTTTGGTCCTTAAAAGGAATAGGTGGGCCA
ATCTCAAACCATTAAATTTTGATTAACCCTTTAAGTTTTGTATATCAATT
TATTCAttgataataatttcaaaatcaagattttgaGCCCTTGTTACAAC
TTTCTAGAGAAACTACattaaaaaacttaattttggcgagaacttaattt
taatttggcagatggcttATTTTTAGATccaatatcagggtgaaaacatT
GATATCGCATTCTTTTTGGgggtaaattgtgaaaaaccggacacaaaatg
aaaaaaattaaatttggcgggttTCAGACAAATCCGCCAAAAATTTTTCC
TTTAATGTAGCTGTCAAGATGTAAATAGAAATTGGGTTCTTCCATAGTAA
ATACAATAAATACGGTGTCAGAAAAGGGGGATTTGTTGACTGAAATGTCT
AGGGGTAAATTATTGAAAATCAATGATAAGCCGCCACCCTGTGTAGAAAa
taataattgttaaaaagatttttaaaaacatatttttatccTTTATTTTT
AGGTCAAAACATCAGCAGAACTCGCTTTTCTTGACTCCAGCTCCAACATG
GAAGAATTCAATTTGCGGGTGTTCCTTATGGTTTGCCATAATCCAATTGG
AGCATTGCCATTGGGAATCATCATAACGAGTGATGAAACCACCGACACAC
TTGTTAGAGCTTTGGATATGTTCATAAGCATTTTGCCAAAATCATCCTTC
TTTGGTCGTGGGAATGATGCTGGTCCAAAAATTATTATGACCGATAACTG
TTCGGAACTGCGAGATGCATTGAAACATGCATGGCCAAACGCAATCTTGT
TGTTTTGTTCCTTTCACATCCTCCAGCAGGTATGGAGATGGCTGTTTGAG
AAAAAACATAATGTCGCAGAATGTGACAGGCAATTCATAATGAATGCTTT
TAAAGCAATTCTATATGAGAGATCAATCTATGAATTTGAAAGTAAATTTG
AGGAGTTTCGCGAGGATGAAATTGTTTCGAATCACGTGGCCTTATTGTGT
TACATGGAAAACCTTTATGAAATGAGAGGAAGCTGGGCCCATTGTTACCG
AAAGAATCTGATTATTCGAGGAAACAATACAAATAACCCAGTTGAGGCTC
AATTCTTAGTATTGAAAGACAGTGTCTTACTGAGACAAAAGGAAATTAAT
ATCAATGGATTGNACCAATTTACTATATCGCGCGCACATTTTACCAAACG
AGATACGCGCTGCGCGCGCAATCAATGGATTACTTGACAAACTTCTCGAA
GACTTTAATGAACATTACAAGGTTAAACTGTTAAATGTTGCATCAGGGAG
CTTTGACGGTGTTTAtccaaaattggcaaaaatgaaaaagaaagttaATC
TAACCAATGCTAAACTTTGTTCAATTATAAATAGAATTGAAAAGATTGGT
ATATCAACCTACAAGTGCCCTAGTTTTGAGAAAgcaggatatttttattt
cattggcACAGATATTGGTGTTTGCAGCTGTCCAGTTGGAGTTGACGGTA
GTCCATGCAAGCATCAATATGTTATATGGGCACATGTTGACCACAATTCA
TCAAACTTTCTACCCTTTTTTTCTGCTGAAGACAGGAAAAATTATGCATC
AATTGCTATTGGTGAAAGCTTGCCAATAGAACTTTACGCTGGTATTCACG
GTTCAACAGAACTAACTCATGTTGCAACAGAACCCCCTCCTGCCGATCAA
AACAGTTCTACCGACCTTGCAATACCTGATTATATGATGATTCAAAATGA
TCAAACGTACTCTTCTCGAAATCACACCATAGATGTCATTACACCAGAAG
AGTGTAagatcaaaatacaaaaagctGCCGAATCGTTAATTGCTAAAATT
GACCAAAGAAGTAAAGATACAAACTTTTTAACTGGGGTTTCTAAGTTTTG
TGACAGAATCGAAAAATTACCAACATCCCGCCTGGCATCTGCCTTTCATT
CATTTGCAGGATCCTCAGTTGAATCAATAACAGCAGGCCAGGTCAAGAAA
GTCACTAAATCCAAACGTGGCAAGATACACGTAGGTCCTGAAGCTGTTAA
GCGTAGAAAGAAAGTGTCTGGAAGCCGAAGTGCCCGTGTTAAAGGAATGA
CAGTAAAAAACAACCCTTTTGAGCTTAAACAATCGAAAAAGAGAGAGCat
tgtttttccaaaaatgtgaATGATAATGTTGCAGTTCCTAGGAAAGCTAG
AAAATTCATGGCTTCCAAAACACAGCATCCTACTAAAAGATGTTCCACGA
CTTCATCTACGGATTCTATAagcaaatgaaatttttagcaTCAAGTTTTT
ATGACAGTATTGtattatattatataatatTACTTCCACGTGTCTGATGC
GCTTTACCCTTGGGAGAGTCTGATTTTAGAACAATATCATTGGCCATata
aatggccaaaaaaatggGAGGAGGTCTAGCTAATATTGATGAAGAGATGT
GTTTTTATTACACCTTTATGTTCACAAGTTTTAGACCAAAAGTTTGGTCA
AGACAGCCATGGCGGCTGCAGGCTCTGCCTAATTACATTAAATCGCCATA
TAATGAAAACTACTGGGGCAatttgggctgaaattttgcaaagtAGCTCG
TTTGGGTATAAGGATGGCGACTACATACAGAAAATTAGCAATTTCAAAAT
AGTTCTGATGGTCATGTTGGCAGGAGAGGCCGATAAGTCGTTTTTGAATT
CTCAgtcaaaaaagtccaaaatggtagcttattttgatattttttgattt
tattttgaaatactcATTATAATCAAACtctgtacaaaatttcaactCCA
TATGATGGCTTACCAATTATGGccaaaagtatttcaaaatttaaaaaaag
tcaccGCAAAATTGATTGACCGGAACAAAAGccgttttgattgaaaaatt
gaaatttcataaaaacctTTTTACTTAGTACCCCCTCTGGGGTTTCACCA
GAGCAAAAAAGCcccagattttttttctgaaaaagccctTTTTTAGTATC
ATAAATTATATCATATTTATTCAGGGTGAACACTTAAATCTACAGGGCTA
TCCGTACAATTAGCTGCCAAGAGGTGTAAATGTCCCCTTCCCCCGTTTAG
TTTCAAAAATACTTTCTGCTGTTATTAGAAATGTCCTTGATTTTAGCCTT
TTTACCCCTGATACTTTTTGCTGTGTATTTCAG Coding sequence (CDS) from alignment at sc0000103:283873..288655+ >TCONS_00010174 ID=TCONS_00010174|Name=TCONS_00010174|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0000103:283873..288655+ (Clytia hemisphaerica)
ATGGATTGNACCAATTTACTATATCGCGCGCACATTTTACCAAACGAGAT
ACGCGCTGCGCGCGCAATCAATGGATTACTTGACAAACTTCTCGAAGACT
TTAATGAACATTACAAGGTTAAACTGTTAAATGTTGCATCAGGGAGCTTT
GACGGTGTTTAtccaaaattggcaaaaatgaaaaagaaagttaATCTAAC
CAATGCTAAACTTTGTTCAATTATAAATAGAATTGAAAAGATTGGTATAT
CAACCTACAAGTGCCCTAGTTTTGAGAAAgcaggatatttttatttcatt
ggcACAGATATTGGTGTTTGCAGCTGTCCAGTTGGAGTTGACGGTAGTCC
ATGCAAGCATCAATATGTTATATGGGCACATGTTGACCACAATTCATCAA
ACTTTCTACCCTTTTTTTCTGCTGAAGACAGGAAAAATTATGCATCAATT
GCTATTGGTGAAAGCTTGCCAATAGAACTTTACGCTGGTATTCACGGTTC
AACAGAACTAACTCATGTTGCAACAGAACCCCCTCCTGCCGATCAAAACA
GTTCTACCGACCTTGCAATACCTGATTATATGATGATTCAAAATGATCAA
ACGTACTCTTCTCGAAATCACACCATAGATGTCATTACACCAGAAGAGTG
TAagatcaaaatacaaaaagctGCCGAATCGTTAATTGCTAAAATTGACC
AAAGAAGTAAAGATACAAACTTTTTAACTGGGGTTTCTAAGTTTTGTGAC
AGAATCGAAAAATTACCAACATCCCGCCTGGCATCTGCCTTTCATTCATT
TGCAGGATCCTCAGTTGAATCAATAACAGCAGGCCAGGTCAAGAAAGTCA
CTAAATCCAAACGTGGCAAGATACACGTAGGTCCTGAAGCTGTTAAGCGT
AGAAAGAAAGTGTCTGGAAGCCGAAGTGCCCGTGTTAAAGGAATGACAGT
AAAAAACAACCCTTTTGAGCTTAAACAATCGAAAAAGAGAGAGCattgtt
tttccaaaaatgtgaATGATAATGTTGCAGTTCCTAGGAAAGCTAGAAAA
TTCATGGCTTCCAAAACACAGCATCCTACTAAAAGATGTTCCACGACTTC
ATCTACGGATTCTATAagcaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010174-exon-sc0000103-1491911889:283873..284759 | TCONS_00010174-exon-sc0000103-1491911889:283873..284759 | Clytia hemisphaerica | exon |
| TCONS_00010174-exon-sc0000103-1510915933:283873..284759 | TCONS_00010174-exon-sc0000103-1510915933:283873..284759 | Clytia hemisphaerica | exon |
| TCONS_00010174-exon-sc0000103-1575043694:283873..284759 | TCONS_00010174-exon-sc0000103-1575043694:283873..284759 | Clytia hemisphaerica | exon |
| TCONS_00010174-exon-sc0000103-1491911889:285045..285172 | TCONS_00010174-exon-sc0000103-1491911889:285045..285172 | Clytia hemisphaerica | exon |
| TCONS_00010174-exon-sc0000103-1510915933:285045..285172 | TCONS_00010174-exon-sc0000103-1510915933:285045..285172 | Clytia hemisphaerica | exon |
| TCONS_00010174-exon-sc0000103-1575043694:285045..285172 | TCONS_00010174-exon-sc0000103-1575043694:285045..285172 | Clytia hemisphaerica | exon |
| TCONS_00010174-exon-sc0000103-1491911889:285975..288655 | TCONS_00010174-exon-sc0000103-1491911889:285975..288655 | Clytia hemisphaerica | exon |
| TCONS_00010174-exon-sc0000103-1510915933:285975..288655 | TCONS_00010174-exon-sc0000103-1510915933:285975..288655 | Clytia hemisphaerica | exon |
| TCONS_00010174-exon-sc0000103-1575043694:285975..288655 | TCONS_00010174-exon-sc0000103-1575043694:285975..288655 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:283873..288655 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
