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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010177 ID=TCONS_00010177|Name=TCONS_00010177|organism=Clytia hemisphaerica|type=transcript|length=1314bp
AAAAATGTTCAATAGAGGTTGCTTACGTAATGGCGTGGTATGGAAAAGAA
TATAAAATAGAGGCTTTGCAATGAGGAGAACCACAAACCAACTTGAGAAG
ATTCAACAATAGTTCAACTAAAGAAATCGAAGAACAgattgagaagaaat
tttgaggaaaataaCGAAATCAAAAGTACGGTTTACGAAGAAGAATTAAT
ATCAAACAATGAAGACATCAATCACTTTCACGCTCTTAGCCGCCCTCTTT
GGATCAAATTACGCCTTAGTTGCGCCCACCGTTACTGGAACCACACCGCC
TGCAGTTGCCTGTCCTAATTCATTATGTAAAGGGCTTGCTGATGGAAATT
ATGGGTACGTCGATCCAGCCACGTACAAACCCAACAAACACTATTTCACA
CAATGTCTCCAAGGACTCGCCTACTGTCAAGCTTGCTGGCCAATGAATCT
CGAATTCTCCGCTAACTGCAATCAATGTTTATATTCATCCACAGATGATT
GCGTCACCACGAAACCATGGGAACCAGCCACCACTTTTACTTGCCCTGAT
GAATGTCCAAACCGCGGACCAGATTTCACTGGAAATATCGCCGACCCAGG
AAATCAACGACAATATGTCGGATGTTGGAATGGCGTCACTGTTGGATGTA
TCGCATGTCCAAGTAATCTTTTGTTTAATGAATATGAGAATGCTTGCTTG
TTCGAAGGGAAATACCTCACTCAACCATTGGATAAAAAGCATTAGAGACA
TCTCATTTGATGGCAATAGTTGAGAATTCTCCATTCCCTAGGAACTTTTT
CCAAGATTCTTTACATTAGATTCTTCTTAAACTTGAACCTCTACAATTCC
AACCTTTTCTCGACTCAAAGAAATCTTCATGTTAGATTCAATGAAGATTG
CCATCATCTTAgatggcatgaaactttgagtatgaaattaaactaaatcg
ttttctttactcaaactattttctttttactaCGATATCTTCGTAAATGT
CACTCTTATTCAAACACTTTAAATTGACGAATTCTCTCGTCTAGGAAAGG
ATTTAGGGAAAGtagattttatttatatacttttttaggcttttatagtg
ttagaattttaaaatccttaaaaatacCCGAATTCACTCCTGCCTTTTAT
ACCAACAAAATTTATGTAGCACCGtgcatttttccaaaaattgtttgtat
tttagattattttatatattgaaatttctattttatttatttcaatcttg
tAGTAAAATTTATTATCTTTCACCTTTAATactatgaaaataaatttcga
cAGTTATCTAAAAA Run BLAST on NCBI protein sequence of TCONS_00010177-protein >TCONS_00010177-protein ID=TCONS_00010177-protein|Name=TCONS_00010177-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MKTSITFTLLAALFGSNYALVAPTVTGTTPPAVACPNSLCKGLADGNYGY
VDPATYKPNKHYFTQCLQGLAYCQACWPMNLEFSANCNQCLYSSTDDCVT
TKPWEPATTFTCPDECPNRGPDFTGNIADPGNQRQYVGCWNGVTVGCIAC
PSNLLFNEYENACLFEGKYLTQPLDKKH Run BLAST on NCBI transcript from alignment at sc0000103:2868..4260- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010177 ID=TCONS_00010177|Name=TCONS_00010177|organism=Clytia hemisphaerica|type=transcript|length=1393bp|location=Sequence derived from alignment at sc0000103:2868..4260- (Clytia hemisphaerica)
AAAAATGTTCAATAGAGGTTGCTTACGTAATGGCGTGGTATGGAAAAGAA
TATAAAATAGAGGCTTTGCAATGAGGAGAACCACAAACCAACTTGAGAAG
ATTCAACAATAGTTCAACTAAAGAAATCGAAGAACAGATTGAGAAGAAAT
TTTGAGGAAAATAACGAAATCAAAAGTACGGTTTACGAAGAAGAATTAAT
ATCAAACAATGAAGACATCAATCACTTTCACGCTCTTAGCCGCCCTCTTT
GGATCAAATTACGCCTTAGTTGCGCCCACCGTTACTGGAACCACACCGCC
TGCAGTTGCCTGTCCTAATTCATTATGTAAAGGGCTTGCTGATGGAAATT
ATGGGTACGTCGATCCAGCCACGTACAAACCCAACAAACACTATTTCACA
CAATGTCTCCAAGGACTCGCCTACTGTCAAGCTTGCTGGCCAATGAATCT
CGAATTCTCCGCTAACTGCAATCAATGTTTATATTCATCCACAGATGATT
GCGTCACCACGAAACCATGGGAACCAGCCACCACTTTTACTTGCCCTGAT
GAATGTCCAAACCGCGGACCAGATTTCACTGGAAATATCGCCGACCCAGG
AAATCAACGACAATATGTCGGATGTTGGAATGGCGTCACTGTTGGATGTA
TCGCATGTCCAAGTAATCTTTTGTTTAATGAATATGAGAATGCTTGCTTG
TTCGAAGGGAAATACCTCACTCAACCATTGGATAAAAAGCATTAGAGACA
TATCATTTGATGGCAATNATGCTTGCTTGTTCGAAGGTAAGTACCTCACT
CAACCATTGGATAAAAAGCATTAGAGACATCTCATTTGATGGCAATAGTT
GAGAATTCTCCATTCCCTAGGAACTTTTTCCAAGATTCTTTACATTAGAT
TCTTCTTAAACTTGAACCTCTACAATTCCAACCTTTTCTCGACTCAAAGA
AATCTTCATGTTAGATTCAATGAAGATTGCCATCATCTTAGATGGCATGA
AACTTTGAGTATGAAATTAAACTAAATCGTTTTCTTTACTCAAACTATTT
TCTTTTTACTACGATATCTTCGTAAATGTCACTCTTATTCAAACACTTTA
AATTGACGAATTCTCTCGTCTAGGAAAGGATTTAGGGAAAGTAGATTTTA
TTTATATACTTTTTTAGGCTTTTATAGTGTTAGAATTTTAAAATCCTTAA
AAATACCCGAATTCACTCCTGCCTTTTATACCAACAAAATTTATGTAGCA
CCGTGCATTTTTCCAAAAATTGTTTGTATTTTAGATTATTTTATATATTG
AAATTTCTATTTTATTTATTTCAATCTTGTAGTAAAATTTATTATCTTTC
ACCTTTAATACTATGAAAATAAATTTCGACAGTTATCTAAAAA Coding sequence (CDS) from alignment at sc0000103:2868..4260- >TCONS_00010177 ID=TCONS_00010177|Name=TCONS_00010177|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0000103:2868..4260- (Clytia hemisphaerica)
ATGAAGACATCAATCACTTTCACGCTCTTAGCCGCCCTCTTTGGATCAAA
TTACGCCTTAGTTGCGCCCACCGTTACTGGAACCACACCGCCTGCAGTTG
CCTGTCCTAATTCATTATGTAAAGGGCTTGCTGATGGAAATTATGGGTAC
GTCGATCCAGCCACGTACAAACCCAACAAACACTATTTCACACAATGTCT
CCAAGGACTCGCCTACTGTCAAGCTTGCTGGCCAATGAATCTCGAATTCT
CCGCTAACTGCAATCAATGTTTATATTCATCCACAGATGATTGCGTCACC
ACGAAACCATGGGAACCAGCCACCACTTTTACTTGCCCTGATGAATGTCC
AAACCGCGGACCAGATTTCACTGGAAATATCGCCGACCCAGGAAATCAAC
GACAATATGTCGGATGTTGGAATGGCGTCACTGTTGGATGTATCGCATGT
CCAAGTAATCTTTTGTTTAATGAATATGAGAATGCTTGCTTGTTCGAAGG
GAAATACCTCACTCAACCATTGGATAAAAAGCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010177-exon-sc0000103-1575043694:3512..4260 | TCONS_00010177-exon-sc0000103-1575043694:3512..4260 | Clytia hemisphaerica | exon |
| TCONS_00010177-exon-sc0000103-1575043694:2868..3432 | TCONS_00010177-exon-sc0000103-1575043694:2868..3432 | Clytia hemisphaerica | exon |
| TCONS_00010177-exon-sc0000103-1510915933:3512..4260 | TCONS_00010177-exon-sc0000103-1510915933:3512..4260 | Clytia hemisphaerica | exon |
| TCONS_00010177-exon-sc0000103-1510915933:2868..3432 | TCONS_00010177-exon-sc0000103-1510915933:2868..3432 | Clytia hemisphaerica | exon |
| TCONS_00010177-exon-sc0000103-1491911889:3512..4260 | TCONS_00010177-exon-sc0000103-1491911889:3512..4260 | Clytia hemisphaerica | exon |
| TCONS_00010177-exon-sc0000103-1491911889:2868..3432 | TCONS_00010177-exon-sc0000103-1491911889:2868..3432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:2868..4260 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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