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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010180 ID=TCONS_00010180|Name=TCONS_00010180|organism=Clytia hemisphaerica|type=transcript|length=2510bp
ATTTTGACTCTAAGAAACAGAGTTTCACATGTAGAAAACCACAGGGTAAT
CATTTGGGTATATCTAGAAGTCTTAAAGTATCTTGCTGTGCTTTTATAAA
ATGGTAAAGTGAAAATTTAGTTTATCTCCTACTGAGAGAATCAAAACGTC
GGCCCTGCGTGAAAAGAtgtcttttttcttcataaaaatattcttttttc
ctAACTTAAaagattgtttttatttgtttttgggCCGTTTTTCCACCCTT
TTACATGATAAccccaattttcaaacttttcttttttttataaatctttt
ATTTCCCTACCGAAGAAATCGATCATTATGaaaaatgtcattcttctaTG
TATTGTTTGATAATCGCTTTANGAAAACGATCATTATGaaaaatgtcatt
cttctaTGTATTGTTAGATAATCGCTTTCACGTAATCTGATTGGTCCGTA
TAATTAATAGAAATGATCTGATTGGCCGATTGGATCAATTAAACAAATCT
GATTGGCTGACGCATCTGAGCAGTGCACGCGCTTCTATTTTGTTTGTATA
AATGAGCGAGAAATTTTTTGTAAAGGAACAAAAGAAATTGATTGTTTTCT
GTGTATAAATTCTAAAGATATTTGAACAACATTGAAAGGTTTGAATCAAA
TGCGTTTTGTAATGTGTGTGAAAAGCACATAGAaatttttttgtactttg
aaaCAAACACGAGAGGAAAGTTCActtgttttaaatttgatcAACTTTTT
CCTCTAATTGAAACATCGCATTCAAATTCTAAAGAACCCAAAACCTTTAC
CAAAATGCCCATCATGTATGAAAAAGTTATTCCCAAAATCGAACCACTTG
AATTGGGTGGCAATATGACATCATTTCACGGCCACCCTGGGAACGCCCAA
ATGATGACCGCCCATCACGGAACGCCCATGCACATTTTACCCTCGCATCA
GATGATTGGATTACACTCACACCACCATCAGAATATGTCACCGGGTCCTC
AAATGAACGGAATGCAACACCACGATGAAAACTCACCGATCTCCATGACA
ACTGTACAGACTGCATCACCAGTTACAACCAACCAATCAGAGAGCGACAA
AAAAGCACGTGATCATGTCAAGCGACCAATGAACGCTTTCATGGTTTGGT
CACGTGAGAAACGAAAGAAGATGTCGCAAATCAATCCCAGAATGCATAAC
TCagaaatctcaaaaattttggGTGCGGAATGGAAACGAATGACGGAGCA
GGAAAAGGGTCCTTACATCGAAGAAGCGAAACGACTTCAAACGCAACACA
GTATCGAGTACCCTAACTATAAATACAAACCGAGGAGACGCAAACCAAAA
GCCATGATGAAGAAAGATAAAATGGGATACCCGTATGACGCCAATGGCGT
GCCCGCTGGAATGAAATTCCCTTACCCTTACGCGAACATTGCGACGTTCC
CACAAGACGCCATGTACACACCCATCTATCAAATGCCTGGTGCACCCGCT
GGCTACGCAATGTACGCCGCTCCCGCTCCAACCGCTGTATCTACCGCTGA
CCAATCTCGACAATCCATGGTATCGCCATCTGGACAAGCCCGCCATTCAC
CGCCCACCTCCACCCCAGACTTCTATACCAGTATGGCTATCCAACCATCA
AGCACCGTTCGTTCGTCGTCCGCCGACCTTATGATGTCGGTGACGTCTCA
AAACGATCGCTACACGTCAATCAACACTACGCAAGGAAACGTTCAGTATA
CTTCCACGCCTCCACTTCACATCCCGACCGCTGCGGAACCTGCCACCGGA
AGTCCCGCTTACACTCCAATGTACGGTGGCCAAAGACATTTATAAGCTTT
CATGGGAGGTTTTCCTGCTGTGATACTATCCGAAATCTTTACTTAGAACT
TTTGCTAACTTTACTCTCATTTCAGACCTTTTAAATTTGGCGTACCCAAA
CAAGATGTAACGTATTTTTGGtttaaattgtcattttttGAATGTATATA
CATAGAAGAAAACGTATTACACAGATCGATATATTATTTATAATATGATA
ATAACACGATAATATAATATTCGTATATTTTATAACTTCAAATTGTGAAG
TTAATGTAAGAAGATTAGAGAAAAGGGCGCTGGAAATTTCCccccttttt
attttttaatatatattgatgaaaagaaaaagttatttttcaagGGACTA
ATTTCGACTAAATTTTAACTATTTTATTTAATCCAGATTGAATCTGTCGA
AGAATTTAAATATTGGTCTTATCTTTTGTTGCTGTTTCATCTTTTGAGTT
GTGTATAATTATTTGTAGTTCAAAAAGATTATATGTATTGCATACTATGC
GTATTATACTTATAGAGAGAAATTTATGTcaaaattgcatgtttttttat
ttcgtaTCGTAACTACAACCCTGTATATAGTGTTTTTtaatttgttgaat
ttttcaaaattcagaattattttttttctgaaactaAAATAATACATTCA
TACTCATATA Run BLAST on NCBI transcript from alignment at sc0000103:49960..55165- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010180 ID=TCONS_00010180|Name=TCONS_00010180|organism=Clytia hemisphaerica|type=transcript|length=5206bp|location=Sequence derived from alignment at sc0000103:49960..55165- (Clytia hemisphaerica)
ATTTTGACTCTAAGAAACAGAGTTTCACATGTAGAAAACCACAGGGTAAT
CATTTGGGTATATCTAGAAGTCTTAAAGTATCTTGCTGTGCTTTTATAAA
ATGGTAAAGTGAAAATTTAGTTTATCTCCTACTGAGAGAATCAAAACGTC
GGCCCTGCGTGAAAAGATGTCTTTTTTCTTCATAAAAATATTCTTTTTTC
CTAACTTAAAAGATTGTTTTTATTTGTTTTTGGGCCGTTTTTCCACCCTT
TTACATGATAACCCCAATTTTCAAACTTTTCTTTTTTTTATAAATCTTTT
ATTTCCCTACCGAAGAAATCGATCATTATGAAAAATGTCATTCTTCTATG
TATTGTTTGATAATCGCTTTANGAAAACGATCATTATGAAAAATGTCATT
CTTCTATGTATTGTTAGATAATCGCTTTCACGTAATCTGATTGGTCCGTA
TAATTAATAGAAATGATCTGATTGGCCGATTGGATCAATTAAACAAATCT
GATTGGCTGACGCATCTGAGCAGTGCACGCGCTTCTATTTTGTTTGTATA
AATGAGCGAGAAATTTTTTGTAAAGGAACAAAAGAAATTGATTGTTTTCT
GTGTATAAATTCTAAAGATATTTGAACAACATTGAAAGGTTTGAATCAAA
TGCGTTTTGTAATGTGTGTGAAAAGCACATAGAAATTTTTTTGTACTTTG
AAACAAACACGAGAGGAAAGTTCACTTGTTTTAAATTTGATCAACTTTTT
CCTCTAATTGAAACATCGCATTCAAATTCTAAAGGTATGATAATATTTTT
ATTCAACTGTTTGATCCTTCATTAATTAAACGTGCGAGGAAGGGAACGAC
TTTCTTCCTTCGAGACTTTTGATGTGTTTGACTTTTGTCGACCTCACCTC
ATTGAAATTAAAGCCTTTAAAATCTGTGGGCTGGAGCTTCAAGCAGAACC
AACCTTGAGGGAGGATCACTGGGGAAGCTATTACACGTTTAAAGTTCAAA
ACTATTAAAATATTTACAAAGTAAATATTTGTTTATGATTTTCATTTTTA
GAAAAACCTCAGCGGTTCGAATGTTTCCCCTAATTAGCTCTCTTATCGTG
CGGTCATCAATTAAAAACTCATTTATTTTTCTCGTTAATTACGCTTTCTT
TGAGATGAATGCGTCATTCTTTGACTGTGATTTATCTACTTGTCAAACTT
GTCAGATGACATGCGTTTTGACGTCTTCTTGGCACCCTGTCCAGGATCTA
GAGCTCAACTTGTTTTGCCTTTTTGATAGTCTGATGGTGGAAAAACTATG
CCATCAGCCAACAACAGAAAGCGAAGTAGCGATGATAGATTTTCTCTAGG
CTGCTGGCATCCACTAACGGATTCGTGCTCCTTATACTACCAGCGGTTTT
GTAGAGGTCTGCGATTCAGAGTAGATTTTTTCATTAGCTCATGGGCCCTT
TTACGCCAACCCAATCCTTATTGGCGTCAACTTTGAGCCGGTGGGGAAAA
GTACCTTTGCGCTTTTATTGCTTCTTAAATATAAAGTTATAGAAATTTCA
ATTATAACAATACCAAAACTATATTATGATATGGGAATCACTGCTAAAAG
TTATTTAAGTCTGAGGGTGATTTTTCTTGCCATTGATACGCGCTTTTCAC
AAGAAACTCAAAAATTTTCAGGCGTCAATGTTCTCCCGATATTCTACATA
TGAAAACTTAAAATGGGTTTTAAAATCTGTTAAAATCAGGACTTTCTTAG
TAATTCTCAATTCTGGGACTCAGATCGTTCTCAATTTGCTCTTAGGTTTT
GGCCCGTGTTCTTATAAAGAAGCGTGTATTTCACTGACTGTCTAACTATA
CGTCTGGTCGTTTAAAATGAAAAAGTCTAGACGAAAATTTAACTTTGAAT
CGGTCCAGTTTTTCCCAGTCATATTACGAGAACAAAAGAATTTTAAAACA
TCGGTGTTTTTCTTTGAACTTCAGTATTTTCTTTTGCGGTGTGTCGCAAC
TTAACAAATGACGCAAGTTTCAATTATACTCAATGTGTGCATAGAGTTTA
AAGTCCGGTGAAATATGCCTCACTAATCAAAACAATTTAAAATCGTCTAC
TAGAAACATTACTGACAAAAATGATTATCTTTGTTTGAGGTAAGCTCCTT
TGGATAGTTATACTTATGCAGCTCAGGCCTTTAGAAGGACTGCAATATTA
ATTTCACATTTGTATAAGTTCGAATACATAAATGCCCTGGGCGTTTATTG
AATTCTTGGGTTTTTAGACAGCGTTTCTTCGAGGGGGTTTTTATTTAAAG
TAATACGGTATTCAATTTCGAACTGTACACGGGTATTGACAAAAAAACCC
TCTGGAAATTTAGAGTAACAAATTGCCCCCTGGAAATTTGGGCTACAGTA
TCAAGAAAGGCCCTGGAAATTAGAAGAACTGAGCCTCCCTGGAAAGTATC
CTCGCATTTTAAATACATTTGTTGACCATCGTCTTAACGTAACAATTTTC
TTCCTTCAGAACCCAAAACCTTTACCAAAATGCCCATCATGTATGAAAAA
GTTATTCCCAAAATCGAACCACTTGAATTGGGTGGCAATATGACATCATT
TCACGGCCACCCTGGGAACGCCCAAATGATGACCGCCCATCACGGAACGC
CCATGCACATTTTACCCTCGCATCAGATGATTGGATTACACTCACACCAC
CATCAGAATATGTCACCGGGTCCTCAAATGAACGGAATGCAACACCACGA
TGAAAACTCACCGATCTCCATGACAACTGTACAGGTAATTCATTTTTCTG
TCTCCACTTACTCTCAAAATAAAACTCTAAAGACGGGAGGAGGTTGGGTA
AGAGATAACCAGGAATAAATCACGTTAAACATGTGAAGTTTTTCAATCAA
TTTCCTCATAGACAAAAAAAATTCAGTTTTTCTTCTTGGTTTGGTAACTC
GAACCTTTCACTTTTTGGTGTTAAAAATGTTACCAAATTTCTGTCTATGT
TGAACTGAAATCTTAAGAAAAATGTCTCTTGCATCTCGCACTGTTTTCAG
TTTCACTAAAATCTAGTTTCCTTCCAAAGTTAAAAGTAAAGTCTTCAAAT
TTATGGTCAGATTTGCACTTTCATTTTTCAATCATCCATGAACGAAACAA
AAAAACAAAAACAAGGATCTACTTTATATGACAATGACAAATATTCACAT
AGATTAACTTGATACATGATAAAACTCATCAAACTTTATTGATTGGGCGT
AGGGGCGGACAAGTCACTTGATCATCCGATTAACAACTCTTACAAAGCTT
TAATTAGTAGATTTAACTAATTGAATCCATCAGTTTCCCTTCTGATTAAA
TAAAACAAAATCAAATCAAACTAATTATAATACCTTATCTTTCTCAACCT
TTCAAAAAGTCAATACTCTTTCTGATCAGCATTCATTTGATCACTTCATA
CTGAACTATCAACACTGTCCGAATTTTCATTTTTTGTGTCCGAAAATTGA
ACACAATGACGATTGAGGATTTTTTATCGATTCACCATCATATCGAAAAT
ATTGTACGTTATTTGCTTGAATGAATATATTTTCTATTTTAAAGAATCTT
GAGCCTTTTGAACATCGAACTTGTACATTTGATCTTTAATATCAACGGCA
GATACAGTTTTAGCTTAATGAACCTTATCTAAAATGTACAACTTCCCTTC
TTCATTGAAACTCTGAGACATTATTTTAATGTTTTTGTCCCTTTCTTATT
TACAGACTGCATCACCAGTTACAACCAACCAATCAGAGAGCGACAAAAAA
GCACGTGATCATGTCAAGCGACCAATGAACGCTTTCATGGTTTGGTCACG
TGAGAAACGAAAGAAGATGTCGCAAATCAATCCCAGAATGCATAACTCAG
AAATCTCAAAAATTTTGGGTGCGGAATGGAAACGAATGACGGAGCAGGAA
AAGGGTCCTTACATCGAAGAAGCGAAACGACTTCAAACGCAACACAGTAT
CGAGTACCCTAACTATAAATACAAACCGAGGAGACGCAAACCAAAAGCCA
TGATGAAGAAAGATAAAATGGGATACCCGTATGACGCCAATGGCGTGCCC
GCTGGAATGAAATTCCCTTACCCTTACGCGAACATTGCGACGTTCCCACA
AGACGCCATGTACACACCCATCTATCAAATGCCTGGTGCACCCGCTGGCT
ACGCAATGTACGCCGCTCCCGCTCCAACCGCTGTATCTACCGCTGACCAA
TCTCGACAATCCATGGTATCGCCATCTGGACAAGCCCGCCATTCACCGCC
CACCTCCACCCCAGACTTCTATACCAGTATGGCTATCCAACCATCAAGCA
CCGTTCGTTCGTCGTCCGCCGACCTTATGATGTCGGTGACGTCTCAAAAC
GATCGCTACACGTCAATCAACACTACGCAAGGAAACGTTCAGTATACTTC
CACGCCTCCACTTCACATCCCGACCGCTGCGGAACCTGCCACCGGAAGTC
CCGCTTACACTCCAATGTACGGTGGCCAAAGACATTTATAAGCTTTCATG
GGAGGTTTTCCTGCTGTGATACTATCCGAAATCTTTACTTAGAACTTTTG
CTAACTTTACTCTCATTTCAGACCTTTTAAATTTGGCGTACCCAAACAAG
ATGTAACGTATTTTTGGTTTAAATTGTCATTTTTTGAATGTATATACATA
GAAGAAAACGTATTACACAGATCGATATATTATTTATAATATGATAATAA
CACGATAATATAATATTCGTATATTTTATAACTTCAAATTGTGAAGTTAA
TGTAAGAAGATTAGAGAAAAGGGCGCTGGAAATTTCCCCCCTTTTTATTT
TTTAATATATATTGATGAAAAGAAAAAGTTATTTTTCAAGGGACTAATTT
CGACTAAATTTTAACTATTTTATTTAATCCAGATTGAATCTGTCGAAGAA
TTTAAATATTGGTCTTATCTTTTGTTGCTGTTTCATCTTTTGAGTTGTGT
ATAATTATTTGTAGTTCAAAAAGATTATATGTATTGCATACTATGCGTAT
TATACTTATAGAGAGAAATTTATGTCAAAATTGCATGTTTTTTTATTTCG
TATCGTAACTACAACCCTGTATATAGTGTTTTTTAATTTGTTGAATTTTT
CAAAATTCAGAATTATTTTTTTTCTGAAACTAAAATAATACATTCATACT
CATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010180-exon-sc0000103-1575043694:54382..55165 | TCONS_00010180-exon-sc0000103-1575043694:54382..55165 | Clytia hemisphaerica | exon |
| TCONS_00010180-exon-sc0000103-1575043694:52382..52656 | TCONS_00010180-exon-sc0000103-1575043694:52382..52656 | Clytia hemisphaerica | exon |
| TCONS_00010180-exon-sc0000103-1575043694:49960..51410 | TCONS_00010180-exon-sc0000103-1575043694:49960..51410 | Clytia hemisphaerica | exon |
| TCONS_00010180-exon-sc0000103-1510915933:54382..55165 | TCONS_00010180-exon-sc0000103-1510915933:54382..55165 | Clytia hemisphaerica | exon |
| TCONS_00010180-exon-sc0000103-1510915933:52382..52656 | TCONS_00010180-exon-sc0000103-1510915933:52382..52656 | Clytia hemisphaerica | exon |
| TCONS_00010180-exon-sc0000103-1510915933:49960..51410 | TCONS_00010180-exon-sc0000103-1510915933:49960..51410 | Clytia hemisphaerica | exon |
| TCONS_00010180-exon-sc0000103-1491911889:54382..55165 | TCONS_00010180-exon-sc0000103-1491911889:54382..55165 | Clytia hemisphaerica | exon |
| TCONS_00010180-exon-sc0000103-1491911889:52382..52656 | TCONS_00010180-exon-sc0000103-1491911889:52382..52656 | Clytia hemisphaerica | exon |
| TCONS_00010180-exon-sc0000103-1491911889:49960..51410 | TCONS_00010180-exon-sc0000103-1491911889:49960..51410 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:49960..55165 - |
Blast
BLAST of TCONS_00010180 vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.052e-26 Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 1102 KARDHVKRPMNAFMVWSREKRKKMSQINPRMHNSEISKILGAEWKRMTEQEKGPYIEEAKRLQTQHSIE 1308
K DH+KRPMNAFMVWSR +R+KM+Q NP+MHNSEISK LGAEWK ++E EK PYI+EAKRL+ QH E
Sbjct: 3 KPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 71
The following BLAST results are available for this feature:
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