TCONS_00010192 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010192
Unique Name	TCONS_00010192
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3368

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000103:104212..109078-

transcript sequence

>TCONS_00010192 ID=TCONS_00010192|Name=TCONS_00010192|organism=Clytia hemisphaerica|type=transcript|length=3368bp
gaaaagtttaaaaaaagtagtAGGAAAAAATATAGTAATTATGGATGACC
GTTTTGATAATTTAAACAATCATTATGATTATGAAGAACACGACAATGAA
AGTGACGATGATGGCCCTGCTGTCAGACGAGGAACAAAATGCAgatattg
attattttttaaccATTGAAGCTGGTAAAGATATCATCAAAGAAAAAGga
aattttccATCATCTTCAGCAAGTGGTTCACAACTGGACGAGAAGATAGT
GCTGGGTCAAACAGTAAAAAAAGATGATCTTTTTTATGATGCAGATATAG
ataaacaaaatcaagaatggATGGAtagaaagagaaagaaaaattcttcA
TCAGGTGGTGAGACCTCCTCTGCTCATAAAGCTCCAAAAAGTGACGCCAT
TTTAAGTTGTCCTGGATGCATGGTAACCGTTTGTATTGATTGCCAGAGGC
ATGACATCTACAAGACACAATTTCGAGCCATGTTTGTTATGAACTGTTAT
GTAGTAGCTGATGAAGTACTCAAAtacgaaacaaaaaataaatctaaaaa
GAGAAGGAAAAAAGAAGGACCAGGGAAGTTGGTCCCGGTTGAAAAAGaca
gtgaagaaattttaaataagGACCTTGAGATTTATAATCCCGTGAAATGT
GATTGTTGTCAGACTGAACTTGCTGTttacgataaaaatgaaatctaTCA
TTTCCACAATGTTCTTGAAAGCTTGTCTTGACACTTTAGAAGATCTTATC
GAATTTGAAACTTATCGACCTCATGGAGAATTTTGATGGAtagatttttg
tcaattttttatagttcataaattattttgttttcactttaAGATGTAAA
TATTTATTTAGAGATAAACATAAAAGATGAATTAAATAACCAAGGTTttg
ttgaaaactttttttttctccttatatacactgaattttcttttctttat
agtaaataaatcactaaaaaaggaTCCAGCTACTTATTTTTGAGGAATGC
ACCAGCAAAATCTTCCTGACACTAAAACAAATGCAGTGCAAAACCCTGTA
TCCATTCTCCCTGCAAATGGGTATAACAAACGTACTGAATACAAAATTGC
AACCAAACTGAAAGTGGCAGAAAAGTTACAAATCTCAACTGAAACATTAC
CTCAATCAATGAAAGACAATCTTGATCTAGTACGTAATGTTGAAGTCCAA
TCAACTGAAAACATTTCGTTCATCCATAAAGCACCCAAAAGAAGACCACC
AAAGCCGCAAAAAGAAATAGTAGTAGTGTCTGAACTCACTAGCAAGGATA
GACATCGTTACAAGGAAGCTGATCGCAGAATCAAAGAGAAGTTTGATTTT
GACAGTTTAATGACTGTTCTTGAGCTTGACAACAAAATGAACAAGAGTGA
TGTATTGAATGTAGCCAGAAACGTGATCAACACTGAAACATCACATCGGA
ATTTCTTAGTGACTGAACTGAGGAAACTAATAGACTTTAATATTCTTCCT
AAATTACAAAGACTTGTTAGCGAGTCAGGGGATCGCACATCATGCCATTG
TCATGATAATTCAAATGGTTATTTAAAAGATGTTTTGAAGCATTTTGATG
AGAAGTACAATAAACAAATTGATTCAGCGTTAGTAAATGCATTACTAATA
CTGTTACGAGATTTGTGTTATCAGTGCTTACGCTTAAAATCAATGAGTCT
ACACCATTATATAATCAAAACCCAAGTTTTAAAAAACACGTCTGCACCAG
AAAGTGTTCCAGCCGTTATGCTCTCACCAGATGACAATCCAACCATAGTT
TTTTTACCAGATAAAGCAACAAGCTCTCATGCTCCCACCAAAGGTGCTGT
ATCAGAAAGCTCTACAAGCACGAGGGTTCCCTCAGAAGTTGCTGTACCTA
ATAACTCTCCTTCAAGAACgggaatgtttttcaaaaatgcccTTTCCATA
ACACCAACAACTCCTCAAATAGCGGCAATAGCAGCACCACTCTATCCACA
GCATTCACATCATTCACATACAAATACGATCTTACATTCTGTACAGCCAC
CACCTCGGCCGCAAACACATATAATTCTACAGCCTATACAACCGCAAGCA
AATATGGTACAACCTGTTACTTTTCAACCAAATAAAAGGAAACGAATTGA
TAATAAATTTTTATACGTTCCAAACCAGCAGCTCCCTTATCAAAGAAATC
CTTATTTGACGCCAAGTACGTTACAAGTTTTGGAAGCTCAAGCACCTTCC
AAGTCAGAATCCATTGAAAGATATGcagatgaaattgaaaatggaaTCAA
TATTGACGATGGACTTGCAGCTTTGGTTTGATCTGTTTTTATATATACAT
CAGCAATTGAATTCCTTCTTACACCAATATTGCAAACAATGCGCAATCAA
TTTAAGATTTTGAGTAGGGTTCAAAACCACTTCCaaccttttctttcttt
tgatttttgaaattggCTTGCTTATACCTAATCAGATTTTTAATTCTAGA
CCTAGAAATCATTCTAGCTTGGTTTAGACACAACTCCCTTGTTGCAAATC
CAGAGAAGTTTCAGGTGTTGTTTCCAGGCAACTTTTCTATTGTTCATGCA
AACTCTGTTCCATATTCtagtatttttaaattttaaaatattatttacta
TATAGTAAATATTCGAATGTCATGTTGGATTTAATTAGTACTTGTAACTA
TTTTTTATtaccaacgttaaataaagaacaaataaaataaataaaataga
cAAGACGCCATAACTATAGGTACAACATTCaagtaaattttaaaaaaaaa
tacctaggcgagacaaatttaatttattgttctacaaGAAAACCTTTAGA
AGAAATATGGATCAGTCGGTCGGTGTAATAGAAATCTATTTCATAAAAGC
TAGGGTCGGAAGGTCAACATCTGAAAAAAATTGGGACATTTTCAAAGTCC
CAAATTTTGCATAAGTGAGCTTTTTGTTTTCTCAAGGTTTGATACTTCAT
AATCAACTCTGGGGTCAATTATGGAGCATGGCTGTAAGACCGTTTCaatt
attaaaatttaatttctcaGAATTATAATAATGACATTATGATATGATTT
GTCCTGGTCGCCCAGTACAATGCACTGGGACCAGTATTGCGTGCTTAGTC
TGTTGCACAGTATTTTTGTGATGGGTGGGTTTTTTCAGTTTTATTCTATT
TGGAGTTTATCAAATATTGATTCTCATgcatattttttataaattatttt
tatttgaattttatttatgTTAGGCAAATGAATAATTAGgattagatttt
gaaaatttaaaattatgatcataaaatataaaattaagtATGGATTAAGA
ATACATATAGTATAGAGT

Run BLAST on NCBI

transcript from alignment at sc0000103:104212..109078-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010192 ID=TCONS_00010192|Name=TCONS_00010192|organism=Clytia hemisphaerica|type=transcript|length=4867bp|location=Sequence derived from alignment at sc0000103:104212..109078- (Clytia hemisphaerica)
GAAAAGTTTAAAAAAAGTAGTAGGAAAAAATATAGTAATTATGGATGACC
GTTTTGATAATTTAAACAATCATTATGATTATGAAGAACACGACAATGAA
AGTGACGATGATGGCCCTGCTGTCAGGTAATTTCATTATTTGAATTGGGA
GTTTTGTGGTTGATAAACATCAATACATCTGATTCTGTGTAAGTGAAAGG
ATATATAGATAACTTTTACTTTTGAATACCATCCAAGAGCTCTAAGAACT
GACCTTTAACAAAGATTTTTCTCTGGGAATTTTATAAGTAAGAACTTCTT
GATTTTCTTATTTTCTGCTTTTAGCTCAGACGAGGAACAAAATGCAGATA
TTGATTATTTTTTAACCATTGAAGCTGGTAAAGATATCATCAAAGAAAAA
GGTGCTTATCTCATAATTCTTTTTTTGATTATCTTATTAGTAAATTTCTG
AGGTGGGTTCATTGTTTTTTTCGCTCTCAAAATAGATCACCCCAATAGGT
TCGATAAAAATCAAGATTGCTAATCATATTCTTGTAATATTCTTTCTTAC
AATAAATTATCAAGTTTTTTGAATTTTGAAGTTTGTGCTTAATTTTTCAG
GAAATTTTCCATCATCTTCAGCAAGTGGTTCACAACTGGACGAGAAGATA
GTGCTGGGTCAAACAGTAAAAAAAGATGATCTTTTTTATGATGCAGATAT
AGATAAACAAAATCAAGAATGGATGGATAGAAAGAGAAAGAAAAATTCTT
CATCAGGTCTGTTTTTATTAGACATTCAAACTGATTCATATAAAGGTTTT
GGCTTGTTCATTTTATGCTTATAATTATACAAGTGGAAATTCTCAAATTT
TTCCATTATAGAATCGATTGAATAGTTTGTTTTGCAATGATGCGTTGACC
ATTATTGTTTGCAGTTAATTTTGTTAAATTTTGTTAGTTTTTTTAGATTA
ATCTTTTTTACAAACATTATTTTGAGATTTATTTGATTGATTTCCTGACA
GGTGGTGAGACCTCCTCTGCTCATAAAGCTCCAAAAAGTGACGCCATTTT
AAGTTGTCCTGGATGCATGGTAACCGTTTGTATTGATTGCCAGAGGTATG
TTCATTAATCTTATTTAGTTTGTTTAGATTGTATCAAAATTTTTCTATTT
TAATTAGTTTTTCAATTTAGGCTTTCTACTTCAGGCAAGACCAACAAGTA
AAAGCTAAAGAATCAATCTCTATTTTCAAAAATTCAGAAAATGTCCGACC
TATTGGGAAATAGACTACAACAGTTACCACTTACTATATACAATTGTTTG
TTTTAGGCATGACATCTACAAGACACAATTTCGAGCCATGTTTGTTATGA
ACTGTTATGTAGTAGCTGATGAAGTACTCAAATACGAAACAAAAAATAAA
TCTAAAAAGAGAAGGAAAAAAGAAGGACCAGGGAAGTTGGTCCCGGTTGA
AAAAGACAGTGAAGAAATTTTAAATAAGGACCTTGAGATTTATAATCCCG
TGAAATGTGATTGTTGTCAGACTGAACTTGCTGTTTACGATAAAAATGAA
ATCTATCATTTCCACAATGTTCTTGAAAGCTTGTCTTGACACTTTAGAAG
ATCTTATCGAATTTGAAACTTATCGACCTCATGGAGAATTTTGATGGATA
GATTTTTGTCAATTTTTTATAGTTCATAAATTATTTTGTTTTCACTTTAA
GATGTAAATATTTATTTAGAGATAAACATAAAAGATGAATTAAATAACCA
AGGTTTTGTTGAAAACTTTTTTTTTCTCCTTATATACACTGAATTTTCTT
TTCTTTATAGTAAATAAATCACTAAAAAAGGATCCAGCTACTTATTTTTG
AGGAATGCACCAGCAAAATCTTCCTGACACTAAAACAAATGCAGGTATAG
ATATTGTTCAATATTTTTTCAAGGCCAATGCTCAATTGACACCCTTTTTT
TATGTGAACCAAATGTTTGACATCCCTTTTTATGTGAACCAAAGCATTAG
AATCAAAAATTTATATGTCAAATTTTAAGTTTGCCTTTTAGACTAGTCAT
AGCTTCACTAAAATACCACTGTCCTAATAGCCTTTTATGAATTGATATAC
TGATAATGTACGCAATCCCTTGTTTACTCTGTAAGAATCCTGCTTACTGT
CCATTATCTTCCGTGATGCTATGGGTGCTTCCTCACTTGCTACGCTCGTT
GCGTTGGCAATTATAATGAAAAAAGACTTTTCACTTGATTGAAGACACAG
TTTGTAATTAAAGCTCATGCCTTTTCTGTTGCTAACCTGCTTTCACCTCA
ATTTCATTATTCTAATTCCATTTGATTATTTTTCTCTAGTGCAAAACCCT
GTATCCATTCTCCCTGCAAATGGGTATAACAAACGTACTGAATACAAAAT
TGCAACCAAACTGAAAGTGGCAGAAAAGTTACAAATCTCAACTGAAACAT
TACCTCAATCAATGAAAGACAATCTTGATCTAGTACGTAATGTTGAAGTC
CAATCAACTGAAAACATTTCGTTCATCCATAAAGCACCCAAAAGAAGACC
ACCAAAGCCGCAAAAAGAAATAGTAGTAGTGTCTGAACTCACTAGCAAGG
ATAGACATCGTTACAAGGAAGCTGATCGCAGAATCAAAGAGAAGTTTGAT
TTTGACAGTTTAATGACTGTTCTTGAGCTTGACAACAAAATGAACAAGGT
GAATGCACAAATTCTTTTTCTTGATGAAAGGCCTGATATAACACAATAAG
TAATACTCTAGTTTTGTTTCTACATTTCATCCAGAATGTTGTATTAATTA
TTATTCTACTTTTCCTTATTTGATTTCTCCCAACTGCTGAAAAATATCAT
GGTAGAAATTACGACTGCATCACTATCTCCTTTCTCATTTTTAGAGTGAT
GTATTGAATGTAGCCAGAAACGTGATCAACACTGAAACATCACATCGGAA
TTTCTTAGTGACTGAACTGAGGAAACTAATAGACTTTAATATTCTTCCTA
AATTACAAAGACTTGTTAGCGAGTCAGGGGATCGCACATCATGCCATTGT
CATGATAATTCAAATGGTTATTTAAAAGATGTTTTGAAGCATTTTGATGA
GAAGTACAATAAACAAATTGATTCAGCGTTAGTAAATGCATTACTAATAC
TGTTACGAGATTTGTGTTATCAGTGCTTACGCTTAAAATCAATGAGTCTA
CACCATTATATAATCAAAACCCAAGTTTTAAAAAACACGTCTGCACCAGA
AAGTGTTCCAGCCGTTATGCTCTCACCAGATGACAATCCAACCATAGTTT
TTTTACCAGATAAAGCAACAAGCTCTCATGCTCCCACCAAAGGTGCTGTA
TCAGAAAGCTCTACAAGCACGAGGGTTCCCTCAGAAGTTGCTGTACCTAA
TAACTCTCCTTCAAGAACGGGAATGTTTTTCAAAAATGCCCTTTCCATAA
CACCAACAACTCCTCAAATAGCGGCAATAGCAGCACCACTCTATCCACAG
CATTCACATCATTCACATACAAATACGATCTTACATTCTGTACAGCCACC
ACCTCGGCCGCAAACACATATAATTCTACAGCCTATACAACCGCAAGCAA
ATATGGTACAACCTGTTACTTTTCAACCAAATAAAAGGAAACGAATTGAT
AATAAATTTTTATACGTTCCAAACCAGCAGCTCCCTTATCAAAGAAATCC
TTATTTGACGCCAAGTACGTTACAAGTTTTGGAAGCTCAAGCACCTTCCA
AGTCAGAATCCATTGAAAGATATGCAGATGAAATTGAAAATGGAATCAAT
ATTGACGATGGACTTGCAGCTTTGGTTTGATCTGTTTTTATATATACATC
AGCAATTGAATTCCTTCTTACACCAATATTGCAAACAATGCGCAATCAAT
TTAAGATTTTGAGTAGGGTTCAAAACCACTTCCAACCTTTTCTTTCTTTT
GATTTTTGAAATTGGCTTGCTTATACCTAATCAGATTTTTAATTCTAGAC
CTAGAAATCATTCTAGCTTGGTTTAGACACAACTCCCTTGTTGCAAATCC
AGAGAAGTTTCAGGTGTTGTTTCCAGGCAACTTTTCTATTGTTCATGCAA
ACTCTGTTCCATATTCTAGTATTTTTAAATTTTAAAATATTATTTACTAT
ATAGTAAATATTCGAATGTCATGTTGGATTTAATTAGTACTTGTAACTAT
TTTTTATTACCAACGTTAAATAAAGAACAAATAAAATAAATAAAATAGAC
AAGACGCCATAACTATAGGTACAACATTCAAGTAAATTTTAAAAAAAAAT
ACCTAGGCGAGACAAATTTAATTTATTGTTCTACAAGAAAACCTTTAGAA
GAAATATGGATCAGTCGGTCGGTGTAATAGAAATCTATTTCATAAAAGCT
AGGGTCGGAAGGTCAACATCTGAAAAAAATTGGGACATTTTCAAAGTCCC
AAATTTTGCATAAGTGAGCTTTTTGTTTTCTCAAGGTTTGATACTTCATA
ATCAACTCTGGGGTCAATTATGGAGCATGGCTGTAAGACCGTTTCAATTA
TTAAAATTTAATTTCTCAGAATTATAATAATGACATTATGATATGATTTG
TCCTGGTCGCCCAGTACAATGCACTGGGACCAGTATTGCGTGCTTAGTCT
GTTGCACAGTATTTTTGTGATGGGTGGGTTTTTTCAGTTTTATTCTATTT
GGAGTTTATCAAATATTGATTCTCATGCATATTTTTTATAAATTATTTTT
ATTTGAATTTTATTTATGTTAGGCAAATGAATAATTAGGATTAGATTTTG
AAAATTTAAAATTATGATCATAAAATATAAAATTAAGTATGGATTAAGAA
TACATATAGTATAGAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005717	XLOC_005717	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000103	supercontig	sc0000103:104212..109078 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.91931	9.11161	2.19449	0.638958	8.86542	6.17661	5.58265	5.29377	2.09287	3.20204	2.69929	0.860581	1.63988	2.23743	2.30344	2.53357	1.74931	2.2131	1.0876	1.21564	1.63469	2.41087	11.444	10.2214	1.3356	2.21178	1.76248	1.11813	7.07595	6.69617

Blast

[Close]

BLAST of TCONS_00010192 vs. Swiss-Prot (Human)
Match: EAPP (E2F-associated phosphoprotein OS=Homo sapiens GN=EAPP PE=1 SV=4)

HSP 1 Score: 132.494 bits (332), Expect = 2.503e-33
Identity = 71/154 (46.10%), Postives = 100/154 (64.94%), Query Frame = 3

Query:  273 DDLFYDADIDKQNQEWMDRKRKKNSSSGGETSSAHKA-PKSDAILSCPGCMVTVCIDCQRHDIYKTQFRAMFVMNCYVVADEVLXXXXXXXXXXXXXXXXXXXLVPVEKDSEEILNKDL-EIYNPVKCDCCQTELAVYDKNEIYHFHNVLESLS 728
            D+L YD + D ++Q W+D +R+     G + S   +  P SDA+L+CP CM T+C+DCQRH+ YKTQ+RAMFVMNC +  +EVL       S+ R+K+    K+    +D+ E    D+ EIY+PV C  C TE+AVYDK+E++HF NVL S S
Sbjct:  135 DELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVL---RYKASENRKKRRVHKKMRSNREDAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS 285

The following BLAST results are available for this feature:

BLAST of TCONS_00010192 vs. Swiss-Prot (Human)

BLAST of TCONS_00010192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EAPP	2.503e-33	46.10	E2F-associated phosphoprotein OS=Homo sapiens GN=E...	[more]

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TCONS_00010192 (transcript) - C. hemisphaerica